Prupe.4G201700_v2.0.a1

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
12526904 .. 12531900
4997 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G201700.2

Sequence Viewer

Length: 1602 bp
ATGCAGCTTCACATATCACCCAGCTTGAGGCATGTGACTGTGTTTCCAGGGAAGGGAGTTAGAGAATTCATCAAAGTGAAAGTTGGGTCGAGGCGGCTTTCGTACCGGATGCTCTTCTACTCCATTCTCTTCTTCACATTTCTTCTCAGGTTTGTGTTTGTTATGACAGCAGTGGACACCATTGACGGAGAACGCAAGTGCTCCACAATAGGTTGCTTGGGGAAAAGACTAGGACCCAAGATTTTGGGAAGAAGGCTTGACTCTACTGTCCCAGAAGTGATATACCAAATATTAGAAGAACCCATCGGCAAAGATGAATTACAAGGAAGATCTGATATTCCTCAGTCCTTGGACGAATTTATGGCTGAGATAAAGGAAGGCAAATCAGACGCAAAGACCTTTGCTGTCAAGCTCAGAGATATGGTCACACTTCTTGAGCAGAGAACAAGAAATGCCAAAATCCAAGAGTACTTATACCGGCATGTAGCATCAAGCAGCATACCTAAACAGCTTCACTGCCTAGCCTTGAGGTTAGCCAATGAGCATGCCTCCAATGCAGCTGCTCGCCTCCAGCTCCCTTCTGCTGAACTCGTCCCCGCCCTTGTTGACAACTCCTACTTCCATTTTGTCCTCGCTTCAGATAATGTGCTCGCCGCCTCTGTCGTTGCCACTTCGCTTGTCCGTAACTCATTGCGCCCTCACAAAGTTGTCCTTCACATAATTACAGACAGAAAGACGTATTATCCCATGCAAGCATGGTTTTCTTTGCATCCCTTATCGCCTGCTATAATTGAGGTCAAGGCATTGCACCATTTTGATTGGTTTACAAAGGGGAAGGTGCCAGTGTTGGAAGCAATGGAGAAAGACCAAAAAGTGAGATCGCAGTTTAGAGGAGGGTCATCAGCCATTGTGGCAAACAATACAGATAAGCCTAATGTCATTGCAGCAAAGTTGCAGGCACTTAGTCCCAAGTACAACTCAGTGATGAACCATATCAGAATACATCTACCAGAGATGTTTCCCAGTCTCGATAAGGTAGTGTTCTTGGATGACGACATAGTAGTTCAAACGGATCTTTCACCATTATGGGATATTGATATGAATGGAAAGGTCAACGGAGCAGTTGAAACATGCAGGGGAGAAGATAACTTTGTGATGTCAAAGCGGCTCAAGAGTTATCTGAACTTCTCTCATCCTTTGATATCGAACAATTTCAATCCCAATTCATGTGCATGGGCTTATGGCATGAACATCTTTGATCTAGACGCTTGGCGGAAAACCAATATAAGCCTTACATACCACTACTGGCTTGAACAGAACTTGAAATCAGACCTGAGCCTGTGGCAGCTAGGAACATTACCCCCCGGGCTAATAGCATTCCACGGCCATGTCCATGTTATTGATCCGTTTTGGCACATGTTGGGACTGGGATATCAGGAAAACACAAGTTCTGCTGATGTTAAGAGTGCTGGTGTCATCCATTTCAATGGGAGAGCAAAGCCTTGGCTAGAGATTGCTTTTCCGAAACTTCGGCCATTTTGGGCAAAATATGTCGACTTCTCAGATAAATTCATCAAGAGCTGTCATATAAGGGCATCCTAG

Protein Analysis

534

Amino Acids

60.55

Weight (kDa)

9.28

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013111)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 838
AccI GTMKAC 1 cut(s) 1554
AciI CCGC 5 cut(s) 94, 597, 654, 1165, 1273
AclWI GGATC 2 cut(s) 1080, 1397
AcoI YGGCCR 2 cut(s) 1384, 1532
AcsI RAATTY 3 cut(s) 65, 356, 1568
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 3 cut(s) 104, 470, 974
AfiI CCNNNNNNNGG 2 cut(s) 27, 53
AflIII ACRYGT 1 cut(s) 1416
AgsI TTSAA 6 cut(s) 1067, 1127, 1216, 1313, 1324, 1486
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 8 cut(s) 7, 24, 412, 511, 560, 574, 1348, 1581
AluI AGCT 8 cut(s) 7, 24, 412, 511, 560, 574, 1348, 1581
Alw21I GWGCWC 2 cut(s) 203, 651
Alw26I GTCTC 1 cut(s) 1031
AlwI GGATC 2 cut(s) 1080, 1397
Ama87I CYCGRG 1 cut(s) 1364
AoxI GGCC 2 cut(s) 1384, 1532
ApeKI GCWGC 6 cut(s) 4, 495, 557, 560, 944, 1345
ApoI RAATTY 3 cut(s) 65, 356, 1568
Asp700I GAANNNNTTC 1 cut(s) 1211
AspLEI GCGC 1 cut(s) 696
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 2 cut(s) 1365, 1366
AsuHPI GGTGA 2 cut(s) 9, 1071
AvaI CYCGRG 1 cut(s) 1364
AvaII GGWCC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 838
Bbv12I GWGCWC 2 cut(s) 203, 651
BbvI GCAGC 6 cut(s) 16, 507, 547, 569, 956, 1357
BccI CCATC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 1399
BciT130I CCWGG 1 cut(s) 48
BcnI CCSGG 2 cut(s) 1365, 1366
BcoDI GTCTC 1 cut(s) 1031
BfaI CTAG 6 cut(s) 230, 521, 1262, 1349, 1508, 1600
BglI GCCNNNNNGGC 1 cut(s) 911
BglII AGATCT 1 cut(s) 329
BisI GCNGC 9 cut(s) 5, 95, 496, 558, 561, 654, 945, 1166, 1346
BlsI GCNGC 9 cut(s) 6, 96, 497, 559, 562, 655, 946, 1167, 1347
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 3 cut(s) 48, 1365, 1366
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 1364
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 235, 840
BmrFI CCNGG 3 cut(s) 48, 1365, 1366
BmrI ACTGGG 2 cut(s) 1017, 1436
BmsI GCATC 3 cut(s) 99, 497, 778
BmuI ACTGGG 2 cut(s) 1017, 1436
BplI GAGNNNNNCTC 2 cut(s) 533, 565
BpmI CTGGAG 1 cut(s) 554
Bpu10I CCTNAGC 1 cut(s) 1334
BpuEI CTTGAG 4 cut(s) 46, 455, 547, 1154
BpuMI CCSGG 2 cut(s) 1365, 1366
BsaJI CCNNGG 6 cut(s) 47, 348, 1363, 1364, 1381, 1502
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 53
Bse118I RCCGGY 1 cut(s) 477
Bse1I ACTGG 4 cut(s) 842, 1023, 1310, 1431
Bse3DI GCAATG 4 cut(s) 689, 803, 861, 939
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 6 cut(s) 47, 348, 1363, 1364, 1381, 1502
BseGI GGATG 6 cut(s) 114, 769, 1054, 1192, 1476, 1595
BseLI CCNNNNNNNGG 2 cut(s) 27, 53
BseMI GCAATG 4 cut(s) 689, 803, 861, 939
BseMII CTCAG 7 cut(s) 160, 356, 357, 427, 993, 1325, 1575
BseNI ACTGG 4 cut(s) 842, 1023, 1310, 1431
BseRI GAGGAG 1 cut(s) 906
BseXI GCAGC 6 cut(s) 16, 507, 547, 569, 956, 1357
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 2 cut(s) 1386, 1534
BshNI GGYRCC 1 cut(s) 838
BsiHKAI GWGCWC 2 cut(s) 203, 651
BsiHKCI CYCGRG 1 cut(s) 1364
BsiSI CCGG 3 cut(s) 106, 478, 1365
BslFI GGGAC 4 cut(s) 254, 578, 951, 1437
BslI CCNNNNNNNGG 2 cut(s) 27, 53
BsmAI GTCTC 1 cut(s) 1031
BsmFI GGGAC 4 cut(s) 254, 578, 951, 1437
BsmI GAATGC 1 cut(s) 1376
BsnI GGCC 2 cut(s) 1386, 1534
BsoBI CYCGRG 1 cut(s) 1364
Bsp1286I GDGCHC 2 cut(s) 203, 651
Bsp143I GATC 5 cut(s) 329, 878, 1072, 1258, 1402
BspACI CCGC 5 cut(s) 94, 597, 654, 1165, 1273
BspANI GGCC 2 cut(s) 1386, 1534
BspCNI CTCAG 7 cut(s) 159, 355, 358, 426, 992, 1326, 1574
BspLI GGNNCC 2 cut(s) 235, 840
BspPI GGATC 2 cut(s) 1080, 1397
BspQI GCTCTTC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 838
BsrDI GCAATG 4 cut(s) 689, 803, 861, 939
BsrFI RCCGGY 1 cut(s) 477
BsrI ACTGG 4 cut(s) 842, 1023, 1310, 1431
BssAI RCCGGY 1 cut(s) 477
BssECI CCNNGG 6 cut(s) 47, 348, 1363, 1364, 1381, 1502
BssMI GATC 5 cut(s) 329, 878, 1072, 1258, 1402
BssT1I CCWWGG 2 cut(s) 348, 1502
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 40, 268
Bst6I CTCTTC 2 cut(s) 119, 134
BstC8I GCNNGC 6 cut(s) 546, 565, 651, 753, 783, 957
BstDEI CTNAG 8 cut(s) 146, 342, 366, 413, 962, 979, 1334, 1561
BstDSI CCRYGG 1 cut(s) 1381
BstF5I GGATG 6 cut(s) 114, 769, 1054, 1192, 1476, 1595
BstHHI GCGC 1 cut(s) 696
BstKTI GATC 5 cut(s) 332, 881, 1075, 1261, 1405
BstMAI GTCTC 1 cut(s) 1031
BstMBI GATC 5 cut(s) 329, 878, 1072, 1258, 1402
BstMWI GCNNNNNNNGC 2 cut(s) 554, 911
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 5 cut(s) 35, 485, 548, 1134, 1420
BstSCI CCNGG 3 cut(s) 46, 1363, 1364
BstV1I GCAGC 6 cut(s) 16, 507, 547, 569, 956, 1357
BstX2I RGATCY 2 cut(s) 329, 1072
BstXI CCANNNNNNTGG 2 cut(s) 244, 1487
BstYI RGATCY 2 cut(s) 329, 1072
BsuRI GGCC 2 cut(s) 1386, 1534
BtgI CCRYGG 1 cut(s) 1381
BtsCI GGATG 6 cut(s) 114, 769, 1054, 1192, 1476, 1595
BtsI GCAGTG 2 cut(s) 177, 514
BtsIMutI CAGTG 4 cut(s) 177, 514, 849, 987
Cac8I GCNNGC 6 cut(s) 546, 565, 651, 753, 783, 957
CfoI GCGC 1 cut(s) 696
Cfr10I RCCGGY 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 233
Cfr9I CCCGGG 1 cut(s) 1364
CseI GACGC 2 cut(s) 398, 1274
Csp6I GTAC 3 cut(s) 103, 469, 973
CspCI CAANNNNNGTGG 2 cut(s) 658, 693
CviQI GTAC 3 cut(s) 103, 469, 973
DdeI CTNAG 8 cut(s) 146, 342, 366, 413, 962, 979, 1334, 1561
DpnI GATC 5 cut(s) 331, 880, 1074, 1260, 1404
DpnII GATC 5 cut(s) 329, 878, 1072, 1258, 1402
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 1384, 1532
Eam1104I CTCTTC 2 cut(s) 119, 134
EarI CTCTTC 2 cut(s) 119, 134
EciI GGCGGA 1 cut(s) 1288
Eco130I CCWWGG 2 cut(s) 348, 1502
Eco32I GATATC 2 cut(s) 1203, 1433
Eco47I GGWCC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 621
Eco88I CYCGRG 1 cut(s) 1364
EcoO109I RGGNCCY 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 46
EcoRV GATATC 2 cut(s) 1203, 1433
EcoT14I CCWWGG 2 cut(s) 348, 1502
ErhI CCWWGG 2 cut(s) 348, 1502
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 4 cut(s) 254, 578, 951, 1437
FauI CCCGC 1 cut(s) 604
FblI GTMKAC 1 cut(s) 1554
Fnu4HI GCNGC 9 cut(s) 5, 95, 496, 558, 561, 654, 945, 1166, 1346
FokI GGATG 6 cut(s) 121, 756, 1061, 1179, 1463, 1582
Fsp4HI GCNGC 9 cut(s) 5, 95, 496, 558, 561, 654, 945, 1166, 1346
FspBI CTAG 6 cut(s) 230, 521, 1262, 1349, 1508, 1600
GlaI GCGC 1 cut(s) 695
GluI GCNGC 9 cut(s) 5, 95, 496, 558, 561, 654, 945, 1166, 1346
GsaI CCCAGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 2 cut(s) 1386, 1534
HapII CCGG 3 cut(s) 106, 478, 1365
HgaI GACGC 2 cut(s) 398, 1274
HhaI GCGC 1 cut(s) 696
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HincII GTYRAC 3 cut(s) 607, 1114, 1555
HindII GTYRAC 3 cut(s) 607, 1114, 1555
HinfI GANTC 1 cut(s) 260
HpaII CCGG 3 cut(s) 106, 478, 1365
HphI GGTGA 2 cut(s) 9, 1071
Hpy166II GTNNAC 5 cut(s) 175, 607, 825, 1114, 1555
Hpy188I TCNGA 9 cut(s) 334, 388, 416, 640, 998, 1182, 1330, 1524, 1564
Hpy188III TCNNGA 6 cut(s) 434, 1028, 1171, 1262, 1436, 1576
Hpy8I GTNNAC 5 cut(s) 175, 607, 825, 1114, 1555
HpyAV CCTTC 6 cut(s) 46, 246, 371, 588, 722, 829
HpyCH4III ACNGT 2 cut(s) 40, 268
HpyCH4IV ACGT 1 cut(s) 737
HpyCH4V TGCA 9 cut(s) 4, 557, 751, 769, 808, 944, 955, 1134, 1232
HpyF10VI GCNNNNNNNGC 2 cut(s) 554, 911
HpyF3I CTNAG 8 cut(s) 146, 342, 366, 413, 962, 979, 1334, 1561
HpySE526I ACGT 1 cut(s) 737
HspAI GCGC 1 cut(s) 694
Kzo9I GATC 5 cut(s) 329, 878, 1072, 1258, 1402
LguI GCTCTTC 1 cut(s) 119
LmnI GCTCC 3 cut(s) 206, 579, 1118
Lsp1109I GCAGC 6 cut(s) 16, 507, 547, 569, 956, 1357
LweI GCATC 3 cut(s) 99, 497, 778
MaeI CTAG 6 cut(s) 230, 521, 1262, 1349, 1508, 1600
MaeII ACGT 1 cut(s) 737
MaeIII GTNAC 3 cut(s) 34, 424, 683
MalI GATC 5 cut(s) 331, 880, 1074, 1260, 1404
MboI GATC 5 cut(s) 329, 878, 1072, 1258, 1402
MboII GAAGA 8 cut(s) 106, 121, 124, 134, 261, 308, 339, 1154
MflI RGATCY 2 cut(s) 329, 1072
MhlI GDGCHC 2 cut(s) 203, 651
MluCI AATT 8 cut(s) 65, 317, 356, 720, 789, 1210, 1222, 1568
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 828
MroXI GAANNNNTTC 1 cut(s) 1211
MseI TTAA 1 cut(s) 1461
MslI CAYNNNNRTG 6 cut(s) 74, 1084, 1231, 1386, 1392, 1485
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 3 cut(s) 106, 478, 1365
MspR9I CCNGG 3 cut(s) 48, 1365, 1366
Mva1269I GAATGC 1 cut(s) 1376
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 554, 911
NciI CCSGG 2 cut(s) 1365, 1366
NdeII GATC 5 cut(s) 329, 878, 1072, 1258, 1402
NlaIV GGNNCC 2 cut(s) 235, 840
NmuCI GTSAC 2 cut(s) 34, 424
NspI RCATGY 5 cut(s) 35, 485, 548, 1134, 1420
PaeI GCATGC 1 cut(s) 548
PciI ACATGT 1 cut(s) 1416
PciSI GCTCTTC 1 cut(s) 119
PctI GAATGC 1 cut(s) 1376
PdmI GAANNNNTTC 1 cut(s) 1211
PkrI GCNGC 9 cut(s) 6, 96, 497, 559, 562, 655, 946, 1167, 1347
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PpuMI RGGWCCY 1 cut(s) 233
PscI ACATGT 1 cut(s) 1416
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 235, 840
PspPI GGNCC 1 cut(s) 233
PspPPI RGGWCCY 1 cut(s) 233
PsuI RGATCY 2 cut(s) 329, 1072
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 3 cut(s) 104, 470, 974
RsaNI GTAC 3 cut(s) 103, 469, 973
RseI CAYNNNNRTG 6 cut(s) 74, 1084, 1231, 1386, 1392, 1485
SalI GTCGAC 1 cut(s) 1553
SapI GCTCTTC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 1461
SatI GCNGC 9 cut(s) 5, 95, 496, 558, 561, 654, 945, 1166, 1346
Sau3AI GATC 5 cut(s) 329, 878, 1072, 1258, 1402
Sau96I GGNCC 1 cut(s) 233
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 3 cut(s) 48, 1365, 1366
SduI GDGCHC 2 cut(s) 203, 651
SfaNI GCATC 3 cut(s) 99, 497, 778
SinI GGWCC 1 cut(s) 233
SmaI CCCGGG 1 cut(s) 1366
SmiMI CAYNNNNRTG 6 cut(s) 74, 1084, 1231, 1386, 1392, 1485
SmlI CTYRAG 4 cut(s) 25, 434, 526, 1169
SmoI CTYRAG 4 cut(s) 25, 434, 526, 1169
SphI GCATGC 1 cut(s) 548
Sse9I AATT 8 cut(s) 65, 317, 356, 720, 789, 1210, 1222, 1568
SsiI CCGC 5 cut(s) 94, 597, 654, 1165, 1273
SspI AATATT 1 cut(s) 291
SspMI CTAG 6 cut(s) 230, 521, 1262, 1349, 1508, 1600
StyD4I CCNGG 3 cut(s) 46, 1363, 1364
StyI CCWWGG 2 cut(s) 348, 1502
TaaI ACNGT 2 cut(s) 40, 268
TaiI ACGT 1 cut(s) 740
TaqI TCGA 4 cut(s) 89, 1029, 1205, 1554
TasI AATT 8 cut(s) 65, 317, 356, 720, 789, 1210, 1222, 1568
TatI WGTACW 2 cut(s) 468, 972
TauI GCSGC 3 cut(s) 97, 656, 1168
Tru1I TTAA 1 cut(s) 1461
Tru9I TTAA 1 cut(s) 1461
TscAI CASTG 4 cut(s) 177, 521, 849, 987
TseFI GTSAC 2 cut(s) 34, 424
TseI GCWGC 6 cut(s) 4, 495, 557, 560, 944, 1345
Tsp45I GTSAC 2 cut(s) 34, 424
TspDTI ATGAA 7 cut(s) 58, 330, 1001, 1115, 1215, 1262, 1561
TspGWI ACGGA 5 cut(s) 201, 671, 1085, 1131, 1395
TspMI CCCGGG 1 cut(s) 1364
TspRI CASTG 4 cut(s) 177, 521, 849, 987
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 3 cut(s) 65, 356, 1568
XbaI TCTAGA 1 cut(s) 1261
XceI RCATGY 5 cut(s) 35, 485, 548, 1134, 1420
XmaI CCCGGG 1 cut(s) 1364
XmiI GTMKAC 1 cut(s) 1554
XmnI GAANNNNTTC 1 cut(s) 1211
XspI CTAG 6 cut(s) 230, 521, 1262, 1349, 1508, 1600
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.