Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013111

Physical Location & Seq

Genomic Coordinates Reverse (-)

22219224 .. 22221968

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGCAGTTACATATATCTCCGAGCTTGAGACATGTGACTGTGGTCACAGGGAAAGGATTGAGAGAGTTCATAAAAGTTAAGGTTGGTTCTAGAAGATTCTCTTATCAAATGGTGTTTTACTCTCTACTCTTCTTCACTTTTCTTCTCCGATTCGTCTTTGTTCTCTCCACCGTTGATACTATCGACGGCGATCCCTCTCCTTGCTCCTCTCTTGCTTGCTTGGGGAAAAGACTAAAGCCAAAGCTTTTAGGAAGAAGGGTTGATTCTGGTAATGTTCCAGAAGCTATGTACCAAGTTTTAGAACAGCCTTTAAGCGAACAAGAACTCAAAGGAAGATCAGATATACCTCAAACACTTCAAGATTTCATGTCTGAAGTCAAAAGAAGCAAATCAGACGCAAGAGAATTTGCTCAAAAGCTAAAAGAAATGGTGACATTGATGGAACAGAGAACAAGAACGGCTAAGATTCAAGAGTATTTATATCGACATGTCGCATCAAGCAGCATACCGAAACAACTTCACTGTTTAGCTCTTAAACTAGCCAACGAACACTCGATAAACGCAGCGGCGCGTCTCCAGCTTCCAGAAGCTGAGCTTGTCCCTATGTTGGTAGACAACAACTACTTTCACTTTGTCTTGGCTTCAGACAATATTCTTGCAGCTTCGGTTGTGGCTAAGTCGTTGGTTCAAAATGCTTTAAGACCTCATAAGATCGTTCTTCACATCATAACGGATAGGAAAACTTATTTCCCAATGCAAGCTTGGTTCTCATTGCATCCTCTGTCTCCAGCAATAATTGAGGTCAAGGCTTTGCATCATTTCGATTGGTTATCGAAAGGTAAAGTACCCGTTTTGGAAGCTATGGAGAAAGATCAGAGAGTGAGGTCTCAATTCAGAGGTGGATCATCGGTTATTGTGGCTAATAACAAAGAGAACCCGGTTGTTGTTGCTGCTAAGTTACAAGCTCTCAGCCCTAAATACAACTCCTTGATGAATCACATCCGTATTCATCTACCAGAGTTGTTTCCAAGCTTAAACAAGGTTGTGTTTCTAGACGATGACATTGTGATCCAAACTGATCTTTCACCTCTTTGGGACATTGACATGAATGGAAAAGTAAATGGAGCAGTGGAAACATGTAGAGGAGAAGACAAGTTTGTGATGTCAAAGAAGTTCAAGAGTTACCTCAACTTCTCGAATCCGACAATTGCCAAAAACTTCAATCCAGAGGAATGTGCATGGGCTTATGGAATGAATGTTTTCGACCTAGCGGCTTGGAGGAGGACTAACATAAGCTCCACTTACTATCATTGGCTTGACGAGAACTTAAAATCAGACCTGAGTTTGTGGCAGCTGGGAACTTTGCCTCCTGGGCTGATTGCTTTCCACGGTCATGTCCAAACCATAGATCCGTTCTGGCATATGCTTGGTCTCGGATACCAAGAGACCACGAGCTATGCCGATGCTGAAAGTGCCGCTGTTGTTCATTTCAATGGAAGAGCTAAGCCTTGGCTGGATATAGCATTTCCTCATCTACGTCCTCTCTGGGCTAAGTATCTTGATTCTTCTGACAGATTTATCAAGAGCTGTCACATTAGAGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

535

Amino Acids

60.88

Weight (kDa)

9.17

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	202 - 508	5.9e-75	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54690
fragaria_vesca	FvH4_3g21730
malus_domestica	MD03G1212400.v1.1 MD11G1227600.v1.1
prunus_persica	Prupe.4G201700_v2.0.a1 Prupe.4G201700_v2.0.a1
pyrus_communis	pycom03g16110 pycom11g20030
rosa_chinensis	RchiOBHm_Chr5g0037221
rosa_laevigata	RLG00000033766
rosa_multiflora	Rmu_sc0006633.1_g000005 Rmu_sc0022939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043750
rosa_rugosa	Rorug05G0163700
rosa_samantha	Rh5AG253400 Rh5CG288000 Rh5DG263800
rosa_wichuraiana	Rw5G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	612
AccII	CGCG	1 cut(s)	571
AciI	CCGC	3 cut(s)	566, 1271, 1476
AclWI	GGATC	4 cut(s)	185, 910, 1063, 1403
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	2 cut(s)	393, 627
AfaI	GTAC	2 cut(s)	290, 846
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflIII	ACRYGT	3 cut(s)	31, 487, 1136
AgsI	TTSAA	6 cut(s)	359, 470, 689, 1177, 1222, 1492
AjnI	CCWGG	1 cut(s)	1369
AloI	GAACNNNNNNTCC	2 cut(s)	1351, 1383
Alw26I	GTCTC	6 cut(s)	22, 578, 789, 891, 1436, 1439
AlwI	GGATC	4 cut(s)	185, 910, 1063, 1403
AlwNI	CAGNNNCTG	1 cut(s)	590
ApeKI	GCWGC	5 cut(s)	501, 563, 659, 950, 1351
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	1259
AspLEI	GCGC	1 cut(s)	571
AsuC2I	CCSGG	1 cut(s)	938
AsuHPI	GGTGA	2 cut(s)	442, 1077
BauI	CACGAG	1 cut(s)	1450
BbsI	GAAGAC	1 cut(s)	1155
BbvI	GCAGC	5 cut(s)	513, 575, 671, 937, 1363
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	2 cut(s)	202, 474
BciT130I	CCWGG	1 cut(s)	1371
BciVI	GTATCC	1 cut(s)	1430
BcnI	CCSGG	1 cut(s)	938
BcoDI	GTCTC	6 cut(s)	22, 578, 789, 891, 1436, 1439
BfaI	CTAG	4 cut(s)	90, 539, 1052, 1268
BfuI	GTATCC	1 cut(s)	1430
BglI	GCCNNNNNGGC	1 cut(s)	1372
BisI	GCNGC	8 cut(s)	502, 564, 567, 660, 951, 1272, 1352, 1476
BlpI	GCTNAGC	2 cut(s)	591, 1503
BlsI	GCNGC	8 cut(s)	503, 565, 568, 661, 952, 1273, 1353, 1477
Bme1390I	CCNGG	2 cut(s)	938, 1371
BmrFI	CCNGG	2 cut(s)	938, 1371
BmsI	GCATC	4 cut(s)	503, 784, 823, 1453
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	1155
BpmI	CTGGAG	2 cut(s)	560, 771
Bpu1102I	GCTNAGC	2 cut(s)	591, 1503
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	938
BsaI	GGTCTC	3 cut(s)	891, 1436, 1439
BsaJI	CCNNGG	3 cut(s)	1370, 1387, 1508
BsaXI	ACNNNNNCTCC	4 cut(s)	1280, 1310, 1351, 1381
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse3DI	GCAATG	1 cut(s)	770
BseBI	CCWGG	1 cut(s)	1371
BseDI	CCNNGG	3 cut(s)	1370, 1387, 1508
BseGI	GGATG	2 cut(s)	775, 999
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMI	GCAATG	1 cut(s)	770
BseMII	CTCAG	3 cut(s)	582, 982, 1331
BseRI	GAGGAG	3 cut(s)	196, 1158, 1294
BseXI	GCAGC	5 cut(s)	513, 575, 671, 937, 1363
BseYI	CCCAGC	1 cut(s)	1354
Bsh1236I	CGCG	1 cut(s)	571
BsiSI	CCGG	1 cut(s)	938
BslFI	GGGAC	2 cut(s)	584, 1109
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	6 cut(s)	22, 578, 789, 891, 1436, 1439
BsmBI	CGTCTC	1 cut(s)	578
BsmFI	GGGAC	2 cut(s)	584, 1109
Bso31I	GGTCTC	3 cut(s)	891, 1436, 1439
Bsp143I	GATC	8 cut(s)	190, 335, 711, 871, 902, 1068, 1078, 1408
Bsp1720I	GCTNAGC	2 cut(s)	591, 1503
BspACI	CCGC	3 cut(s)	566, 1271, 1476
BspCNI	CTCAG	3 cut(s)	583, 981, 1332
BspFNI	CGCG	1 cut(s)	571
BspHI	TCATGA	1 cut(s)	1604
BspPI	GGATC	4 cut(s)	185, 910, 1063, 1403
BspQI	GCTCTTC	1 cut(s)	1492
BspTNI	GGTCTC	3 cut(s)	891, 1436, 1439
BsrDI	GCAATG	1 cut(s)	770
BssECI	CCNNGG	3 cut(s)	1370, 1387, 1508
BssMI	GATC	8 cut(s)	190, 335, 711, 871, 902, 1068, 1078, 1408
BssSI	CACGAG	1 cut(s)	1450
BssT1I	CCWWGG	1 cut(s)	1508
Bst2BI	CACGAG	1 cut(s)	1450
Bst2UI	CCWGG	1 cut(s)	1371
Bst4CI	ACNGT	4 cut(s)	40, 172, 524, 1391
Bst6I	CTCTTC	2 cut(s)	134, 1492
BstC8I	GCNNGC	2 cut(s)	217, 759
BstDEI	CTNAG	8 cut(s)	462, 591, 675, 954, 968, 1340, 1503, 1551
BstDSI	CCRYGG	1 cut(s)	1387
BstF5I	GGATG	2 cut(s)	775, 999
BstFNI	CGCG	1 cut(s)	571
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	8 cut(s)	193, 338, 714, 874, 905, 1071, 1081, 1411
BstMAI	GTCTC	6 cut(s)	22, 578, 789, 891, 1436, 1439
BstMBI	GATC	8 cut(s)	190, 335, 711, 871, 902, 1068, 1078, 1408
BstMWI	GCNNNNNNNGC	3 cut(s)	577, 1372, 1472
BstNI	CCWGG	1 cut(s)	1371
BstNSI	RCATGY	3 cut(s)	35, 491, 1140
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	936, 1369
BstUI	CGCG	1 cut(s)	571
BstV1I	GCAGC	5 cut(s)	513, 575, 671, 937, 1363
BstV2I	GAAGAC	1 cut(s)	1155
BstX2I	RGATCY	1 cut(s)	1408
BstYI	RGATCY	1 cut(s)	1408
BsuI	GTATCC	1 cut(s)	1430
BtgI	CCRYGG	1 cut(s)	1387
BtsCI	GGATG	2 cut(s)	775, 999
BtsI	GCAGTG	1 cut(s)	1134
BtsIMutI	CAGTG	2 cut(s)	520, 1134
Cac8I	GCNNGC	2 cut(s)	217, 759
CaiI	CAGNNNCTG	1 cut(s)	590
CciI	TCATGA	1 cut(s)	1604
CfoI	GCGC	1 cut(s)	571
CseI	GACGC	2 cut(s)	404, 560
Csp6I	GTAC	2 cut(s)	289, 845
CviAII	CATG	8 cut(s)	32, 367, 488, 1105, 1137, 1239, 1394, 1605
CviQI	GTAC	2 cut(s)	289, 845
DdeI	CTNAG	8 cut(s)	462, 591, 675, 954, 968, 1340, 1503, 1551
DpnI	GATC	8 cut(s)	192, 337, 713, 873, 904, 1070, 1080, 1410
DpnII	GATC	8 cut(s)	190, 335, 711, 871, 902, 1068, 1078, 1408
Eam1104I	CTCTTC	2 cut(s)	134, 1492
EarI	CTCTTC	2 cut(s)	134, 1492
Eco130I	CCWWGG	1 cut(s)	1508
Eco31I	GGTCTC	3 cut(s)	891, 1436, 1439
Eco57I	CTGAAG	2 cut(s)	393, 627
EcoRII	CCWGG	1 cut(s)	1369
EcoT14I	CCWWGG	1 cut(s)	1508
ErhI	CCWWGG	1 cut(s)	1508
Esp3I	CGTCTC	1 cut(s)	578
FaeI	CATG	8 cut(s)	35, 370, 491, 1108, 1140, 1242, 1397, 1608
FalI	AAGNNNNNCTT	6 cut(s)	85, 117, 579, 611, 1285, 1317
FaqI	GGGAC	2 cut(s)	584, 1109
FatI	CATG	8 cut(s)	31, 366, 487, 1104, 1136, 1238, 1393, 1604
FauNDI	CATATG	1 cut(s)	1422
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	8 cut(s)	502, 564, 567, 660, 951, 1272, 1352, 1476
FokI	GGATG	2 cut(s)	762, 986
Fsp4HI	GCNGC	8 cut(s)	502, 564, 567, 660, 951, 1272, 1352, 1476
FspBI	CTAG	4 cut(s)	90, 539, 1052, 1268
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	8 cut(s)	502, 564, 567, 660, 951, 1272, 1352, 1476
GsaI	CCCAGC	1 cut(s)	1358
GsuI	CTGGAG	2 cut(s)	560, 771
HapII	CCGG	1 cut(s)	938
HgaI	GACGC	2 cut(s)	404, 560
HhaI	GCGC	1 cut(s)	571
Hin1II	CATG	8 cut(s)	35, 370, 491, 1108, 1140, 1242, 1397, 1608
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HindIII	AAGCTT	3 cut(s)	242, 759, 1030
HinfI	GANTC	7 cut(s)	96, 150, 263, 466, 994, 1198, 1562
HpaII	CCGG	1 cut(s)	938
HphI	GGTGA	2 cut(s)	442, 1077
Hpy166II	GTNNAC	1 cut(s)	613
Hpy8I	GTNNAC	1 cut(s)	613
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	4 cut(s)	40, 172, 524, 1391
HpyCH4IV	ACGT	1 cut(s)	1537
HpyCH4V	TGCA	6 cut(s)	4, 659, 757, 775, 814, 1238
HpyF10VI	GCNNNNNNNGC	3 cut(s)	577, 1372, 1472
HpyF3I	CTNAG	8 cut(s)	462, 591, 675, 954, 968, 1340, 1503, 1551
HpySE526I	ACGT	1 cut(s)	1537
Hsp92II	CATG	8 cut(s)	35, 370, 491, 1108, 1140, 1242, 1397, 1608
HspAI	GCGC	1 cut(s)	569
Kzo9I	GATC	8 cut(s)	190, 335, 711, 871, 902, 1068, 1078, 1408
LguI	GCTCTTC	1 cut(s)	1492
LmnI	GCTCC	3 cut(s)	209, 1124, 1301
Lsp1109I	GCAGC	5 cut(s)	513, 575, 671, 937, 1363
LweI	GCATC	4 cut(s)	503, 784, 823, 1453
MaeI	CTAG	4 cut(s)	90, 539, 1052, 1268
MaeII	ACGT	1 cut(s)	1537
MaeIII	GTNAC	7 cut(s)	6, 34, 43, 430, 957, 1181, 1589
MalI	GATC	8 cut(s)	192, 337, 713, 873, 904, 1070, 1080, 1410
MboI	GATC	8 cut(s)	190, 335, 711, 871, 902, 1068, 1078, 1408
MfeI	CAATTG	1 cut(s)	1206
MflI	RGATCY	1 cut(s)	1408
MluCI	AATT	4 cut(s)	404, 795, 890, 1206
MmeI	TCCRAC	1 cut(s)	1226
MroXI	GAANNNNTTC	1 cut(s)	1259
MseI	TTAA	6 cut(s)	78, 311, 534, 698, 1034, 1328
MslI	CAYNNNNRTG	3 cut(s)	1103, 1392, 1491
MspA1I	CMGCKG	3 cut(s)	566, 1354, 1478
MspI	CCGG	1 cut(s)	938
MspR9I	CCNGG	2 cut(s)	938, 1371
MunI	CAATTG	1 cut(s)	1206
MvaI	CCWGG	1 cut(s)	1371
MvnI	CGCG	1 cut(s)	571
MwoI	GCNNNNNNNGC	3 cut(s)	577, 1372, 1472
NciI	CCSGG	1 cut(s)	938
NdeI	CATATG	1 cut(s)	1422
NdeII	GATC	8 cut(s)	190, 335, 711, 871, 902, 1068, 1078, 1408
NlaIII	CATG	8 cut(s)	35, 370, 491, 1108, 1140, 1242, 1397, 1608
NmuCI	GTSAC	4 cut(s)	34, 43, 430, 1589
NspI	RCATGY	3 cut(s)	35, 491, 1140
PagI	TCATGA	1 cut(s)	1604
PciI	ACATGT	3 cut(s)	31, 487, 1136
PciSI	GCTCTTC	1 cut(s)	1492
PdmI	GAANNNNTTC	1 cut(s)	1259
PfeI	GAWTC	7 cut(s)	96, 150, 263, 466, 994, 1198, 1562
PkrI	GCNGC	8 cut(s)	503, 565, 568, 661, 952, 1273, 1353, 1477
PscI	ACATGT	3 cut(s)	31, 487, 1136
PshAI	GACNNNNGTC	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	1369
PspFI	CCCAGC	1 cut(s)	1354
PspGI	CCWGG	1 cut(s)	1369
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	1408
PvuII	CAGCTG	1 cut(s)	1354
RsaI	GTAC	2 cut(s)	290, 846
RsaNI	GTAC	2 cut(s)	289, 845
RseI	CAYNNNNRTG	3 cut(s)	1103, 1392, 1491
SapI	GCTCTTC	1 cut(s)	1492
SaqAI	TTAA	6 cut(s)	78, 311, 534, 698, 1034, 1328
SatI	GCNGC	8 cut(s)	502, 564, 567, 660, 951, 1272, 1352, 1476
Sau3AI	GATC	8 cut(s)	190, 335, 711, 871, 902, 1068, 1078, 1408
ScrFI	CCNGG	2 cut(s)	938, 1371
SfaNI	GCATC	4 cut(s)	503, 784, 823, 1453
SmiMI	CAYNNNNRTG	3 cut(s)	1103, 1392, 1491
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	4 cut(s)	404, 795, 890, 1206
SsiI	CCGC	3 cut(s)	566, 1271, 1476
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	4 cut(s)	90, 539, 1052, 1268
StyD4I	CCNGG	2 cut(s)	936, 1369
StyI	CCWWGG	1 cut(s)	1508
TaaI	ACNGT	4 cut(s)	40, 172, 524, 1391
TaiI	ACGT	1 cut(s)	1540
TaqI	TCGA	7 cut(s)	183, 484, 554, 822, 833, 1196, 1263
TasI	AATT	4 cut(s)	404, 795, 890, 1206
TauI	GCSGC	3 cut(s)	569, 1274, 1478
TfiI	GAWTC	7 cut(s)	96, 150, 263, 466, 994, 1198, 1562
Tru1I	TTAA	6 cut(s)	78, 311, 534, 698, 1034, 1328
Tru9I	TTAA	6 cut(s)	78, 311, 534, 698, 1034, 1328
TscAI	CASTG	2 cut(s)	527, 1134
TseFI	GTSAC	4 cut(s)	34, 43, 430, 1589
TseI	GCWGC	5 cut(s)	501, 563, 659, 950, 1351
Tsp45I	GTSAC	4 cut(s)	34, 43, 430, 1589
TspDTI	ATGAA	7 cut(s)	58, 355, 998, 1007, 1121, 1268, 1475
TspGWI	ACGGA	3 cut(s)	746, 992, 1401
TspRI	CASTG	2 cut(s)	527, 1134
XapI	RAATTY	1 cut(s)	404
XbaI	TCTAGA	2 cut(s)	89, 1051
XceI	RCATGY	3 cut(s)	35, 491, 1140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	759
XmiI	GTMKAC	1 cut(s)	612
XmnI	GAANNNNTTC	1 cut(s)	1259
XspI	CTAG	4 cut(s)	90, 539, 1052, 1268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.