Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013111

Physical Location & Seq

Genomic Coordinates Forward (+)

15152889 .. 15156732

Gene Structure 3844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0163700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2808 bp

ATGCGTTTAGAGATGGAATATGATTGTGACCGTGCGTGGTATGATAGAGAAGAAGGTAGCACAGCGGTTGATACCACTGATAGTTCATCTTTGTTTTATGGGGATGATGTTTTTTGTCGAAAGAAGGAAGCGGAGTTGGCGAAGAGATTGGTTCGGAGAGATGGAACTAAGATGAGCCTTGCTCAGAGCAAAAGGTTGTCTCAGCGCAGTGCGGATAATGCTCAGTGGGAGGATCGTCAGCTTCTGCGATCTGGTGCTGTTAGAGGTACTGAGGTGCAGAGTGAGATTGATGATGAAGATGAGAACAAAGTTATGCTTCTTGTTCATGATACAAGGCCTCCTTTCCTAGATGGGAGAGTTGTTTTTACCAAGCAAGCGGAGCCGGTTATGCCAGTAAAGGATCCCACGTCTGATATGGCCATAATTTCACGCAAAGGGTCTGCTCTAGTTAGGGAAATCCATCAAAAGCGAAGTTCGAATAAATCACGTCAACGTTTTTGGGAGCTTGCAGGTTCCAAACTTGGTGATATTCTTGGTGTTGAGAAAACAGCAGAGCATATTGATGCAGATACTGCTGTAGTAGGTAAAGACGGTGAAGTTGATTTCAAAGAAGATGCAAAGTTTGCTCAGCATATGAAGAATGGGGAGGCTGTGAGTGAATTCACAAAGTCAAAAACCATTTCTGAACAACGCCAGTATCTGCCTATATATTCTGTGCGGGATGAGTTACTGCAGAAAATTCGAGAAAATCAGGTTATTATAGTTGTTGGAGAAACTGGTTCTGGAAAGACAACTCAACTGACACAATATCTGCATGAAGATGGTTACACTGTGAACGGTATAGTCGGTTGCACCCAGCCAAGGCGTGTGGCAGCCATGAGTGTTGCTAAAAGAGTTAGTGAAGAGATGGAGACTGAGCTTGGTGAGAAAGTTGGCTATGCTATTCGTTTTGAGGATGTGACGGGGCCAAAAACTGTAATAAAGTACATGACCGATGGAGTACTTATGCGTGAAACACTTAGAGATTCTGACCTTGACAAGTACCGCGTAGTTGTAATGGATGAAGCCCATGAGAGGTCACTATATACAGATGTGCTGTTTGGGATTTTGAAAAAAGTCGTTGCCCAGCGTCGTGATTTTAAGCTCATTGTGACATCTGCTACTCTTAATGCTCAGAAATTTGCAGATTTCTTTGGAGGTGCACCTATTTTTCCCATTCCTGGAAGAACATTTCCTGTACATAAGAAGTACTTGGATACCCCATGTGAAGATTATGTTGAAGCTGCAGTGACACAGGCCATGAAAATTCACATTACCAGCCCTCCAGGTGATATCCTCATCTTCATGACCGGCCAAGAAGAGATTGAAGCAGCCTGTTACTCTCTTGCAGAGCGAATGGAACAACTTATCTCCTCCTCAAAGAAAGAGATGTCAAAACTCTTGATACTCCCTATGTATTCACAGCTGCCAGCTGACTTGCAAGCAAAGATATTCCAAAGGTCTAAAGATGGGACTCGTAAATGCATTATAGCAACAAATATTGCTGAGACATCTTTGACCGTAGATGGTATATTTTATGTCATTGACACTGGCTATGGTAAAATGAAAGTATACAACCCTAGGATGGGTATGGATGCTCTTCAAGTATTTCCTAGTAGTCGTGCTGCTGCTGACCAACGTGCTGGGCGTGCTGGTAGAACTGGGCCTGGAACATGTTATCGGTTGTACACAGAGAGTGCCTACCTAAATGAAATGCTGGCCAGTCCTGTACCAGAGATCCAGAGGACGAACCTTGGCTACGTGGTCTTGTTGCTCAAGTCTCTGAAAGTTGATAACTTGCTTGATTTTGATTTCATGGACCCACCTCCCCAGGAAAATATTCTCAATTCTATGTACCAGCTGTGGGTCTTGGGTGCTCTCGACAATGTGGGAGGTTTGACTGCCTTAGGCTGGAAAATGGTAGAGTTCCCATTGGACCCTCCACTTGCGAAGATGTTGTTGATGGGTGAAGAGTTAGGATGCGTAGATGAAATTTTGACAATTGTATCCATGCTTTCAGTGCCATCAGTATTCTTTAGGCCCAAAGATAGGGCAGAGGAGAGTGATGCTGCTCGGGAAAAATTTTCAGTCCCAGAGTCCGATCACCTGACATTCTATAATGTTTATCAACAGTGGAAACAACATCAGTATCGGGGGGACTGGTGCAGTGACCATTTTTTGCATGTTAAGGGGTTACAAAAGGCTAGAGAGGTTAGGTCCCAGCTGCTAGAGATTCTGAAGACATTGAAAATTCCACTGACATCTTGTTGGCCTGATACTGACGTTGTGAGAAAAGCTATTTGCTCTGCATACTTTCAAAATGCTGCAAAGTTTAAGGGTGTGGGGGAGTATGTTAATTGCCGGACTGGGATGCCATGCCATTTACACCCGAGCAGTGCTCTTTATGGTATGGGCTGCACCCCTGAGTATGTGGTTTATCATGAACAGATTCTGACAACAAAGGAGTACATGCAGTGTGTAACAGCAGTGGAGCCGCAGTGGTTGGCTGATTGGGGACCCATGTTCTTTTCTGTAAAGGAGTCGGATACATCAGTGTTGCAGAATAAGAAGAGACAGCAGGAAGAAAAAACAGCTATGGAGGAGGAAATGGAGAAACTGAGAAAGGCTCAAGCACGGGCAGAGGCAGAAAGCAAGCAGAGGGAGAGGGAAAAGAGGTCTAAACAGCAGCAGCAGCAGCAGCAAGTCTCATTGGCGGGTTTGCACCAGGGCTCTTCTGCATATCTGAGGCCCAAGAAACTCGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

935

Amino Acids

105.87

Weight (kDa)

6.24

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	241 - 393	6.6e-09	DEAD/DEAH box helicase
AAA_22	PF13401	249 - 382	3.1e-06	AAA domain
Helicase_C	PF00271	438 - 568	2.9e-11	Helicase conserved C-terminal domain
WHD_HA2	PF04408	633 - 658	5.5e-07	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	659 - 718	1.7e-15	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	776 - 852	4.5e-18	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54690
fragaria_vesca	FvH4_3g21730
malus_domestica	MD03G1212400.v1.1 MD11G1227600.v1.1
prunus_persica	Prupe.4G201700_v2.0.a1 Prupe.4G201700_v2.0.a1
pyrus_communis	pycom03g16110 pycom11g20030
rosa_chinensis	RchiOBHm_Chr5g0037221
rosa_laevigata	RLG00000033766
rosa_multiflora	Rmu_sc0006633.1_g000005 Rmu_sc0022939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043750
rosa_rugosa	Rorug05G0163700
rosa_samantha	Rh5AG253400 Rh5CG288000 Rh5DG263800
rosa_wichuraiana	Rw5G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	1611
AccII	CGCG	1 cut(s)	1047
AciI	CCGC	8 cut(s)	65, 131, 212, 377, 718, 1045, 2534, 2753
AclI	AACGTT	1 cut(s)	493
AclWI	GGATC	4 cut(s)	240, 395, 408, 1771
AcoI	YGGCCR	3 cut(s)	417, 1351, 1758
AcsI	RAATTY	7 cut(s)	659, 738, 1178, 1305, 2031, 2120, 2289
AcuI	CTGAAG	1 cut(s)	2297
AfiI	CCNNNNNNNGG	8 cut(s)	861, 1074, 1220, 1624, 1625, 1903, 1950, 2088
AflIII	ACRYGT	1 cut(s)	1712
AgsI	TTSAA	7 cut(s)	607, 1111, 1280, 1367, 1643, 2287, 2357
AjiI	CACGTC	2 cut(s)	408, 488
AjnI	CCWGG	5 cut(s)	1219, 1324, 1705, 1869, 2763
Alw21I	GWGCWC	3 cut(s)	1204, 1918, 2440
Alw26I	GTCTC	6 cut(s)	204, 905, 1541, 1824, 2605, 2749
Alw44I	GTGCAC	1 cut(s)	1200
AlwI	GGATC	4 cut(s)	240, 395, 408, 1771
AlwNI	CAGNNNCTG	4 cut(s)	244, 572, 700, 2491
Ama87I	CYCGRG	2 cut(s)	2112, 2428
ApaLI	GTGCAC	1 cut(s)	1200
ApoI	RAATTY	7 cut(s)	659, 738, 1178, 1305, 2031, 2120, 2289
Asp700I	GAANNNNTTC	2 cut(s)	1878, 2487
AspA2I	CCTAGG	1 cut(s)	1619
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	8 cut(s)	965, 1703, 1858, 1975, 2079, 2256, 2555, 2787
AsuHPI	GGTGA	6 cut(s)	536, 605, 935, 1340, 2018, 2135
AsuII	TTCGAA	1 cut(s)	476
AvaI	CYCGRG	2 cut(s)	2112, 2428
AvaII	GGWCC	4 cut(s)	1858, 1975, 2256, 2555
AvrII	CCTAGG	1 cut(s)	1619
AxyI	CCTNAGG	1 cut(s)	1945
BaeGI	GKGCMC	1 cut(s)	1204
BalI	TGGCCA	2 cut(s)	419, 1760
BamHI	GGATCC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	2771
BbsI	GAAGAC	1 cut(s)	2285
Bbv12I	GWGCWC	3 cut(s)	1204, 1918, 2440
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	5 cut(s)	1221, 1326, 1707, 1871, 2765
BciVI	GTATCC	3 cut(s)	1249, 2056, 2578
BcoDI	GTCTC	6 cut(s)	204, 905, 1541, 1824, 2605, 2749
BfaI	CTAG	6 cut(s)	347, 446, 1620, 1653, 2244, 2267
BfmI	CTRYAG	3 cut(s)	576, 731, 1284
BfuAI	ACCTGC	1 cut(s)	500
BfuI	GTATCC	3 cut(s)	1249, 2056, 2578
BlnI	CCTAGG	1 cut(s)	1619
BlpI	GCTNAGC	1 cut(s)	627
BmcAI	AGTACT	2 cut(s)	1002, 1250
Bme1390I	CCNGG	5 cut(s)	1221, 1326, 1707, 1871, 2765
Bme18I	GGWCC	4 cut(s)	1858, 1975, 2256, 2555
BmeT110I	CYCGRG	2 cut(s)	2112, 2428
BmgBI	CACGTC	2 cut(s)	408, 488
BmgT120I	GGNCC	8 cut(s)	965, 1703, 1858, 1975, 2079, 2256, 2555, 2787
BmrFI	CCNGG	5 cut(s)	1221, 1326, 1707, 1871, 2765
BmrI	ACTGGG	2 cut(s)	1710, 2415
BmsI	GCATC	6 cut(s)	553, 604, 1624, 2009, 2095, 2400
BmuI	ACTGGG	2 cut(s)	1710, 2415
BpiI	GAAGAC	1 cut(s)	2285
BplI	GAGNNNNNCTC	6 cut(s)	166, 198, 2422, 2454, 2650, 2682
BpmI	CTGGAG	1 cut(s)	1308
Bpu1102I	GCTNAGC	1 cut(s)	627
Bpu14I	TTCGAA	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	1799, 2652
BsaAI	YACGTR	1 cut(s)	1801
BsaJI	CCNNGG	5 cut(s)	860, 1619, 1792, 1869, 2764
BsaXI	ACNNNNNCTCC	6 cut(s)	322, 352, 1306, 1336, 2522, 2552
Bsc4I	CCNNNNNNNGG	8 cut(s)	861, 1074, 1220, 1624, 1625, 1903, 1950, 2088
Bse118I	RCCGGY	2 cut(s)	382, 1349
Bse1I	ACTGG	8 cut(s)	392, 694, 781, 1594, 1705, 1761, 2204, 2410
Bse21I	CCTNAGG	1 cut(s)	1945
BseBI	CCWGG	5 cut(s)	1221, 1326, 1707, 1871, 2765
BseDI	CCNNGG	5 cut(s)	860, 1619, 1792, 1869, 2764
BseGI	GGATG	8 cut(s)	109, 727, 961, 1066, 1629, 1639, 2024, 2415
BseLI	CCNNNNNNNGG	8 cut(s)	861, 1074, 1220, 1624, 1625, 1903, 1950, 2088
BseNI	ACTGG	8 cut(s)	392, 694, 781, 1594, 1705, 1761, 2204, 2410
BseRI	GAGGAG	4 cut(s)	1402, 1405, 2111, 2654
BseSI	GKGCMC	1 cut(s)	1204
BseYI	CCCAGC	4 cut(s)	855, 1125, 1682, 2259
BsgI	GTGCAG	3 cut(s)	296, 2224, 2440
Bsh1236I	CGCG	1 cut(s)	1047
BsiHKAI	GWGCWC	3 cut(s)	1204, 1918, 2440
BsiHKCI	CYCGRG	2 cut(s)	2112, 2428
BsiSI	CCGG	3 cut(s)	383, 1350, 2401
BslFI	GGGAC	5 cut(s)	1525, 2114, 2210, 2242, 2568
BslI	CCNNNNNNNGG	8 cut(s)	861, 1074, 1220, 1624, 1625, 1903, 1950, 2088
BsmAI	GTCTC	6 cut(s)	204, 905, 1541, 1824, 2605, 2749
BsmFI	GGGAC	5 cut(s)	1525, 2114, 2210, 2242, 2568
BsoBI	CYCGRG	2 cut(s)	2112, 2428
Bsp119I	TTCGAA	1 cut(s)	476
Bsp1286I	GDGCHC	4 cut(s)	1204, 1918, 2440, 2771
Bsp1407I	TGTACA	2 cut(s)	1237, 1725
Bsp143I	GATC	5 cut(s)	232, 248, 400, 1776, 2140
Bsp1720I	GCTNAGC	1 cut(s)	627
BspACI	CCGC	8 cut(s)	65, 131, 212, 377, 718, 1045, 2534, 2753
BspFNI	CGCG	1 cut(s)	1047
BspHI	TCATGA	3 cut(s)	325, 1344, 2479
BspMAI	CTGCAG	2 cut(s)	735, 1288
BspMI	ACCTGC	1 cut(s)	500
BspPI	GGATC	4 cut(s)	240, 395, 408, 1771
BspQI	GCTCTTC	2 cut(s)	1644, 2776
BspT104I	TTCGAA	1 cut(s)	476
BsrFI	RCCGGY	2 cut(s)	382, 1349
BsrGI	TGTACA	2 cut(s)	1237, 1725
BsrI	ACTGG	8 cut(s)	392, 694, 781, 1594, 1705, 1761, 2204, 2410
BssAI	RCCGGY	2 cut(s)	382, 1349
BssECI	CCNNGG	5 cut(s)	860, 1619, 1792, 1869, 2764
BssMI	GATC	5 cut(s)	232, 248, 400, 1776, 2140
BssNAI	GTATAC	1 cut(s)	1612
BssT1I	CCWWGG	3 cut(s)	860, 1619, 1792
Bst1107I	GTATAC	1 cut(s)	1612
Bst2UI	CCWGG	5 cut(s)	1221, 1326, 1707, 1871, 2765
Bst4CI	ACNGT	7 cut(s)	32, 593, 832, 839, 976, 1561, 2172
Bst6I	CTCTTC	7 cut(s)	137, 897, 1353, 1644, 2004, 2603, 2776
BstAPI	GCANNNNNTGC	2 cut(s)	572, 623
BstAUI	TGTACA	2 cut(s)	1237, 1725
BstBAI	YACGTR	1 cut(s)	1801
BstBI	TTCGAA	1 cut(s)	476
BstC8I	GCNNGC	7 cut(s)	375, 507, 1470, 1482, 1689, 1758, 2693
BstF5I	GGATG	8 cut(s)	109, 727, 961, 1066, 1629, 1639, 2024, 2415
BstFNI	CGCG	1 cut(s)	1047
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	5 cut(s)	235, 251, 403, 1779, 2143
BstMAI	GTCTC	6 cut(s)	204, 905, 1541, 1824, 2605, 2749
BstMBI	GATC	5 cut(s)	232, 248, 400, 1776, 2140
BstNI	CCWGG	5 cut(s)	1221, 1326, 1707, 1871, 2765
BstNSI	RCATGY	3 cut(s)	1716, 2225, 2512
BstSCI	CCNGG	5 cut(s)	1219, 1324, 1705, 1869, 2763
BstSFI	CTRYAG	3 cut(s)	576, 731, 1284
BstSLI	GKGCMC	1 cut(s)	1204
BstUI	CGCG	1 cut(s)	1047
BstV2I	GAAGAC	1 cut(s)	2285
BstX2I	RGATCY	2 cut(s)	400, 1776
BstXI	CCANNNNNNTGG	1 cut(s)	1682
BstYI	RGATCY	2 cut(s)	400, 1776
BstZ17I	GTATAC	1 cut(s)	1612
Bsu36I	CCTNAGG	1 cut(s)	1945
BsuI	GTATCC	3 cut(s)	1249, 2056, 2578
BtrI	CACGTC	2 cut(s)	408, 488
BtsCI	GGATG	8 cut(s)	109, 727, 961, 1066, 1629, 1639, 2024, 2415
BtsI	GCAGTG	7 cut(s)	214, 1293, 2212, 2440, 2519, 2532, 2543
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	7 cut(s)	375, 507, 1470, 1482, 1689, 1758, 2693
CaiI	CAGNNNCTG	4 cut(s)	244, 572, 700, 2491
CciI	TCATGA	3 cut(s)	325, 1344, 2479
CfoI	GCGC	1 cut(s)	207
Cfr10I	RCCGGY	2 cut(s)	382, 1349
Cfr13I	GGNCC	8 cut(s)	965, 1703, 1858, 1975, 2079, 2256, 2555, 2787
CseI	GACGC	1 cut(s)	1118
CspCI	CAANNNNNGTGG	2 cut(s)	849, 884
DpnI	GATC	5 cut(s)	234, 250, 402, 1778, 2142
DpnII	GATC	5 cut(s)	232, 248, 400, 1776, 2140
EaeI	YGGCCR	3 cut(s)	417, 1351, 1758
Eam1104I	CTCTTC	7 cut(s)	137, 897, 1353, 1644, 2004, 2603, 2776
EarI	CTCTTC	7 cut(s)	137, 897, 1353, 1644, 2004, 2603, 2776
Eco130I	CCWWGG	3 cut(s)	860, 1619, 1792
Eco147I	AGGCCT	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	2771
Eco32I	GATATC	1 cut(s)	1333
Eco47I	GGWCC	4 cut(s)	1858, 1975, 2256, 2555
Eco57I	CTGAAG	1 cut(s)	2297
Eco81I	CCTNAGG	1 cut(s)	1945
Eco88I	CYCGRG	2 cut(s)	2112, 2428
EcoO109I	RGGNCCY	2 cut(s)	2256, 2555
EcoRI	GAATTC	1 cut(s)	659
EcoRII	CCWGG	5 cut(s)	1219, 1324, 1705, 1869, 2763
EcoRV	GATATC	1 cut(s)	1333
EcoT14I	CCWWGG	3 cut(s)	860, 1619, 1792
EcoT22I	ATGCAT	1 cut(s)	1526
EcoT38I	GRGCYC	1 cut(s)	2771
ErhI	CCWWGG	3 cut(s)	860, 1619, 1792
FalI	AAGNNNNNCTT	6 cut(s)	300, 332, 325, 357, 1235, 1267
FaqI	GGGAC	5 cut(s)	1525, 2114, 2210, 2242, 2568
FauI	CCCGC	2 cut(s)	711, 2746
FauNDI	CATATG	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	1611
FokI	GGATG	8 cut(s)	116, 734, 968, 1073, 1636, 1646, 2031, 2422
FriOI	GRGCYC	1 cut(s)	2771
FspBI	CTAG	6 cut(s)	347, 446, 1620, 1653, 2244, 2267
GlaI	GCGC	1 cut(s)	206
GsaI	CCCAGC	4 cut(s)	859, 1129, 1686, 2263
GsuI	CTGGAG	1 cut(s)	1308
HapII	CCGG	3 cut(s)	383, 1350, 2401
HgaI	GACGC	1 cut(s)	1118
HhaI	GCGC	1 cut(s)	207
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	491
HindII	GTYRAC	1 cut(s)	491
HinfI	GANTC	6 cut(s)	1025, 1513, 2135, 2272, 2488, 2579
HpaII	CCGG	3 cut(s)	383, 1350, 2401
HphI	GGTGA	6 cut(s)	536, 605, 935, 1340, 2018, 2135
Hpy166II	GTNNAC	5 cut(s)	491, 835, 1202, 1612, 1728
Hpy8I	GTNNAC	5 cut(s)	491, 835, 1202, 1612, 1728
Hpy99I	CGWCG	1 cut(s)	1134
HpyAV	CCTTC	2 cut(s)	47, 118
HpyCH4III	ACNGT	7 cut(s)	32, 593, 832, 839, 976, 1561, 2172
HpyCH4IV	ACGT	6 cut(s)	407, 487, 493, 1678, 1800, 2322
HpySE526I	ACGT	6 cut(s)	407, 487, 493, 1678, 1800, 2322
HspAI	GCGC	1 cut(s)	205
KflI	GGGWCCC	1 cut(s)	2555
Kzo9I	GATC	5 cut(s)	232, 248, 400, 1776, 2140
LguI	GCTCTTC	2 cut(s)	1644, 2776
LmnI	GCTCC	3 cut(s)	379, 502, 2530
LweI	GCATC	6 cut(s)	553, 604, 1624, 2009, 2095, 2400
MaeI	CTAG	6 cut(s)	347, 446, 1620, 1653, 2244, 2267
MaeII	ACGT	6 cut(s)	407, 487, 493, 1678, 1800, 2322
MalI	GATC	5 cut(s)	234, 250, 402, 1778, 2142
MboI	GATC	5 cut(s)	232, 248, 400, 1776, 2140
MfeI	CAATTG	1 cut(s)	2040
MflI	RGATCY	2 cut(s)	400, 1776
MhlI	GDGCHC	4 cut(s)	1204, 1918, 2440, 2771
MlsI	TGGCCA	2 cut(s)	419, 1760
MluNI	TGGCCA	2 cut(s)	419, 1760
MlyI	GAGTC	3 cut(s)	1507, 2144, 2588
MmeI	TCCRAC	2 cut(s)	748, 2562
Mox20I	TGGCCA	2 cut(s)	419, 1760
Mph1103I	ATGCAT	1 cut(s)	1526
MroXI	GAANNNNTTC	2 cut(s)	1878, 2487
MscI	TGGCCA	2 cut(s)	419, 1760
MseI	TTAA	5 cut(s)	1140, 1167, 2226, 2373, 2394
MslI	CAYNNNNRTG	3 cut(s)	561, 819, 1343
Msp20I	TGGCCA	2 cut(s)	419, 1760
MspA1I	CMGCKG	5 cut(s)	65, 1465, 1472, 1900, 2263
MspI	CCGG	3 cut(s)	383, 1350, 2401
MspR9I	CCNGG	5 cut(s)	1221, 1326, 1707, 1871, 2765
MunI	CAATTG	1 cut(s)	2040
MvaI	CCWGG	5 cut(s)	1221, 1326, 1707, 1871, 2765
MvnI	CGCG	1 cut(s)	1047
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	5 cut(s)	232, 248, 400, 1776, 2140
NmeAIII	GCCGAG	1 cut(s)	2778
NmuCI	GTSAC	6 cut(s)	26, 958, 1077, 1150, 1288, 2207
NsiI	ATGCAT	1 cut(s)	1526
NspI	RCATGY	3 cut(s)	1716, 2225, 2512
NspV	TTCGAA	1 cut(s)	476
PagI	TCATGA	3 cut(s)	325, 1344, 2479
PceI	AGGCCT	1 cut(s)	337
PciI	ACATGT	1 cut(s)	1712
PciSI	GCTCTTC	2 cut(s)	1644, 2776
PcsI	WCGNNNNNNNCGW	1 cut(s)	1684
PdmI	GAANNNNTTC	2 cut(s)	1878, 2487
PfeI	GAWTC	3 cut(s)	1025, 2272, 2488
PfoI	TCCNGGA	1 cut(s)	1219
PleI	GAGTC	3 cut(s)	1507, 2143, 2587
PpsI	GAGTC	3 cut(s)	1507, 2143, 2587
Ppu21I	YACGTR	1 cut(s)	1801
PpuMI	RGGWCCY	2 cut(s)	2256, 2555
PscI	ACATGT	1 cut(s)	1712
Psp1406I	AACGTT	1 cut(s)	493
Psp5II	RGGWCCY	2 cut(s)	2256, 2555
Psp6I	CCWGG	5 cut(s)	1219, 1324, 1705, 1869, 2763
PspFI	CCCAGC	4 cut(s)	855, 1125, 1682, 2259
PspGI	CCWGG	5 cut(s)	1219, 1324, 1705, 1869, 2763
PspPI	GGNCC	8 cut(s)	965, 1703, 1858, 1975, 2079, 2256, 2555, 2787
PspPPI	RGGWCCY	2 cut(s)	2256, 2555
PsrI	GAACNNNNNNTAC	2 cut(s)	1781, 1813
PstI	CTGCAG	2 cut(s)	735, 1288
PstNI	CAGNNNCTG	4 cut(s)	244, 572, 700, 2491
PsuI	RGATCY	2 cut(s)	400, 1776
PvuII	CAGCTG	4 cut(s)	1465, 1472, 1900, 2263
RseI	CAYNNNNRTG	3 cut(s)	561, 819, 1343
SapI	GCTCTTC	2 cut(s)	1644, 2776
SaqAI	TTAA	5 cut(s)	1140, 1167, 2226, 2373, 2394
Sau3AI	GATC	5 cut(s)	232, 248, 400, 1776, 2140
Sau96I	GGNCC	8 cut(s)	965, 1703, 1858, 1975, 2079, 2256, 2555, 2787
ScaI	AGTACT	2 cut(s)	1002, 1250
SchI	GAGTC	3 cut(s)	1507, 2144, 2588
ScrFI	CCNGG	5 cut(s)	1221, 1326, 1707, 1871, 2765
SduI	GDGCHC	4 cut(s)	1204, 1918, 2440, 2771
SfaNI	GCATC	6 cut(s)	553, 604, 1624, 2009, 2095, 2400
SfcI	CTRYAG	3 cut(s)	576, 731, 1284
SfuI	TTCGAA	1 cut(s)	476
SinI	GGWCC	4 cut(s)	1858, 1975, 2256, 2555
SmiMI	CAYNNNNRTG	3 cut(s)	561, 819, 1343
SmlI	CTYRAG	2 cut(s)	1814, 2667
SmoI	CTYRAG	2 cut(s)	1814, 2667
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	8 cut(s)	65, 131, 212, 377, 718, 1045, 2534, 2753
SspI	AATATT	2 cut(s)	1540, 1879
SspMI	CTAG	6 cut(s)	347, 446, 1620, 1653, 2244, 2267
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	5 cut(s)	1219, 1324, 1705, 1869, 2763
StyI	CCWWGG	3 cut(s)	860, 1619, 1792
TaaI	ACNGT	7 cut(s)	32, 593, 832, 839, 976, 1561, 2172
TaiI	ACGT	6 cut(s)	410, 490, 496, 1681, 1803, 2325
TaqI	TCGA	4 cut(s)	118, 476, 742, 1920
TaqII	GACCGA	1 cut(s)	1007
TatI	WGTACW	6 cut(s)	984, 1000, 1237, 1248, 1725, 2505
TauI	GCSGC	1 cut(s)	2536
TfiI	GAWTC	3 cut(s)	1025, 2272, 2488
Tru1I	TTAA	5 cut(s)	1140, 1167, 2226, 2373, 2394
Tru9I	TTAA	5 cut(s)	1140, 1167, 2226, 2373, 2394
TseFI	GTSAC	6 cut(s)	26, 958, 1077, 1150, 1288, 2207
Tsp45I	GTSAC	6 cut(s)	26, 958, 1077, 1150, 1288, 2207
VneI	GTGCAC	1 cut(s)	1200
VpaK11BI	GGWCC	4 cut(s)	1858, 1975, 2256, 2555
XapI	RAATTY	7 cut(s)	659, 738, 1178, 1305, 2031, 2120, 2289
XceI	RCATGY	3 cut(s)	1716, 2225, 2512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XmaJI	CCTAGG	1 cut(s)	1619
XmiI	GTMKAC	1 cut(s)	1611
XmnI	GAANNNNTTC	2 cut(s)	1878, 2487
XspI	CTAG	6 cut(s)	347, 446, 1620, 1653, 2244, 2267
ZrmI	AGTACT	2 cut(s)	1002, 1250
Zsp2I	ATGCAT	1 cut(s)	1526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.