Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006464

Physical Location & Seq

Genomic Coordinates Forward (+)

11592944 .. 11597235

Gene Structure 4292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G192600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAATCATCCTCAGCCCCCTCAACCCCAAGACCCATCGGACCCCCAACTCCCCCACATCAGAATCCACCACCCTAACTCCCCACGCCACCACCCCAACTCTCCACGTCACCACACCTCATCCGCAGGCTCCGCCGCCACTCCCACCCCCACAGCCGGCGCCCGCCGAAAGCTCGGCGTAGCTGTCGACCTCTCCGACGAGAGCGCCCATGCCGTCCGCTGGGCCGTCGACCACTACATCCGCCCCGGAGACGCCGTCGTTCTCCTCCACGTCAGCCCCACCTCCGTCCTATTCGGCGCCGACTGGGGCTCCGTCGACCTCTCCATCAATACCAACGACGACGTTGACTTCGTCGACAACCACGCCTTAAACGACTCCGTCAAGCAGAAGAAGCTCGAGAATGACTTTGATGCCTTCACTGCTTCCAAGGCCGCCGATCTCGCCAGGCCCTTGAAGGAGGCTCAGATTCCCTTCAAGATCCACATCGTTAAGGACCATGACATGAAGGAGAGGCTGTGCTTGGAGGTTGAGAGGCTAGGGCTCAGTGCCGTGATCATGGGGAGCCGAGGGGTTGGTGCCGCGAAGCGTGGGAATGACGGTAGGCTTGGGAGTGTGAGCGATTATTGCGTTCATCACTGTGTTTGCCCTGTTGTTGTTGTACGGTTTCCAGATGATGACAATGGTGCCGGTGCCGGTGCCGGTGGTTCTGCTGTTGCCCCTGCTGCTGTTGTTGCGGTTAAAGAGGATGAGGAGGAAGAAGCCGTGATCAAGCCAGTGGTAAAGGACGAGCATCAAAAAGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002238 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0010033 GO:0016020 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

269

Amino Acids

28.73

Weight (kDa)

5.9

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27320 AT4G27320 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430
fragaria_vesca	FvH4_3g21220 FvH4_3g21220
malus_domestica	MD03G1216700.v1.1 MD11G1234300.v1.1
prunus_persica	Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1
pyrus_communis	pycom11g20630
rosa_chinensis	RchiOBHm_Chr5g0036291
rosa_laevigata	RLG00000033684 RLG00000035812
rosa_multiflora	Rmu_sc0000247.1_g000073
rosa_roxburghii	Rroxscaffold_1G00044500
rosa_rugosa	Rorug05G0154600 Rorug05G0154700 Rorug05G0154800
rosa_samantha	Rh5BG248900
rosa_wichuraiana	Rw5G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	6 cut(s)	158, 296, 575, 683, 689, 695
AccI	GTMKAC	4 cut(s)	186, 228, 315, 354
AccII	CGCG	1 cut(s)	581
AciI	CCGC	9 cut(s)	123, 132, 135, 163, 217, 241, 432, 579, 734
AclWI	GGATC	1 cut(s)	472
AcyI	GRCGYC	3 cut(s)	159, 252, 297
AfaI	GTAC	1 cut(s)	660
AfiI	CCNNNNNNNGG	2 cut(s)	155, 219
AgsI	TTSAA	2 cut(s)	454, 475
AjiI	CACGTC	2 cut(s)	107, 271
AjnI	CCWGG	1 cut(s)	443
AluBI	AGCT	3 cut(s)	172, 182, 394
AluI	AGCT	3 cut(s)	172, 182, 394
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	3 cut(s)	222, 429, 446
ApeKI	GCWGC	1 cut(s)	722
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AspLEI	GCGC	3 cut(s)	161, 206, 299
AspS9I	GGNCC	4 cut(s)	40, 222, 447, 493
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	40, 493
BanI	GGYRCC	6 cut(s)	158, 296, 575, 683, 689, 695
BanII	GRGCYC	2 cut(s)	311, 543
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	2 cut(s)	43, 332
BceAI	ACGGC	5 cut(s)	197, 209, 239, 533, 746
BciT130I	CCWGG	1 cut(s)	445
BclI	TGATCA	2 cut(s)	552, 765
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	536
BfoI	RGCGCY	3 cut(s)	162, 207, 300
BisI	GCNGC	4 cut(s)	135, 432, 579, 723
BlsI	GCNGC	4 cut(s)	136, 433, 580, 724
Bme1390I	CCNGG	2 cut(s)	246, 445
Bme18I	GGWCC	2 cut(s)	40, 493
BmeT110I	CYCGRG	1 cut(s)	395
BmgBI	CACGTC	2 cut(s)	107, 271
BmgT120I	GGNCC	4 cut(s)	40, 222, 447, 493
BmrFI	CCNGG	2 cut(s)	246, 445
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	3 cut(s)	400, 790, 799
BmuI	ACTGGG	1 cut(s)	313
Bpu10I	CCTNAGC	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	482
BsaHI	GRCGYC	3 cut(s)	159, 252, 297
BsaJI	CCNNGG	3 cut(s)	244, 426, 565
BsaXI	ACNNNNNCTCC	8 cut(s)	62, 92, 240, 270, 293, 323, 500, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 219
Bse118I	RCCGGY	4 cut(s)	155, 686, 692, 698
Bse1I	ACTGG	2 cut(s)	308, 773
Bse8I	GATNNNNATC	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	3 cut(s)	244, 426, 565
BseGI	GGATG	4 cut(s)	7, 119, 237, 751
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	2 cut(s)	155, 219
BseMII	CTCAG	3 cut(s)	26, 476, 556
BseNI	ACTGG	2 cut(s)	308, 773
BseRI	GAGGAG	2 cut(s)	254, 764
BseXI	GCAGC	1 cut(s)	709
BseYI	CCCAGC	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	581
BshFI	GGCC	3 cut(s)	224, 431, 448
BshNI	GGYRCC	6 cut(s)	158, 296, 575, 683, 689, 695
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	5 cut(s)	156, 246, 687, 693, 699
BslI	CCNNNNNNNGG	2 cut(s)	155, 219
BsmAI	GTCTC	1 cut(s)	243
BsmBI	CGTCTC	1 cut(s)	243
BsnI	GGCC	3 cut(s)	224, 431, 448
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	311, 543
Bsp143I	GATC	4 cut(s)	436, 477, 552, 765
BspACI	CCGC	9 cut(s)	123, 132, 135, 163, 217, 241, 432, 579, 734
BspANI	GGCC	3 cut(s)	224, 431, 448
BspCNI	CTCAG	3 cut(s)	25, 475, 555
BspFNI	CGCG	1 cut(s)	581
BspPI	GGATC	1 cut(s)	472
BspT107I	GGYRCC	6 cut(s)	158, 296, 575, 683, 689, 695
BsrFI	RCCGGY	4 cut(s)	155, 686, 692, 698
BsrI	ACTGG	2 cut(s)	308, 773
BssAI	RCCGGY	4 cut(s)	155, 686, 692, 698
BssECI	CCNNGG	3 cut(s)	244, 426, 565
BssMI	GATC	4 cut(s)	436, 477, 552, 765
BssNI	GRCGYC	3 cut(s)	159, 252, 297
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	445
Bst4CI	ACNGT	3 cut(s)	599, 638, 663
BstACI	GRCGYC	3 cut(s)	159, 252, 297
BstC8I	GCNNGC	3 cut(s)	127, 157, 163
BstDEI	CTNAG	4 cut(s)	12, 462, 542, 804
BstF5I	GGATG	4 cut(s)	7, 119, 237, 751
BstFNI	CGCG	1 cut(s)	581
BstH2I	RGCGCY	3 cut(s)	162, 207, 300
BstHHI	GCGC	3 cut(s)	161, 206, 299
BstKTI	GATC	4 cut(s)	439, 480, 555, 768
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	4 cut(s)	436, 477, 552, 765
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 391, 419, 428, 440, 624, 722, 731
BstNI	CCWGG	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	244, 443
BstUI	CGCG	1 cut(s)	581
BstV1I	GCAGC	1 cut(s)	709
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	224, 431, 448
BtrI	CACGTC	2 cut(s)	107, 271
BtsCI	GGATG	4 cut(s)	7, 119, 237, 751
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	4 cut(s)	417, 550, 634, 780
Cac8I	GCNNGC	3 cut(s)	127, 157, 163
CfoI	GCGC	3 cut(s)	161, 206, 299
Cfr10I	RCCGGY	4 cut(s)	155, 686, 692, 698
Cfr13I	GGNCC	4 cut(s)	40, 222, 447, 493
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	659
CviAII	CATG	4 cut(s)	209, 497, 502, 556
CviQI	GTAC	1 cut(s)	659
DdeI	CTNAG	4 cut(s)	12, 462, 542, 804
DinI	GGCGCC	2 cut(s)	160, 298
DpnI	GATC	4 cut(s)	438, 479, 554, 767
DpnII	GATC	4 cut(s)	436, 477, 552, 765
EciI	GGCGGA	2 cut(s)	121, 230
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	2 cut(s)	311, 543
Eco47I	GGWCC	2 cut(s)	40, 493
Eco88I	CYCGRG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	2 cut(s)	311, 543
EgeI	GGCGCC	2 cut(s)	160, 298
EheI	GGCGCC	2 cut(s)	160, 298
ErhI	CCWWGG	1 cut(s)	426
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	4 cut(s)	212, 500, 505, 559
FaiI	YATR	4 cut(s)	210, 498, 503, 557
FatI	CATG	4 cut(s)	208, 496, 501, 555
FauI	CCCGC	1 cut(s)	170
FbaI	TGATCA	2 cut(s)	552, 765
FblI	GTMKAC	4 cut(s)	186, 228, 315, 354
Fnu4HI	GCNGC	4 cut(s)	135, 432, 579, 723
FokI	GGATG	3 cut(s)	106, 224, 758
FriOI	GRGCYC	2 cut(s)	311, 543
Fsp4HI	GCNGC	4 cut(s)	135, 432, 579, 723
FspBI	CTAG	1 cut(s)	536
GlaI	GCGC	3 cut(s)	160, 205, 298
GluI	GCNGC	4 cut(s)	135, 432, 579, 723
GsaI	CCCAGC	1 cut(s)	223
HaeII	RGCGCY	3 cut(s)	162, 207, 300
HaeIII	GGCC	3 cut(s)	224, 431, 448
HapII	CCGG	5 cut(s)	156, 246, 687, 693, 699
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	3 cut(s)	161, 206, 299
Hin1I	GRCGYC	3 cut(s)	159, 252, 297
Hin1II	CATG	4 cut(s)	212, 500, 505, 559
Hin6I	GCGC	3 cut(s)	159, 204, 297
HinP1I	GCGC	3 cut(s)	159, 204, 297
HincII	GTYRAC	5 cut(s)	187, 229, 316, 346, 355
HindII	GTYRAC	5 cut(s)	187, 229, 316, 346, 355
HinfI	GANTC	4 cut(s)	4, 63, 374, 466
HpaII	CCGG	5 cut(s)	156, 246, 687, 693, 699
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	5 cut(s)	187, 229, 316, 346, 355
Hpy188I	TCNGA	4 cut(s)	40, 62, 196, 465
Hpy188III	TCNNGA	3 cut(s)	397, 475, 668
Hpy8I	GTNNAC	5 cut(s)	187, 229, 316, 346, 355
Hpy99I	CGWCG	7 cut(s)	200, 230, 260, 317, 341, 344, 356
HpyAV	CCTTC	4 cut(s)	424, 448, 481, 499
HpyCH4III	ACNGT	3 cut(s)	599, 638, 663
HpyCH4IV	ACGT	3 cut(s)	106, 270, 342
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 391, 419, 428, 440, 624, 722, 731
HpyF3I	CTNAG	4 cut(s)	12, 462, 542, 804
HpySE526I	ACGT	3 cut(s)	106, 270, 342
Hsp92I	GRCGYC	3 cut(s)	159, 252, 297
Hsp92II	CATG	4 cut(s)	212, 500, 505, 559
HspAI	GCGC	3 cut(s)	159, 204, 297
KasI	GGCGCC	2 cut(s)	158, 296
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Ksp22I	TGATCA	2 cut(s)	552, 765
Kzo9I	GATC	4 cut(s)	436, 477, 552, 765
LmnI	GCTCC	3 cut(s)	134, 314, 561
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	3 cut(s)	400, 790, 799
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	3 cut(s)	106, 270, 342
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	4 cut(s)	438, 479, 554, 767
MboI	GATC	4 cut(s)	436, 477, 552, 765
MboII	GAAGA	2 cut(s)	400, 767
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	2 cut(s)	311, 543
Mly113I	GGCGCC	2 cut(s)	159, 297
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	219
MroNI	GCCGGC	1 cut(s)	155
MseI	TTAA	3 cut(s)	368, 489, 738
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	5 cut(s)	156, 246, 687, 693, 699
MspR9I	CCNGG	2 cut(s)	246, 445
MvaI	CCWGG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	581
MwoI	GCNNNNNNNGC	8 cut(s)	131, 391, 419, 428, 440, 624, 722, 731
NaeI	GCCGGC	1 cut(s)	157
NarI	GGCGCC	2 cut(s)	159, 297
NciI	CCSGG	1 cut(s)	246
NdeII	GATC	4 cut(s)	436, 477, 552, 765
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	4 cut(s)	212, 500, 505, 559
NmeAIII	GCCGAG	2 cut(s)	153, 590
NmuCI	GTSAC	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	3 cut(s)	192, 348, 369
PdiI	GCCGGC	1 cut(s)	157
PfeI	GAWTC	3 cut(s)	4, 63, 466
PflFI	GACNNNGTC	3 cut(s)	254, 350, 377
PkrI	GCNGC	4 cut(s)	136, 433, 580, 724
PleI	GAGTC	1 cut(s)	368
PluTI	GGCGCC	2 cut(s)	162, 300
PpsI	GAGTC	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	443
PspPI	GGNCC	4 cut(s)	40, 222, 447, 493
PsuI	RGATCY	1 cut(s)	477
PsyI	GACNNNGTC	3 cut(s)	254, 350, 377
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
RseI	CAYNNNNRTG	1 cut(s)	636
SalI	GTCGAC	4 cut(s)	185, 227, 314, 353
SaqAI	TTAA	3 cut(s)	368, 489, 738
SatI	GCNGC	4 cut(s)	135, 432, 579, 723
Sau3AI	GATC	4 cut(s)	436, 477, 552, 765
Sau96I	GGNCC	4 cut(s)	40, 222, 447, 493
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	246, 445
SduI	GDGCHC	2 cut(s)	311, 543
SfaNI	GCATC	3 cut(s)	400, 790, 799
SfoI	GGCGCC	2 cut(s)	160, 298
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	2 cut(s)	40, 493
SlaI	CTCGAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SsiI	CCGC	9 cut(s)	123, 132, 135, 163, 217, 241, 432, 579, 734
SspDI	GGCGCC	2 cut(s)	158, 296
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	2 cut(s)	244, 443
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	599, 638, 663
TaiI	ACGT	3 cut(s)	109, 273, 345
TaqI	TCGA	5 cut(s)	186, 228, 315, 354, 396
TauI	GCSGC	3 cut(s)	137, 434, 581
TfiI	GAWTC	3 cut(s)	4, 63, 466
Tru1I	TTAA	3 cut(s)	368, 489, 738
Tru9I	TTAA	3 cut(s)	368, 489, 738
TscAI	CASTG	4 cut(s)	424, 550, 641, 780
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	17, 518, 620
TspGWI	ACGGA	3 cut(s)	274, 301, 367
TspRI	CASTG	4 cut(s)	424, 550, 641, 780
Tth111I	GACNNNGTC	3 cut(s)	254, 350, 377
VpaK11BI	GGWCC	2 cut(s)	40, 493
XhoI	CTCGAG	1 cut(s)	395
XmiI	GTMKAC	4 cut(s)	186, 228, 315, 354
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.