FvH4_3g21730

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
14782551 .. 14788283
5733 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21730.t1

Sequence Viewer

Length: 1602 bp
ATGCAGCTTCATATATCACCCAGCTTGAGGCATGTCACAGTTTTCCCAGGGAAGGAAGTTAGAGAATTCATCAAGGTGAAAGTCGGGTCGAGACGGCTTTCATATCGGATGCTCTTCTATTCTATCCTCTTCTTCACATTTATTCTCAGGTTTGTGTTTGTCATGACAGCAGTGGACACCATTGATGGAGAAACCAGGTGCTCTACAATAGGTTGCTTGGGGAAAAGACTAGGACCAAGGATTTTGGGAAGAAGGCTTGAATCAAGTGTCCCAGAAGTTGTTTACCAAGTGTTAGAAGAGCCCATTGGCAAAGATGAATTAAAAGGAAGATCTGATATTCCCCAGTCCCTAGATGAGTTTATGGCTGAGATAAAGGACAGCAATATAGATGCAAGGACTTTTGCTATCAAGCTCAGAGAGATGATCACACTACTTGAAGAAAGAACCAGAAATGCGAAAATCCAAGAGTACTTGTACAGACATGTAGCATCAAGCAGCATACCTAAACAGCTTCACTGCCTAGCCTTGAGATTAGCCAATGAGCACTCAACAAATGCAGCCGCTCGTCTCCAGCTCCCGTCTGCTGAATTTGTCCCTGCCCTTGTCGATAATTCCTTCTTCCATTTTGTTCTCGCCTCAGATAATATCCTTGCTGCTTCTGTTGTTGCTACTTCCCTGGTCCAAAACTCATTACGCCCTCACAAAGTTGTCCTCCACATAATCACTGACAGGAAGACATACTGCCCTATGCAAGCATGGTTTTCATTGCATCCTTTATCCCCTGCAATTATTGAAGTCAAGGCATTACACCATTTTGATTGGTTTTCAAAGGGAAAGGTGCCAGTGTTGGAAGCAATGGAGAAAGACCAAAAAGTGAGATCACAGTTCAGAGGAGGATCATCAGCCATTGTGGCAAACAATACTGATAAGCCTAATGTCATTGCCGCAAAGTTGCAGGCACTTAGTCCCAAGTATAATTCGATCATGAATCATATCAGAATACATCTACCAGAGATGTTTCCTAGTCTCAACAAGGTTGTGTTCCTGGATGATGACGTAGTAGTTCAGACTGATCTTTCCCCACTGTGGGATATCGATATGAATGGAAAGGTCAACGGAGCGGTTGAAACATGCAGGGGAGGAGATAAATTTGTTATGTCGAAGAAGTTTAAAAGCTACCTGAACTTCTCTCATCCTTTGATATCGAACAACTTTGACCCGAATACATGTGCTTGGGCTTATGGCATGAACATTTTCGATCTAGAAGCTTGGAGGAAAACTAACATAAGTCGTACATATCACTATTGGCTTGAACAGAACTTGAAATCAGACCTGAGCTTATGGCAGCTAGGAACATTACCCCCTGGCCTAATAGCATTCCATGGCCATGTCCATGTTATTGATCCTTTTTGGCACATGTTGGGATTTGGATATCAGGAAAACACAAGTGCTGCTGATGCCAAGAGTGCAGGTGTCATCCACTTTAATGGGAGGGCAAAGCCCTGGTTAGAGATTGCATTTCCCAAACTTCGACCACTTTGGGCAAAGTATGTAGACTTCTCGGATAAATTCATCAAGGGCTGTCATATTAGGGAATCTTAG

Protein Analysis

534

Amino Acids

60.65

Weight (kDa)

9.15

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 211 - 505 6.3e-73 Glycosyl transferase family 8
Glyco_transf_24 PF18404 330 - 381 9e-06 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013111)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1460
Acc36I ACCTGC 1 cut(s) 1460
AccB1I GGYRCC 1 cut(s) 838
AccBSI CCGCTC 2 cut(s) 563, 1121
AccI GTMKAC 1 cut(s) 1554
AciI CCGC 3 cut(s) 561, 945, 1121
AclWI GGATC 2 cut(s) 904, 1397
AcoI YGGCCR 1 cut(s) 1384
AcsI RAATTY 4 cut(s) 65, 587, 1148, 1568
AfaI GTAC 3 cut(s) 470, 476, 1294
AfiI CCNNNNNNNGG 4 cut(s) 27, 52, 1086, 1087
AflIII ACRYGT 3 cut(s) 481, 1226, 1416
AgsI TTSAA 7 cut(s) 260, 437, 794, 828, 1127, 1313, 1324
AjnI CCWGG 6 cut(s) 46, 194, 675, 1044, 1363, 1502
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 9 cut(s) 7, 24, 412, 511, 574, 1176, 1268, 1338, 1348
AluI AGCT 9 cut(s) 7, 24, 412, 511, 574, 1176, 1268, 1338, 1348
Alw21I GWGCWC 2 cut(s) 203, 546
Alw26I GTCTC 3 cut(s) 85, 572, 1031
AlwI GGATC 2 cut(s) 904, 1397
AoxI GGCC 2 cut(s) 1366, 1384
ApeKI GCWGC 6 cut(s) 4, 495, 557, 653, 1345, 1451
ApoI RAATTY 4 cut(s) 65, 587, 1148, 1568
Asp700I GAANNNNTTC 1 cut(s) 1253
AspS9I GGNCC 2 cut(s) 233, 679
AsuHPI GGTGA 2 cut(s) 9, 88
AvaII GGWCC 2 cut(s) 233, 679
BalI TGGCCA 1 cut(s) 1386
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 1 cut(s) 303
BarI GAAGNNNNNNTAC 2 cut(s) 1541, 1573
BbsI GAAGAC 1 cut(s) 740
Bbv12I GWGCWC 2 cut(s) 203, 546
BbvI GCAGC 6 cut(s) 16, 507, 569, 640, 1357, 1438
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 6 cut(s) 48, 196, 677, 1046, 1365, 1504
BclI TGATCA 1 cut(s) 423
BcoDI GTCTC 3 cut(s) 85, 572, 1031
BfaI CTAG 6 cut(s) 230, 350, 521, 1023, 1262, 1349
BfuAI ACCTGC 1 cut(s) 1460
BglI GCCNNNNNGGC 1 cut(s) 911
BglII AGATCT 1 cut(s) 329
BisI GCNGC 8 cut(s) 5, 496, 558, 561, 654, 945, 1346, 1452
BlsI GCNGC 8 cut(s) 6, 497, 559, 562, 655, 946, 1347, 1453
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 6 cut(s) 48, 196, 677, 1046, 1365, 1504
Bme18I GGWCC 2 cut(s) 233, 679
BmgT120I GGNCC 2 cut(s) 233, 679
BmiI GGNNCC 1 cut(s) 840
BmrFI CCNGG 6 cut(s) 48, 196, 677, 1046, 1365, 1504
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 5 cut(s) 99, 379, 497, 778, 1447
BmuI ACTGGG 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 740
BpmI CTGGAG 1 cut(s) 554
Bpu10I CCTNAGC 1 cut(s) 1334
BpuEI CTTGAG 2 cut(s) 46, 547
Bsa29I ATCGAT 1 cut(s) 1095
BsaJI CCNNGG 7 cut(s) 46, 47, 236, 675, 1363, 1381, 1502
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 52, 1086, 1087
Bse1I ACTGG 2 cut(s) 343, 842
Bse3DI GCAATG 3 cut(s) 764, 861, 939
BseBI CCWGG 6 cut(s) 48, 196, 677, 1046, 1365, 1504
BseCI ATCGAT 1 cut(s) 1095
BseDI CCNNGG 7 cut(s) 46, 47, 236, 675, 1363, 1381, 1502
BseGI GGATG 5 cut(s) 114, 769, 1054, 1192, 1476
BseLI CCNNNNNNNGG 4 cut(s) 27, 52, 1086, 1087
BseMI GCAATG 3 cut(s) 764, 861, 939
BseMII CTCAG 5 cut(s) 160, 357, 427, 651, 1325
BseNI ACTGG 2 cut(s) 343, 842
BseRI GAGGAG 2 cut(s) 906, 1155
BseXI GCAGC 6 cut(s) 16, 507, 569, 640, 1357, 1438
BseYI CCCAGC 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 1488
BshFI GGCC 2 cut(s) 1368, 1386
BshNI GGYRCC 1 cut(s) 838
BshVI ATCGAT 1 cut(s) 1095
BsiHKAI GWGCWC 2 cut(s) 203, 546
BslFI GGGAC 4 cut(s) 254, 331, 578, 951
BslI CCNNNNNNNGG 4 cut(s) 27, 52, 1086, 1087
BsmAI GTCTC 3 cut(s) 85, 572, 1031
BsmBI CGTCTC 2 cut(s) 85, 572
BsmFI GGGAC 4 cut(s) 254, 331, 578, 951
BsmI GAATGC 1 cut(s) 1376
BsnI GGCC 2 cut(s) 1368, 1386
Bsp1286I GDGCHC 3 cut(s) 203, 303, 546
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 8 cut(s) 329, 423, 878, 896, 981, 1072, 1258, 1402
Bsp19I CCATGG 1 cut(s) 1381
BspACI CCGC 3 cut(s) 561, 945, 1121
BspANI GGCC 2 cut(s) 1368, 1386
BspCNI CTCAG 5 cut(s) 159, 358, 426, 650, 1326
BspDI ATCGAT 1 cut(s) 1095
BspHI TCATGA 2 cut(s) 162, 984
BspLI GGNNCC 1 cut(s) 840
BspMI ACCTGC 1 cut(s) 1460
BspPI GGATC 2 cut(s) 904, 1397
BspQI GCTCTTC 2 cut(s) 119, 291
BspT107I GGYRCC 1 cut(s) 838
BsrBI CCGCTC 2 cut(s) 563, 1121
BsrDI GCAATG 3 cut(s) 764, 861, 939
BsrGI TGTACA 1 cut(s) 474
BsrI ACTGG 2 cut(s) 343, 842
BssECI CCNNGG 7 cut(s) 46, 47, 236, 675, 1363, 1381, 1502
BssMI GATC 8 cut(s) 329, 423, 878, 896, 981, 1072, 1258, 1402
BssT1I CCWWGG 2 cut(s) 236, 1381
Bst2UI CCWGG 6 cut(s) 48, 196, 677, 1046, 1365, 1504
Bst4CI ACNGT 3 cut(s) 40, 885, 1086
Bst6I CTCTTC 3 cut(s) 119, 134, 291
BstAUI TGTACA 1 cut(s) 474
BstC8I GCNNGC 2 cut(s) 753, 957
BstDEI CTNAG 7 cut(s) 146, 366, 413, 637, 962, 1334, 1599
BstDSI CCRYGG 1 cut(s) 1381
BstF5I GGATG 5 cut(s) 114, 769, 1054, 1192, 1476
BstKTI GATC 8 cut(s) 332, 426, 881, 899, 984, 1075, 1261, 1405
BstMAI GTCTC 3 cut(s) 85, 572, 1031
BstMBI GATC 8 cut(s) 329, 423, 878, 896, 981, 1072, 1258, 1402
BstMWI GCNNNNNNNGC 3 cut(s) 911, 1457, 1466
BstNI CCWGG 6 cut(s) 48, 196, 677, 1046, 1365, 1504
BstNSI RCATGY 5 cut(s) 35, 485, 1134, 1230, 1420
BstSCI CCNGG 6 cut(s) 46, 194, 675, 1044, 1363, 1502
BstV1I GCAGC 6 cut(s) 16, 507, 569, 640, 1357, 1438
BstV2I GAAGAC 1 cut(s) 740
BstX2I RGATCY 1 cut(s) 329
BstXI CCANNNNNNTGG 1 cut(s) 1487
BstYI RGATCY 1 cut(s) 329
Bsu15I ATCGAT 1 cut(s) 1095
BsuRI GGCC 2 cut(s) 1368, 1386
BsuTUI ATCGAT 1 cut(s) 1095
BtgI CCRYGG 1 cut(s) 1381
BtsCI GGATG 5 cut(s) 114, 769, 1054, 1192, 1476
BtsI GCAGTG 2 cut(s) 177, 514
BtsIMutI CAGTG 5 cut(s) 177, 514, 723, 849, 1082
BveI ACCTGC 1 cut(s) 1460
Cac8I GCNNGC 2 cut(s) 753, 957
CciI TCATGA 2 cut(s) 162, 984
Cfr13I GGNCC 2 cut(s) 233, 679
ClaI ATCGAT 1 cut(s) 1095
CsiI ACCWGGT 1 cut(s) 194
Csp6I GTAC 3 cut(s) 469, 475, 1293
CviQI GTAC 3 cut(s) 469, 475, 1293
DdeI CTNAG 7 cut(s) 146, 366, 413, 637, 962, 1334, 1599
DpnI GATC 8 cut(s) 331, 425, 880, 898, 983, 1074, 1260, 1404
DpnII GATC 8 cut(s) 329, 423, 878, 896, 981, 1072, 1258, 1402
DraI TTTAAA 1 cut(s) 1171
EaeI YGGCCR 1 cut(s) 1384
Eam1104I CTCTTC 3 cut(s) 119, 134, 291
EarI CTCTTC 3 cut(s) 119, 134, 291
Eco130I CCWWGG 2 cut(s) 236, 1381
Eco24I GRGCYC 1 cut(s) 303
Eco32I GATATC 3 cut(s) 1093, 1203, 1433
Eco47I GGWCC 2 cut(s) 233, 679
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 6 cut(s) 46, 194, 675, 1044, 1363, 1502
EcoRV GATATC 3 cut(s) 1093, 1203, 1433
EcoT14I CCWWGG 2 cut(s) 236, 1381
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 2 cut(s) 236, 1381
Esp3I CGTCTC 2 cut(s) 85, 572
FaqI GGGAC 4 cut(s) 254, 331, 578, 951
FbaI TGATCA 1 cut(s) 423
FblI GTMKAC 1 cut(s) 1554
Fnu4HI GCNGC 8 cut(s) 5, 496, 558, 561, 654, 945, 1346, 1452
FokI GGATG 5 cut(s) 121, 756, 1061, 1179, 1463
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 8 cut(s) 5, 496, 558, 561, 654, 945, 1346, 1452
FspBI CTAG 6 cut(s) 230, 350, 521, 1023, 1262, 1349
GluI GCNGC 8 cut(s) 5, 496, 558, 561, 654, 945, 1346, 1452
GsaI CCCAGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 2 cut(s) 1368, 1386
HincII GTYRAC 1 cut(s) 1114
HindII GTYRAC 1 cut(s) 1114
HindIII AAGCTT 1 cut(s) 1266
HinfI GANTC 3 cut(s) 260, 988, 1595
HphI GGTGA 2 cut(s) 9, 88
Hpy166II GTNNAC 4 cut(s) 175, 283, 1114, 1555
Hpy188I TCNGA 9 cut(s) 108, 334, 416, 640, 890, 998, 1068, 1330, 1564
Hpy188III TCNNGA 5 cut(s) 90, 163, 985, 1262, 1436
Hpy8I GTNNAC 4 cut(s) 175, 283, 1114, 1555
HpyAV CCTTC 3 cut(s) 46, 246, 625
HpyCH4III ACNGT 3 cut(s) 40, 885, 1086
HpyCH4IV ACGT 1 cut(s) 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 911, 1457, 1466
HpyF3I CTNAG 7 cut(s) 146, 366, 413, 637, 962, 1334, 1599
HpySE526I ACGT 1 cut(s) 1056
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 8 cut(s) 329, 423, 878, 896, 981, 1072, 1258, 1402
LguI GCTCTTC 2 cut(s) 119, 291
LmnI GCTCC 2 cut(s) 579, 1118
Lsp1109I GCAGC 6 cut(s) 16, 507, 569, 640, 1357, 1438
LweI GCATC 5 cut(s) 99, 379, 497, 778, 1447
MabI ACCWGGT 1 cut(s) 194
MaeI CTAG 6 cut(s) 230, 350, 521, 1023, 1262, 1349
MaeII ACGT 1 cut(s) 1056
MaeIII GTNAC 1 cut(s) 34
MalI GATC 8 cut(s) 331, 425, 880, 898, 983, 1074, 1260, 1404
MbiI CCGCTC 2 cut(s) 563, 1121
MboI GATC 8 cut(s) 329, 423, 878, 896, 981, 1072, 1258, 1402
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 3 cut(s) 203, 303, 546
MlsI TGGCCA 1 cut(s) 1386
MluCI AATT 8 cut(s) 65, 317, 587, 610, 786, 976, 1148, 1568
MluNI TGGCCA 1 cut(s) 1386
MmeI TCCRAC 1 cut(s) 828
Mox20I TGGCCA 1 cut(s) 1386
MroXI GAANNNNTTC 1 cut(s) 1253
MscI TGGCCA 1 cut(s) 1386
MseI TTAA 3 cut(s) 320, 1170, 1485
MslI CAYNNNNRTG 4 cut(s) 74, 1386, 1392, 1485
Msp20I TGGCCA 1 cut(s) 1386
MspR9I CCNGG 6 cut(s) 48, 196, 677, 1046, 1365, 1504
Mva1269I GAATGC 1 cut(s) 1376
MvaI CCWGG 6 cut(s) 48, 196, 677, 1046, 1365, 1504
MwoI GCNNNNNNNGC 3 cut(s) 911, 1457, 1466
NcoI CCATGG 1 cut(s) 1381
NdeII GATC 8 cut(s) 329, 423, 878, 896, 981, 1072, 1258, 1402
NlaIV GGNNCC 1 cut(s) 840
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 5 cut(s) 35, 485, 1134, 1230, 1420
PagI TCATGA 2 cut(s) 162, 984
PaqCI CACCTGC 1 cut(s) 1460
PasI CCCWGGG 1 cut(s) 47
PciI ACATGT 3 cut(s) 481, 1226, 1416
PciSI GCTCTTC 2 cut(s) 119, 291
PctI GAATGC 1 cut(s) 1376
PdmI GAANNNNTTC 1 cut(s) 1253
PfeI GAWTC 3 cut(s) 260, 988, 1595
PfoI TCCNGGA 1 cut(s) 1044
PkrI GCNGC 8 cut(s) 6, 497, 559, 562, 655, 946, 1347, 1453
PscI ACATGT 3 cut(s) 481, 1226, 1416
Psp6I CCWGG 6 cut(s) 46, 194, 675, 1044, 1363, 1502
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 6 cut(s) 46, 194, 675, 1044, 1363, 1502
PspN4I GGNNCC 1 cut(s) 840
PspPI GGNCC 2 cut(s) 233, 679
PsuI RGATCY 1 cut(s) 329
RsaI GTAC 3 cut(s) 470, 476, 1294
RsaNI GTAC 3 cut(s) 469, 475, 1293
RseI CAYNNNNRTG 4 cut(s) 74, 1386, 1392, 1485
SapI GCTCTTC 2 cut(s) 119, 291
SaqAI TTAA 3 cut(s) 320, 1170, 1485
SatI GCNGC 8 cut(s) 5, 496, 558, 561, 654, 945, 1346, 1452
Sau3AI GATC 8 cut(s) 329, 423, 878, 896, 981, 1072, 1258, 1402
Sau96I GGNCC 2 cut(s) 233, 679
ScaI AGTACT 1 cut(s) 470
ScrFI CCNGG 6 cut(s) 48, 196, 677, 1046, 1365, 1504
SduI GDGCHC 3 cut(s) 203, 303, 546
SexAI ACCWGGT 1 cut(s) 194
SfaNI GCATC 5 cut(s) 99, 379, 497, 778, 1447
SinI GGWCC 2 cut(s) 233, 679
SmiMI CAYNNNNRTG 4 cut(s) 74, 1386, 1392, 1485
SmlI CTYRAG 2 cut(s) 25, 526
SmoI CTYRAG 2 cut(s) 25, 526
Sse9I AATT 8 cut(s) 65, 317, 587, 610, 786, 976, 1148, 1568
SsiI CCGC 3 cut(s) 561, 945, 1121
SspMI CTAG 6 cut(s) 230, 350, 521, 1023, 1262, 1349
StyD4I CCNGG 6 cut(s) 46, 194, 675, 1044, 1363, 1502
StyI CCWWGG 2 cut(s) 236, 1381
TaaI ACNGT 3 cut(s) 40, 885, 1086
TaiI ACGT 1 cut(s) 1059
TaqI TCGA 8 cut(s) 89, 606, 980, 1095, 1160, 1205, 1257, 1531
TasI AATT 8 cut(s) 65, 317, 587, 610, 786, 976, 1148, 1568
TatI WGTACW 2 cut(s) 468, 474
TauI GCSGC 2 cut(s) 563, 947
TfiI GAWTC 3 cut(s) 260, 988, 1595
Tru1I TTAA 3 cut(s) 320, 1170, 1485
Tru9I TTAA 3 cut(s) 320, 1170, 1485
TscAI CASTG 5 cut(s) 177, 521, 730, 849, 1089
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 6 cut(s) 4, 495, 557, 653, 1345, 1451
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 8 cut(s) 58, 90, 330, 753, 1001, 1115, 1262, 1561
TspGWI ACGGA 1 cut(s) 1131
TspRI CASTG 5 cut(s) 177, 521, 730, 849, 1089
VpaK11BI GGWCC 2 cut(s) 233, 679
XapI RAATTY 4 cut(s) 65, 587, 1148, 1568
XbaI TCTAGA 1 cut(s) 1261
XceI RCATGY 5 cut(s) 35, 485, 1134, 1230, 1420
XmiI GTMKAC 1 cut(s) 1554
XmnI GAANNNNTTC 1 cut(s) 1253
XspI CTAG 6 cut(s) 230, 350, 521, 1023, 1262, 1349
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.