MD11G1234300.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0006464
Physical Location & Seq
Reverse (-)
34098095 .. 34102435
4341 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1234300.v1.1.491

Sequence Viewer

Length: 801 bp
ATGAATCACACGCAGCAGCCTTCCCAGCCCCAAGATCTGTCAGATCCCCAACTCCCCAATATCAGAATCCACCACCCCAACTCTCCCCGACACCACCCCAACTCCCCTCGTCACCACTCCTCCTCCGCCGGCTCCGCCGCCACTCCCACCCCCACTGCCGGCGCCCGCCGCAAGCTCGGCGTCGCCGTCGACCTCTCTGACGAGAGCGCCCACGCCGTCCGCTGGGCTGTCGACCACTACATCCGCCCCGGCGACGCCGTCATCCTCCTCCACGTCAGCCCCACCTCCGTCCTCTTCGGCGCCGACTGGGGCTCCGTTGACCTCTCCATCAACACCAACGACGACGTTGATTTCGTCGACAACCACGCCCTGCACGACTCCGTCAAGCAGAAGAAGCTTGAGAACGACTTCGATGCCTTCACCGCCTCCAAGGCCGCCGATCTCGCCAAGCCCTTGAGGGAGGCGCAGATTCCGTACAAGATCCACATCGTCAAGGACCATGACATGAAGGAGCGGCTCTGCTTGGAGGTCGAGAGGCTAGGGCTCAGTGCCGTGATCATGGGGAGCCGAGGGGTCGGCGCTGCCAAGCGTGGGAACGACGGCAGGCTGGGAAGCGTCAGCGATTATTGTGTACACCACTGTGTTTGCCCCGTTGTTGTTGTCCGGTTTCCGGAGGATGACAATTGCGGCGTTGCTGATGGTGGTTCTGGTGCTCCTCCGGTTGTTTCTGTTAAAGAGAATGAGGAGGAAGAGGCCGTGATCAAGCCGGTGCTAAAGGAGGAGCATAAGAAAGATGTTTGA

Protein Analysis

267

Amino Acids

28.87

Weight (kDa)

5.99

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 57 - 222 1.3e-22 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 161, 299
AccBSI CCGCTC 1 cut(s) 514
AccI GTMKAC 3 cut(s) 189, 231, 357
AccIII TCCGGA 1 cut(s) 670
AclWI GGATC 2 cut(s) 38, 475
AcyI GRCGYC 4 cut(s) 162, 180, 255, 300
AfaI GTAC 2 cut(s) 476, 633
AfiI CCNNNNNNNGG 4 cut(s) 158, 222, 591, 670
AjiI CACGTC 1 cut(s) 274
AleI CACNNNNGTG 1 cut(s) 639
AluBI AGCT 2 cut(s) 175, 397
AluI AGCT 2 cut(s) 175, 397
Alw21I GWGCWC 1 cut(s) 715
AlwI GGATC 2 cut(s) 38, 475
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 2 cut(s) 432, 753
ApeKI GCWGC 3 cut(s) 13, 16, 581
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
Asp700I GAANNNNTTC 1 cut(s) 407
AspLEI GCGC 5 cut(s) 164, 209, 302, 466, 581
AspS9I GGNCC 1 cut(s) 496
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 2 cut(s) 104, 412
AvaII GGWCC 1 cut(s) 496
BanI GGYRCC 2 cut(s) 161, 299
BanII GRGCYC 2 cut(s) 314, 546
Bbv12I GWGCWC 1 cut(s) 715
BbvI GCAGC 3 cut(s) 25, 28, 568
BccI CCATC 2 cut(s) 335, 692
BceAI ACGGC 6 cut(s) 170, 200, 242, 536, 616, 740
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BclI TGATCA 2 cut(s) 555, 759
BcnI CCSGG 1 cut(s) 249
BfaI CTAG 1 cut(s) 539
BfoI RGCGCY 4 cut(s) 165, 210, 303, 582
BglI GCCNNNNNGGC 1 cut(s) 431
BglII AGATCT 1 cut(s) 34
BisI GCNGC 8 cut(s) 14, 17, 138, 169, 435, 515, 582, 688
BlsI GCNGC 8 cut(s) 15, 18, 139, 170, 436, 516, 583, 689
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 496
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 496
BmiI GGNNCC 5 cut(s) 133, 163, 301, 313, 566
BmrFI CCNGG 1 cut(s) 249
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 316
BpuEI CTTGAG 2 cut(s) 419, 475
BpuMI CCSGG 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 485
BsaHI GRCGYC 4 cut(s) 162, 180, 255, 300
BsaJI CCNNGG 3 cut(s) 247, 429, 568
BsaWI WCCGGW 3 cut(s) 663, 670, 718
BsaXI ACNNNNNCTCC 8 cut(s) 86, 104, 107, 116, 134, 137, 296, 326
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 222, 591, 670
Bse118I RCCGGY 3 cut(s) 128, 158, 766
Bse1I ACTGG 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 485
BseAI TCCGGA 1 cut(s) 670
BseDI CCNNGG 3 cut(s) 247, 429, 568
BseGI GGATG 3 cut(s) 240, 261, 682
BseJI GATNNNNATC 1 cut(s) 485
BseLI CCNNNNNNNGG 4 cut(s) 158, 222, 591, 670
BseMII CTCAG 1 cut(s) 559
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 6 cut(s) 109, 112, 257, 705, 758, 794
BseXI GCAGC 3 cut(s) 25, 28, 568
BseYI CCCAGC 3 cut(s) 24, 222, 607
BsgI GTGCAG 1 cut(s) 356
BshFI GGCC 2 cut(s) 434, 755
BshNI GGYRCC 2 cut(s) 161, 299
BsiHKAI GWGCWC 1 cut(s) 715
BsiSI CCGG 7 cut(s) 129, 159, 249, 664, 671, 719, 767
BslI CCNNNNNNNGG 4 cut(s) 158, 222, 591, 670
BsnI GGCC 2 cut(s) 434, 755
Bsp1286I GDGCHC 3 cut(s) 314, 546, 715
Bsp13I TCCGGA 1 cut(s) 670
Bsp1407I TGTACA 1 cut(s) 631
Bsp143I GATC 6 cut(s) 34, 43, 439, 480, 555, 759
BspANI GGCC 2 cut(s) 434, 755
BspCNI CTCAG 1 cut(s) 558
BspEI TCCGGA 1 cut(s) 670
BspLI GGNNCC 5 cut(s) 133, 163, 301, 313, 566
BspPI GGATC 2 cut(s) 38, 475
BspT107I GGYRCC 2 cut(s) 161, 299
BsrBI CCGCTC 1 cut(s) 514
BsrFI RCCGGY 3 cut(s) 128, 158, 766
BsrGI TGTACA 1 cut(s) 631
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 3 cut(s) 128, 158, 766
BssECI CCNNGG 3 cut(s) 247, 429, 568
BssMI GATC 6 cut(s) 34, 43, 439, 480, 555, 759
BssNI GRCGYC 4 cut(s) 162, 180, 255, 300
BssT1I CCWWGG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 641
Bst6I CTCTTC 2 cut(s) 299, 744
BstACI GRCGYC 4 cut(s) 162, 180, 255, 300
BstAUI TGTACA 1 cut(s) 631
BstC8I GCNNGC 5 cut(s) 130, 160, 166, 173, 605
BstDEI CTNAG 1 cut(s) 545
BstF5I GGATG 3 cut(s) 240, 261, 682
BstH2I RGCGCY 4 cut(s) 165, 210, 303, 582
BstHHI GCGC 5 cut(s) 164, 209, 302, 466, 581
BstKTI GATC 6 cut(s) 37, 46, 442, 483, 558, 762
BstMBI GATC 6 cut(s) 34, 43, 439, 480, 555, 759
BstMWI GCNNNNNNNGC 8 cut(s) 25, 134, 168, 177, 394, 422, 431, 443
BstSCI CCNGG 1 cut(s) 247
BstV1I GCAGC 3 cut(s) 25, 28, 568
BstX2I RGATCY 3 cut(s) 34, 43, 480
BstYI RGATCY 3 cut(s) 34, 43, 480
BsuRI GGCC 2 cut(s) 434, 755
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 3 cut(s) 240, 261, 682
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 3 cut(s) 153, 553, 637
Cac8I GCNNGC 5 cut(s) 130, 160, 166, 173, 605
CfoI GCGC 5 cut(s) 164, 209, 302, 466, 581
Cfr10I RCCGGY 3 cut(s) 128, 158, 766
Cfr13I GGNCC 1 cut(s) 496
CseI GACGC 3 cut(s) 169, 263, 604
Csp6I GTAC 2 cut(s) 475, 632
CspCI CAANNNNNGTGG 2 cut(s) 626, 661
CviAII CATG 3 cut(s) 500, 505, 559
CviQI GTAC 2 cut(s) 475, 632
DdeI CTNAG 1 cut(s) 545
DinI GGCGCC 2 cut(s) 163, 301
DpnI GATC 6 cut(s) 36, 45, 441, 482, 557, 761
DpnII GATC 6 cut(s) 34, 43, 439, 480, 555, 759
Eam1104I CTCTTC 2 cut(s) 299, 744
EarI CTCTTC 2 cut(s) 299, 744
EciI GGCGGA 3 cut(s) 115, 124, 233
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 2 cut(s) 314, 546
Eco47I GGWCC 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 2 cut(s) 314, 546
EgeI GGCGCC 2 cut(s) 163, 301
EheI GGCGCC 2 cut(s) 163, 301
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 3 cut(s) 503, 508, 562
FaiI YATR 4 cut(s) 501, 506, 560, 786
FatI CATG 3 cut(s) 499, 504, 558
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 2 cut(s) 555, 759
FblI GTMKAC 3 cut(s) 189, 231, 357
Fnu4HI GCNGC 8 cut(s) 14, 17, 138, 169, 435, 515, 582, 688
FokI GGATG 3 cut(s) 227, 248, 689
FriOI GRGCYC 2 cut(s) 314, 546
Fsp4HI GCNGC 8 cut(s) 14, 17, 138, 169, 435, 515, 582, 688
FspBI CTAG 1 cut(s) 539
GlaI GCGC 5 cut(s) 163, 208, 301, 465, 580
GluI GCNGC 8 cut(s) 14, 17, 138, 169, 435, 515, 582, 688
GsaI CCCAGC 3 cut(s) 28, 226, 611
HaeII RGCGCY 4 cut(s) 165, 210, 303, 582
HaeIII GGCC 2 cut(s) 434, 755
HapII CCGG 7 cut(s) 129, 159, 249, 664, 671, 719, 767
HgaI GACGC 3 cut(s) 169, 263, 604
HhaI GCGC 5 cut(s) 164, 209, 302, 466, 581
Hin1I GRCGYC 4 cut(s) 162, 180, 255, 300
Hin1II CATG 3 cut(s) 503, 508, 562
Hin6I GCGC 5 cut(s) 162, 207, 300, 464, 579
HinP1I GCGC 5 cut(s) 162, 207, 300, 464, 579
HincII GTYRAC 4 cut(s) 190, 232, 319, 358
HindII GTYRAC 4 cut(s) 190, 232, 319, 358
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 4 cut(s) 4, 66, 377, 469
HpaII CCGG 7 cut(s) 129, 159, 249, 664, 671, 719, 767
HphI GGTGA 2 cut(s) 104, 412
Hpy166II GTNNAC 6 cut(s) 190, 232, 319, 358, 632, 634
Hpy188I TCNGA 3 cut(s) 43, 65, 199
Hpy188III TCNNGA 2 cut(s) 532, 671
Hpy8I GTNNAC 6 cut(s) 190, 232, 319, 358, 632, 634
Hpy99I CGWCG 7 cut(s) 185, 191, 257, 344, 347, 359, 602
HpyAV CCTTC 3 cut(s) 30, 427, 502
HpyCH4III ACNGT 1 cut(s) 641
HpyCH4IV ACGT 2 cut(s) 273, 345
HpyCH4V TGCA 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 134, 168, 177, 394, 422, 431, 443
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 2 cut(s) 273, 345
Hsp92I GRCGYC 4 cut(s) 162, 180, 255, 300
Hsp92II CATG 3 cut(s) 503, 508, 562
HspAI GCGC 5 cut(s) 162, 207, 300, 464, 579
KasI GGCGCC 2 cut(s) 161, 299
Kpn2I TCCGGA 1 cut(s) 670
KroI GCCGGC 2 cut(s) 128, 158
KroNI GCCGGC 2 cut(s) 130, 160
Ksp22I TGATCA 2 cut(s) 555, 759
Kzo9I GATC 6 cut(s) 34, 43, 439, 480, 555, 759
LmnI GCTCC 6 cut(s) 137, 317, 511, 564, 718, 781
Lsp1109I GCAGC 3 cut(s) 25, 28, 568
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 539
MaeII ACGT 2 cut(s) 273, 345
MaeIII GTNAC 1 cut(s) 110
MalI GATC 6 cut(s) 36, 45, 441, 482, 557, 761
MbiI CCGCTC 1 cut(s) 514
MboI GATC 6 cut(s) 34, 43, 439, 480, 555, 759
MboII GAAGA 3 cut(s) 286, 403, 761
MfeI CAATTG 1 cut(s) 682
MflI RGATCY 3 cut(s) 34, 43, 480
MhlI GDGCHC 3 cut(s) 314, 546, 715
MluCI AATT 1 cut(s) 682
Mly113I GGCGCC 2 cut(s) 162, 300
MlyI GAGTC 1 cut(s) 371
MroI TCCGGA 1 cut(s) 670
MroNI GCCGGC 2 cut(s) 128, 158
MroXI GAANNNNTTC 1 cut(s) 407
MseI TTAA 1 cut(s) 732
MslI CAYNNNNRTG 1 cut(s) 639
MspA1I CMGCKG 1 cut(s) 222
MspI CCGG 7 cut(s) 129, 159, 249, 664, 671, 719, 767
MspR9I CCNGG 1 cut(s) 249
MunI CAATTG 1 cut(s) 682
MwoI GCNNNNNNNGC 8 cut(s) 25, 134, 168, 177, 394, 422, 431, 443
NaeI GCCGGC 2 cut(s) 130, 160
NarI GGCGCC 2 cut(s) 162, 300
NciI CCSGG 1 cut(s) 249
NdeII GATC 6 cut(s) 34, 43, 439, 480, 555, 759
NgoMIV GCCGGC 2 cut(s) 128, 158
NlaIII CATG 3 cut(s) 503, 508, 562
NlaIV GGNNCC 5 cut(s) 133, 163, 301, 313, 566
NmeAIII GCCGAG 2 cut(s) 156, 593
NmuCI GTSAC 1 cut(s) 110
OliI CACNNNNGTG 1 cut(s) 639
PcsI WCGNNNNNNNCGW 3 cut(s) 183, 351, 372
PdiI GCCGGC 2 cut(s) 130, 160
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 3 cut(s) 4, 66, 469
PflFI GACNNNGTC 2 cut(s) 257, 380
PkrI GCNGC 8 cut(s) 15, 18, 139, 170, 436, 516, 583, 689
PleI GAGTC 1 cut(s) 371
PluTI GGCGCC 2 cut(s) 165, 303
PpsI GAGTC 1 cut(s) 371
PspFI CCCAGC 3 cut(s) 24, 222, 607
PspN4I GGNNCC 5 cut(s) 133, 163, 301, 313, 566
PspPI GGNCC 1 cut(s) 496
PsuI RGATCY 3 cut(s) 34, 43, 480
PsyI GACNNNGTC 2 cut(s) 257, 380
RsaI GTAC 2 cut(s) 476, 633
RsaNI GTAC 2 cut(s) 475, 632
RseI CAYNNNNRTG 1 cut(s) 639
SalI GTCGAC 3 cut(s) 188, 230, 356
SaqAI TTAA 1 cut(s) 732
SatI GCNGC 8 cut(s) 14, 17, 138, 169, 435, 515, 582, 688
Sau3AI GATC 6 cut(s) 34, 43, 439, 480, 555, 759
Sau96I GGNCC 1 cut(s) 496
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 3 cut(s) 314, 546, 715
SetI ASST 8 cut(s) 177, 195, 276, 287, 324, 348, 399, 531
SfaNI GCATC 1 cut(s) 403
SfoI GGCGCC 2 cut(s) 163, 301
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 639
SmlI CTYRAG 2 cut(s) 398, 454
SmoI CTYRAG 2 cut(s) 398, 454
Sse9I AATT 1 cut(s) 682
SspDI GGCGCC 2 cut(s) 161, 299
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 641
TaiI ACGT 2 cut(s) 276, 348
TaqI TCGA 5 cut(s) 189, 231, 357, 411, 531
TasI AATT 1 cut(s) 682
TatI WGTACW 1 cut(s) 631
TauI GCSGC 5 cut(s) 140, 171, 437, 517, 690
TfiI GAWTC 3 cut(s) 4, 66, 469
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TscAI CASTG 3 cut(s) 160, 553, 644
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 3 cut(s) 13, 16, 581
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 17, 521
TspGWI ACGGA 4 cut(s) 277, 304, 370, 462
TspRI CASTG 3 cut(s) 160, 553, 644
Tth111I GACNNNGTC 2 cut(s) 257, 380
VpaK11BI GGWCC 1 cut(s) 496
XmiI GTMKAC 3 cut(s) 189, 231, 357
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.