Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022939.1

Orthogroup ID

OG0013111

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 3544

Gene Structure 3543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022939.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1442 bp

atgcagcttcatatatcacccagcttgaggcatgtgacagttttcccagggaaggaagttagagaattcatcaaggtgaaagtcgggtcgagacggctttcgtatcggatgctcttctattccattctcttcttcacattcattctcaggtttgtgtttgtcatgacagcagtggacaccattgatggagaaaccaggtgctctacaataggttgcttggggaaaaaactaggaccaaggattttgggaagaaggcttgaatcaagtgtcccagaagttgtttaccaagtattagaagaacccattggcaaagatgaattacaaggaagatctgatattccccagtccctagatgagtttatgactgagataaaggacagcaacatagacgcaaggacttttgctgtcaagctcagagagatgatcacactacttgaggaaagaaccagaaatgcgaaaatccaagagtacttgtacaggcatgtagcatcaagcagcatacctaaacagcttcactgcctagccttgaggttggccaacgaacactcaaccaatgcagccgctcgtctccagctcccgtctgctgaatttgtccctgctcttgtcgataattccttcttccactttgtcctcgcctcagacaatgtccttgccgcttctgttgttgccacttccctggtccaaaactcattgcgccctcacaaagttgtcctccacataatcacggacaggaagacatactgtccaatgcaagcatggttttcattgcatcctttatcccctgcgattattgaggtcaaggcattacaccattttgattggttttcaaagggaaaggtgccagtgttggaagcaatggagaaagaccaaaaagtgagatcacagttcagaggagggtcatcagccattgtggcaaacaatactgataagcctaatgtcattgcagcaaagttgcaggcacttagtcccaagtataattcaatcatgaatcatatcagaatacatctaccagagatgtttcctagtctcaacaaggttgtgttcctggatgatgacgtagtagttcagactgatctttccccactgtgggatattgatatgaatggaaaggtcaacggagcggttgaaacatgcaggggaaaagataaatttgttatgtcgaagaagtttaagagctacctcaacttctcccatcctttgatatcgaacaacttcgaccccaatacatgtgcatgggcttatggcatgaacatattcgatctagaggcttggaggaaaactaacataagccgtacatatcactattggattgaacagaacttgaaatcagacctgagtttgtggcagctaggaacattaccccctggcctaatagcattccatggccatgtccatgttattgatcctttttggcacatgttgggatttggatatcaggaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

480

Amino Acids

54.73

Weight (kDa)

8.93

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54690
fragaria_vesca	FvH4_3g21730
malus_domestica	MD03G1212400.v1.1 MD11G1227600.v1.1
prunus_persica	Prupe.4G201700_v2.0.a1 Prupe.4G201700_v2.0.a1
pyrus_communis	pycom03g16110 pycom11g20030
rosa_chinensis	RchiOBHm_Chr5g0037221
rosa_laevigata	RLG00000033766
rosa_multiflora	Rmu_sc0006633.1_g000005 Rmu_sc0022939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043750
rosa_rugosa	Rorug05G0163700
rosa_samantha	Rh5AG253400 Rh5CG288000 Rh5DG263800
rosa_wichuraiana	Rw5G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	838
AccBSI	CCGCTC	2 cut(s)	563, 1121
AciI	CCGC	3 cut(s)	561, 654, 1121
AclWI	GGATC	1 cut(s)	1397
AcoI	YGGCCR	2 cut(s)	534, 1384
AcsI	RAATTY	3 cut(s)	65, 587, 1148
AfaI	GTAC	3 cut(s)	470, 476, 1294
AfiI	CCNNNNNNNGG	4 cut(s)	27, 52, 1086, 1087
AflIII	ACRYGT	2 cut(s)	1226, 1416
AgsI	TTSAA	6 cut(s)	260, 828, 981, 1127, 1313, 1324
AhdI	GACNNNNNGTC	1 cut(s)	741
AjnI	CCWGG	5 cut(s)	46, 194, 675, 1044, 1363
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	7 cut(s)	7, 24, 412, 511, 574, 1176, 1348
AluI	AGCT	7 cut(s)	7, 24, 412, 511, 574, 1176, 1348
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	3 cut(s)	85, 572, 1031
AlwI	GGATC	1 cut(s)	1397
AoxI	GGCC	3 cut(s)	534, 1366, 1384
ApeKI	GCWGC	5 cut(s)	4, 495, 557, 944, 1345
ApoI	RAATTY	3 cut(s)	65, 587, 1148
Asp700I	GAANNNNTTC	2 cut(s)	1211, 1253
AspLEI	GCGC	1 cut(s)	696
AspS9I	GGNCC	2 cut(s)	233, 679
AsuHPI	GGTGA	2 cut(s)	9, 88
AvaII	GGWCC	2 cut(s)	233, 679
BalI	TGGCCA	2 cut(s)	536, 1386
BanI	GGYRCC	1 cut(s)	838
BbsI	GAAGAC	1 cut(s)	740
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	5 cut(s)	16, 507, 569, 956, 1357
BccI	CCATC	2 cut(s)	179, 1200
BceAI	ACGGC	2 cut(s)	110, 1275
BciT130I	CCWGG	5 cut(s)	48, 196, 677, 1046, 1365
BclI	TGATCA	1 cut(s)	423
BcoDI	GTCTC	3 cut(s)	85, 572, 1031
BfaI	CTAG	6 cut(s)	230, 350, 521, 1023, 1262, 1349
BglI	GCCNNNNNGGC	1 cut(s)	911
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	7 cut(s)	5, 496, 558, 561, 654, 945, 1346
BlsI	GCNGC	7 cut(s)	6, 497, 559, 562, 655, 946, 1347
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	5 cut(s)	48, 196, 677, 1046, 1365
Bme18I	GGWCC	2 cut(s)	233, 679
BmeRI	GACNNNNNGTC	1 cut(s)	741
BmgT120I	GGNCC	2 cut(s)	233, 679
BmiI	GGNNCC	1 cut(s)	840
BmrFI	CCNGG	5 cut(s)	48, 196, 677, 1046, 1365
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	3 cut(s)	99, 497, 778
BmuI	ACTGGG	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	740
BpmI	CTGGAG	1 cut(s)	554
BpuEI	CTTGAG	3 cut(s)	46, 455, 547
BsaJI	CCNNGG	6 cut(s)	46, 47, 236, 675, 1363, 1381
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 52, 1086, 1087
Bse1I	ACTGG	2 cut(s)	343, 842
Bse3DI	GCAATG	4 cut(s)	689, 764, 861, 939
BseBI	CCWGG	5 cut(s)	48, 196, 677, 1046, 1365
BseDI	CCNNGG	6 cut(s)	46, 47, 236, 675, 1363, 1381
BseGI	GGATG	4 cut(s)	114, 769, 1054, 1192
BseLI	CCNNNNNNNGG	4 cut(s)	27, 52, 1086, 1087
BseMI	GCAATG	4 cut(s)	689, 764, 861, 939
BseMII	CTCAG	5 cut(s)	160, 357, 427, 651, 1325
BseNI	ACTGG	2 cut(s)	343, 842
BseRI	GAGGAG	1 cut(s)	906
BseXI	GCAGC	5 cut(s)	16, 507, 569, 956, 1357
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	3 cut(s)	536, 1368, 1386
BshNI	GGYRCC	1 cut(s)	838
BsiHKAI	GWGCWC	1 cut(s)	203
BslFI	GGGAC	4 cut(s)	254, 331, 578, 951
BslI	CCNNNNNNNGG	4 cut(s)	27, 52, 1086, 1087
BsmAI	GTCTC	3 cut(s)	85, 572, 1031
BsmBI	CGTCTC	2 cut(s)	85, 572
BsmFI	GGGAC	4 cut(s)	254, 331, 578, 951
BsmI	GAATGC	1 cut(s)	1376
BsnI	GGCC	3 cut(s)	536, 1368, 1386
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	6 cut(s)	329, 423, 878, 1072, 1258, 1402
Bsp19I	CCATGG	1 cut(s)	1381
BspACI	CCGC	3 cut(s)	561, 654, 1121
BspANI	GGCC	3 cut(s)	536, 1368, 1386
BspCNI	CTCAG	5 cut(s)	159, 358, 426, 650, 1326
BspHI	TCATGA	2 cut(s)	162, 984
BspLI	GGNNCC	1 cut(s)	840
BspPI	GGATC	1 cut(s)	1397
BspQI	GCTCTTC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	838
BsrBI	CCGCTC	2 cut(s)	563, 1121
BsrDI	GCAATG	4 cut(s)	689, 764, 861, 939
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	343, 842
BssECI	CCNNGG	6 cut(s)	46, 47, 236, 675, 1363, 1381
BssMI	GATC	6 cut(s)	329, 423, 878, 1072, 1258, 1402
BssT1I	CCWWGG	2 cut(s)	236, 1381
Bst2UI	CCWGG	5 cut(s)	48, 196, 677, 1046, 1365
Bst4CI	ACNGT	4 cut(s)	40, 743, 885, 1086
Bst6I	CTCTTC	2 cut(s)	119, 134
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	753, 957
BstDEI	CTNAG	6 cut(s)	146, 366, 413, 637, 962, 1334
BstDSI	CCRYGG	1 cut(s)	1381
BstF5I	GGATG	4 cut(s)	114, 769, 1054, 1192
BstHHI	GCGC	1 cut(s)	696
BstKTI	GATC	6 cut(s)	332, 426, 881, 1075, 1261, 1405
BstMAI	GTCTC	3 cut(s)	85, 572, 1031
BstMBI	GATC	6 cut(s)	329, 423, 878, 1072, 1258, 1402
BstMWI	GCNNNNNNNGC	1 cut(s)	911
BstNI	CCWGG	5 cut(s)	48, 196, 677, 1046, 1365
BstNSI	RCATGY	5 cut(s)	35, 485, 1134, 1230, 1420
BstSCI	CCNGG	5 cut(s)	46, 194, 675, 1044, 1363
BstV1I	GCAGC	5 cut(s)	16, 507, 569, 956, 1357
BstV2I	GAAGAC	1 cut(s)	740
BstX2I	RGATCY	1 cut(s)	329
BstXI	CCANNNNNNTGG	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	3 cut(s)	536, 1368, 1386
BtgI	CCRYGG	1 cut(s)	1381
BtsCI	GGATG	4 cut(s)	114, 769, 1054, 1192
BtsI	GCAGTG	2 cut(s)	177, 514
BtsIMutI	CAGTG	4 cut(s)	177, 514, 849, 1082
Cac8I	GCNNGC	2 cut(s)	753, 957
CciI	TCATGA	2 cut(s)	162, 984
CfoI	GCGC	1 cut(s)	696
Cfr13I	GGNCC	2 cut(s)	233, 679
CseI	GACGC	1 cut(s)	398
CsiI	ACCWGGT	1 cut(s)	194
Csp6I	GTAC	3 cut(s)	469, 475, 1293
CviQI	GTAC	3 cut(s)	469, 475, 1293
DdeI	CTNAG	6 cut(s)	146, 366, 413, 637, 962, 1334
DpnI	GATC	6 cut(s)	331, 425, 880, 1074, 1260, 1404
DpnII	GATC	6 cut(s)	329, 423, 878, 1072, 1258, 1402
DriI	GACNNNNNGTC	1 cut(s)	741
EaeI	YGGCCR	2 cut(s)	534, 1384
Eam1104I	CTCTTC	2 cut(s)	119, 134
Eam1105I	GACNNNNNGTC	1 cut(s)	741
EarI	CTCTTC	2 cut(s)	119, 134
Eco130I	CCWWGG	2 cut(s)	236, 1381
Eco32I	GATATC	2 cut(s)	1203, 1433
Eco47I	GGWCC	2 cut(s)	233, 679
EcoRI	GAATTC	1 cut(s)	65
EcoRII	CCWGG	5 cut(s)	46, 194, 675, 1044, 1363
EcoRV	GATATC	2 cut(s)	1203, 1433
EcoT14I	CCWWGG	2 cut(s)	236, 1381
ErhI	CCWWGG	2 cut(s)	236, 1381
Esp3I	CGTCTC	2 cut(s)	85, 572
FaqI	GGGAC	4 cut(s)	254, 331, 578, 951
FbaI	TGATCA	1 cut(s)	423
Fnu4HI	GCNGC	7 cut(s)	5, 496, 558, 561, 654, 945, 1346
FokI	GGATG	4 cut(s)	121, 756, 1061, 1179
Fsp4HI	GCNGC	7 cut(s)	5, 496, 558, 561, 654, 945, 1346
FspBI	CTAG	6 cut(s)	230, 350, 521, 1023, 1262, 1349
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	7 cut(s)	5, 496, 558, 561, 654, 945, 1346
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	3 cut(s)	536, 1368, 1386
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	696
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HinfI	GANTC	2 cut(s)	260, 988
HphI	GGTGA	2 cut(s)	9, 88
Hpy166II	GTNNAC	3 cut(s)	175, 283, 1114
Hpy188I	TCNGA	8 cut(s)	108, 334, 416, 640, 890, 998, 1068, 1330
Hpy188III	TCNNGA	5 cut(s)	90, 163, 985, 1262, 1436
Hpy8I	GTNNAC	3 cut(s)	175, 283, 1114
HpyAV	CCTTC	3 cut(s)	46, 246, 625
HpyCH4III	ACNGT	4 cut(s)	40, 743, 885, 1086
HpyCH4IV	ACGT	1 cut(s)	1056
HpyCH4V	TGCA	8 cut(s)	4, 557, 751, 769, 944, 955, 1134, 1232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	911
HpyF3I	CTNAG	6 cut(s)	146, 366, 413, 637, 962, 1334
HpySE526I	ACGT	1 cut(s)	1056
HspAI	GCGC	1 cut(s)	694
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	6 cut(s)	329, 423, 878, 1072, 1258, 1402
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	2 cut(s)	579, 1118
Lsp1109I	GCAGC	5 cut(s)	16, 507, 569, 956, 1357
LweI	GCATC	3 cut(s)	99, 497, 778
MabI	ACCWGGT	1 cut(s)	194
MaeI	CTAG	6 cut(s)	230, 350, 521, 1023, 1262, 1349
MaeII	ACGT	1 cut(s)	1056
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	6 cut(s)	331, 425, 880, 1074, 1260, 1404
MbiI	CCGCTC	2 cut(s)	563, 1121
MboI	GATC	6 cut(s)	329, 423, 878, 1072, 1258, 1402
MboII	GAAGA	9 cut(s)	106, 121, 124, 261, 308, 339, 610, 745, 1174
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	203
MlsI	TGGCCA	2 cut(s)	536, 1386
MluCI	AATT	6 cut(s)	65, 317, 587, 610, 976, 1148
MluNI	TGGCCA	2 cut(s)	536, 1386
MmeI	TCCRAC	1 cut(s)	828
Mox20I	TGGCCA	2 cut(s)	536, 1386
MroXI	GAANNNNTTC	2 cut(s)	1211, 1253
MscI	TGGCCA	2 cut(s)	536, 1386
MseI	TTAA	1 cut(s)	1170
MslI	CAYNNNNRTG	4 cut(s)	74, 1231, 1386, 1392
Msp20I	TGGCCA	2 cut(s)	536, 1386
MspR9I	CCNGG	5 cut(s)	48, 196, 677, 1046, 1365
Mva1269I	GAATGC	1 cut(s)	1376
MvaI	CCWGG	5 cut(s)	48, 196, 677, 1046, 1365
MwoI	GCNNNNNNNGC	1 cut(s)	911
NcoI	CCATGG	1 cut(s)	1381
NdeII	GATC	6 cut(s)	329, 423, 878, 1072, 1258, 1402
NlaIV	GGNNCC	1 cut(s)	840
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	5 cut(s)	35, 485, 1134, 1230, 1420
PagI	TCATGA	2 cut(s)	162, 984
PasI	CCCWGGG	1 cut(s)	47
PciI	ACATGT	2 cut(s)	1226, 1416
PciSI	GCTCTTC	1 cut(s)	119
PctI	GAATGC	1 cut(s)	1376
PdmI	GAANNNNTTC	2 cut(s)	1211, 1253
PfeI	GAWTC	2 cut(s)	260, 988
PflFI	GACNNNGTC	1 cut(s)	644
PfoI	TCCNGGA	1 cut(s)	1044
PkrI	GCNGC	7 cut(s)	6, 497, 559, 562, 655, 946, 1347
PscI	ACATGT	2 cut(s)	1226, 1416
Psp6I	CCWGG	5 cut(s)	46, 194, 675, 1044, 1363
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	5 cut(s)	46, 194, 675, 1044, 1363
PspN4I	GGNNCC	1 cut(s)	840
PspPI	GGNCC	2 cut(s)	233, 679
PsuI	RGATCY	1 cut(s)	329
PsyI	GACNNNGTC	1 cut(s)	644
RsaI	GTAC	3 cut(s)	470, 476, 1294
RsaNI	GTAC	3 cut(s)	469, 475, 1293
RseI	CAYNNNNRTG	4 cut(s)	74, 1231, 1386, 1392
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	1170
SatI	GCNGC	7 cut(s)	5, 496, 558, 561, 654, 945, 1346
Sau3AI	GATC	6 cut(s)	329, 423, 878, 1072, 1258, 1402
Sau96I	GGNCC	2 cut(s)	233, 679
ScaI	AGTACT	1 cut(s)	470
ScrFI	CCNGG	5 cut(s)	48, 196, 677, 1046, 1365
SduI	GDGCHC	1 cut(s)	203
SexAI	ACCWGGT	1 cut(s)	194
SfaNI	GCATC	3 cut(s)	99, 497, 778
SinI	GGWCC	2 cut(s)	233, 679
SmiMI	CAYNNNNRTG	4 cut(s)	74, 1231, 1386, 1392
SmlI	CTYRAG	3 cut(s)	25, 434, 526
SmoI	CTYRAG	3 cut(s)	25, 434, 526
Sse9I	AATT	6 cut(s)	65, 317, 587, 610, 976, 1148
SsiI	CCGC	3 cut(s)	561, 654, 1121
SspMI	CTAG	6 cut(s)	230, 350, 521, 1023, 1262, 1349
StyD4I	CCNGG	5 cut(s)	46, 194, 675, 1044, 1363
StyI	CCWWGG	2 cut(s)	236, 1381
TaaI	ACNGT	4 cut(s)	40, 743, 885, 1086
TaiI	ACGT	1 cut(s)	1059
TaqI	TCGA	6 cut(s)	89, 606, 1160, 1205, 1215, 1257
TasI	AATT	6 cut(s)	65, 317, 587, 610, 976, 1148
TatI	WGTACW	2 cut(s)	468, 474
TauI	GCSGC	2 cut(s)	563, 656
TfiI	GAWTC	2 cut(s)	260, 988
Tru1I	TTAA	1 cut(s)	1170
Tru9I	TTAA	1 cut(s)	1170
TscAI	CASTG	4 cut(s)	177, 521, 849, 1089
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	5 cut(s)	4, 495, 557, 944, 1345
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	7 cut(s)	58, 130, 330, 753, 1001, 1115, 1262
TspGWI	ACGGA	2 cut(s)	740, 1131
TspRI	CASTG	4 cut(s)	177, 521, 849, 1089
Tth111I	GACNNNGTC	1 cut(s)	644
VpaK11BI	GGWCC	2 cut(s)	233, 679
XapI	RAATTY	3 cut(s)	65, 587, 1148
XbaI	TCTAGA	1 cut(s)	1261
XceI	RCATGY	5 cut(s)	35, 485, 1134, 1230, 1420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	753
XmnI	GAANNNNTTC	2 cut(s)	1211, 1253
XspI	CTAG	6 cut(s)	230, 350, 521, 1023, 1262, 1349
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.