MD03G1212400.v1.1

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
29168880 .. 29174489
5610 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1212400.v1.1.491

Sequence Viewer

Length: 1599 bp
ATGCAGCTTCACATATCTCCCAGCCTGAGGCATGTGACAGTGTTGCCGGGGAAAGGAGTGAGGGAATTCATCAAGGTGAAAGTTGGGTCGAGGCGGCTTTCATACCGGATGCTCTTCTACTCCATTCTGTTCTTCACTTTTCTTCTCAGGTTCGCGTTTGTGATGACTGCTGTGGACACCATTGATGGGGAAAGCAAGTGCTCCTCACTAGGTTGCTTGGGGAAAAGATTAGGGCCAAAAATATTGGGAAGAAGAGAATCAAGGGTCCCAGAAGTAATATACCAAATATTAGAAGAACCCATCGGCAAGCATGAATTACAAGGAAGATCTGATATTCCTCAGTCCTTAGACGAGTTTATGGTTGAAATAAAGGACGGAAAATTTGACGCAAGGACTTTCGCTGTCAAGCTCAGAGAAATGGTCACACTTCTTGAGCAAAGAACCCGAAATGCCAAAATCCAAGAGTACTTATACCGGCATGTAGCGTCAAGCAGCATACCTAAACAGCTTCACTGCCTAGCCTTGAGGTTAGCCAACGAGCATGCCTCCAACGCGGCTGCACGCCTCCAGCTCCCTTCTGCTGAACTCGTCCCTGCCCTCGTTGACAACTCCTTCTACCACTTTGTCCTCGCCTCAGACAATGTGCTTGCCGCCTCTGTTGTTGCCACATCCCTTGTTCGCAACTCATTGCGCCCTCACAAAGTTGTCCTCCACATTATCACAGACAGGAAGACATATTATCCGATGCAAGCGTGGTTTTCCCTGCATTCGTTATCACCTGCCATAATTGAGGTCAAGGCGCTGCACCATTTCGATTGGTTTACAAAGGGGAAGGTGCCGGTGTTGGAAGCAATGGAGAAAGACCAAAGGGTGAGGTCGCAATTTAGAGGCGGGTCCTCGGCCATTGTGGCAAATAATACCGAGAAGCCTAATGTTATTGCAGCAAAGTTGCAGGCACTTAGTCCCAAGTACAACTCTCTGATGAACCACATCAGAATACATCTACCAGAGCTGTTTCCTAGTCTTAATAAGATAGTGTTCTTGGACGACGACATAGTCGTTCAAACTGATCTTTCTCCGCTATGGGATATCGAAATGAATGGAAAGGTCAATGGAGCAGTTGAGACATGCAAGGGAGAAGATAACTTTGTGATGTCGAAGCGGTATAAGAGTTATCTGAACTTCTCTCATCCTTTGATATCTAAGAATTTCGACCCCAAGACATGTGCCTGGGCTTATGGCATGAACATCTTCGACCTAGATGCTTGGAGAAAAACCAACATAAGCCTTACATACCAACATTGGCTTGAAGAGAACTTGAAATCAGACCTGAGCCTTTGGCAGCTAGGAACGTTGCCCCCCGGCCTAATAGCATTCCACGGGCATGTCCATGTTATCGATCCATTCTGGCACATGTTGGGACTGGGATATCAGGAAAACACAAGTTCTGCCGATGTTAAGAGTGCCGGTGTCATCCATTTCAACGGGAGAGCAAAGCCCTGGCTAGATATTGCATTTCCAAAACTTCGGCCATTTTGGGCAAAATATGTCAATTTCTCAGATAAATTCATCAAGGGCTGTCGTATCACGGCAACCTAA

Protein Analysis

533

Amino Acids

60.51

Weight (kDa)

9.42

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 208 - 505 1.3e-72 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013111)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 787
AasI GACNNNNNNGTC 1 cut(s) 1055
Acc36I ACCTGC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 835
AccII CGCG 2 cut(s) 155, 554
AciI CCGC 6 cut(s) 94, 554, 651, 891, 1079, 1162
AclI AACGTT 1 cut(s) 1352
AclWI GGATC 1 cut(s) 1394
AcoI YGGCCR 2 cut(s) 900, 1529
AcsI RAATTY 4 cut(s) 65, 380, 1207, 1565
AfaI GTAC 2 cut(s) 467, 971
AfiI CCNNNNNNNGG 3 cut(s) 27, 53, 186
AflIII ACRYGT 2 cut(s) 1223, 1413
AgsI TTSAA 5 cut(s) 365, 1064, 1310, 1321, 1483
AjnI CCWGG 2 cut(s) 1229, 1499
AluBI AGCT 6 cut(s) 7, 409, 508, 571, 1012, 1345
AluI AGCT 6 cut(s) 7, 409, 508, 571, 1012, 1345
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 1118
AlwI GGATC 1 cut(s) 1394
AoxI GGCC 4 cut(s) 233, 900, 1363, 1529
ApeKI GCWGC 6 cut(s) 4, 492, 557, 802, 941, 1342
ApoI RAATTY 4 cut(s) 65, 380, 1207, 1565
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
Asp700I GAANNNNTTC 1 cut(s) 1250
AspLEI GCGC 2 cut(s) 693, 802
AspS9I GGNCC 3 cut(s) 233, 265, 894
AsuC2I CCSGG 2 cut(s) 48, 1362
AsuHPI GGTGA 3 cut(s) 88, 768, 883
AvaII GGWCC 2 cut(s) 265, 894
AxyI CCTNAGG 1 cut(s) 26
BanI GGYRCC 1 cut(s) 835
BbsI GAAGAC 1 cut(s) 737
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 6 cut(s) 16, 504, 544, 789, 953, 1354
BccI CCATC 2 cut(s) 179, 308
BcgI CGANNNNNNTGC 2 cut(s) 1244, 1278
BciT130I CCWGG 2 cut(s) 1231, 1501
BcnI CCSGG 2 cut(s) 48, 1362
BcoDI GTCTC 1 cut(s) 1118
BfaI CTAG 6 cut(s) 209, 518, 1020, 1259, 1346, 1505
BfoI RGCGCY 1 cut(s) 803
BfuAI ACCTGC 1 cut(s) 787
BglI GCCNNNNNGGC 1 cut(s) 908
BglII AGATCT 1 cut(s) 326
BisI GCNGC 9 cut(s) 5, 95, 493, 555, 558, 651, 803, 942, 1343
BlsI GCNGC 9 cut(s) 6, 96, 494, 556, 559, 652, 804, 943, 1344
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 4 cut(s) 48, 1231, 1362, 1501
Bme18I GGWCC 2 cut(s) 265, 894
BmgT120I GGNCC 3 cut(s) 233, 265, 894
BmiI GGNNCC 4 cut(s) 266, 267, 837, 895
BmrFI CCNGG 4 cut(s) 48, 1231, 1362, 1501
BmrI ACTGGG 1 cut(s) 1433
BmsI GCATC 3 cut(s) 99, 735, 1252
BmuI ACTGGG 1 cut(s) 1433
BpiI GAAGAC 1 cut(s) 737
BplI GAGNNNNNCTC 2 cut(s) 530, 562
BpmI CTGGAG 1 cut(s) 551
Bpu10I CCTNAGC 1 cut(s) 1331
BpuEI CTTGAG 2 cut(s) 452, 544
BpuMI CCSGG 2 cut(s) 48, 1362
Bsa29I ATCGAT 1 cut(s) 1398
BsaJI CCNNGG 6 cut(s) 47, 897, 1230, 1360, 1378, 1499
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 53, 186
Bse118I RCCGGY 3 cut(s) 474, 838, 1466
Bse1I ACTGG 1 cut(s) 1428
Bse21I CCTNAGG 1 cut(s) 26
Bse3DI GCAATG 2 cut(s) 686, 858
BseBI CCWGG 2 cut(s) 1231, 1501
BseCI ATCGAT 1 cut(s) 1398
BseDI CCNNGG 6 cut(s) 47, 897, 1230, 1360, 1378, 1499
BseGI GGATG 4 cut(s) 114, 668, 1189, 1473
BseLI CCNNNNNNNGG 3 cut(s) 27, 53, 186
BseMI GCAATG 2 cut(s) 686, 858
BseMII CTCAG 7 cut(s) 17, 160, 353, 424, 648, 1322, 1572
BseNI ACTGG 1 cut(s) 1428
BseRI GAGGAG 1 cut(s) 193
BseXI GCAGC 6 cut(s) 16, 504, 544, 789, 953, 1354
BseYI CCCAGC 1 cut(s) 20
BsgI GTGCAG 2 cut(s) 543, 788
Bsh1236I CGCG 2 cut(s) 155, 554
BshFI GGCC 4 cut(s) 235, 902, 1365, 1531
BshNI GGYRCC 1 cut(s) 835
BshVI ATCGAT 1 cut(s) 1398
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 6 cut(s) 47, 106, 475, 839, 1362, 1467
BslFI GGGAC 4 cut(s) 251, 575, 948, 1434
BslI CCNNNNNNNGG 3 cut(s) 27, 53, 186
BsmAI GTCTC 1 cut(s) 1118
BsmFI GGGAC 4 cut(s) 251, 575, 948, 1434
BsmI GAATGC 2 cut(s) 766, 1373
BsnI GGCC 4 cut(s) 235, 902, 1365, 1531
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 3 cut(s) 326, 1069, 1399
BspACI CCGC 6 cut(s) 94, 554, 651, 891, 1079, 1162
BspANI GGCC 4 cut(s) 235, 902, 1365, 1531
BspCNI CTCAG 7 cut(s) 18, 159, 352, 423, 647, 1323, 1571
BspDI ATCGAT 1 cut(s) 1398
BspFNI CGCG 2 cut(s) 155, 554
BspLI GGNNCC 4 cut(s) 266, 267, 837, 895
BspMI ACCTGC 1 cut(s) 787
BspPI GGATC 1 cut(s) 1394
BspQI GCTCTTC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 835
BsrDI GCAATG 2 cut(s) 686, 858
BsrFI RCCGGY 3 cut(s) 474, 838, 1466
BsrI ACTGG 1 cut(s) 1428
BssAI RCCGGY 3 cut(s) 474, 838, 1466
BssECI CCNNGG 6 cut(s) 47, 897, 1230, 1360, 1378, 1499
BssMI GATC 3 cut(s) 326, 1069, 1399
Bst2UI CCWGG 2 cut(s) 1231, 1501
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 3 cut(s) 119, 247, 1305
BstC8I GCNNGC 6 cut(s) 308, 543, 562, 648, 750, 954
BstDSI CCRYGG 1 cut(s) 1378
BstF5I GGATG 4 cut(s) 114, 668, 1189, 1473
BstFNI CGCG 2 cut(s) 155, 554
BstH2I RGCGCY 1 cut(s) 803
BstHHI GCGC 2 cut(s) 693, 802
BstKTI GATC 3 cut(s) 329, 1072, 1402
BstMAI GTCTC 1 cut(s) 1118
BstMBI GATC 3 cut(s) 326, 1069, 1399
BstMWI GCNNNNNNNGC 2 cut(s) 551, 908
BstNI CCWGG 2 cut(s) 1231, 1501
BstNSI RCATGY 7 cut(s) 35, 482, 545, 1131, 1227, 1388, 1417
BstSCI CCNGG 4 cut(s) 46, 1229, 1360, 1499
BstUI CGCG 2 cut(s) 155, 554
BstV1I GCAGC 6 cut(s) 16, 504, 544, 789, 953, 1354
BstV2I GAAGAC 1 cut(s) 737
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
Bsu15I ATCGAT 1 cut(s) 1398
Bsu36I CCTNAGG 1 cut(s) 26
BsuRI GGCC 4 cut(s) 235, 902, 1365, 1531
BsuTUI ATCGAT 1 cut(s) 1398
BtgI CCRYGG 1 cut(s) 1378
BtsCI GGATG 4 cut(s) 114, 668, 1189, 1473
BtsI GCAGTG 1 cut(s) 511
BtsIMutI CAGTG 2 cut(s) 45, 511
BveI ACCTGC 1 cut(s) 787
Cac8I GCNNGC 6 cut(s) 308, 543, 562, 648, 750, 954
CfoI GCGC 2 cut(s) 693, 802
Cfr10I RCCGGY 3 cut(s) 474, 838, 1466
Cfr13I GGNCC 3 cut(s) 233, 265, 894
ClaI ATCGAT 1 cut(s) 1398
CseI GACGC 2 cut(s) 395, 474
Csp6I GTAC 2 cut(s) 466, 970
CspCI CAANNNNNGTGG 2 cut(s) 655, 690
CviQI GTAC 2 cut(s) 466, 970
DpnI GATC 3 cut(s) 328, 1071, 1401
DpnII GATC 3 cut(s) 326, 1069, 1399
DrdI GACNNNNNNGTC 1 cut(s) 1055
DseDI GACNNNNNNGTC 1 cut(s) 1055
EaeI YGGCCR 2 cut(s) 900, 1529
Eam1104I CTCTTC 3 cut(s) 119, 247, 1305
EarI CTCTTC 3 cut(s) 119, 247, 1305
Eco32I GATATC 3 cut(s) 1090, 1200, 1430
Eco47I GGWCC 2 cut(s) 265, 894
Eco81I CCTNAGG 1 cut(s) 26
EcoO109I RGGNCCY 2 cut(s) 265, 894
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 1229, 1499
EcoRV GATATC 3 cut(s) 1090, 1200, 1430
FaqI GGGAC 4 cut(s) 251, 575, 948, 1434
FauI CCCGC 1 cut(s) 884
Fnu4HI GCNGC 9 cut(s) 5, 95, 493, 555, 558, 651, 803, 942, 1343
FokI GGATG 4 cut(s) 121, 655, 1176, 1460
Fsp4HI GCNGC 9 cut(s) 5, 95, 493, 555, 558, 651, 803, 942, 1343
FspBI CTAG 6 cut(s) 209, 518, 1020, 1259, 1346, 1505
GlaI GCGC 2 cut(s) 692, 801
GluI GCNGC 9 cut(s) 5, 95, 493, 555, 558, 651, 803, 942, 1343
GsaI CCCAGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 551
HaeII RGCGCY 1 cut(s) 803
HaeIII GGCC 4 cut(s) 235, 902, 1365, 1531
HapII CCGG 6 cut(s) 47, 106, 475, 839, 1362, 1467
HgaI GACGC 2 cut(s) 395, 474
HhaI GCGC 2 cut(s) 693, 802
Hin6I GCGC 2 cut(s) 691, 800
HinP1I GCGC 2 cut(s) 691, 800
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 1 cut(s) 257
HpaII CCGG 6 cut(s) 47, 106, 475, 839, 1362, 1467
HphI GGTGA 3 cut(s) 88, 768, 883
Hpy166II GTNNAC 3 cut(s) 175, 604, 822
Hpy188I TCNGA 9 cut(s) 331, 413, 637, 744, 981, 995, 1179, 1327, 1561
Hpy188III TCNNGA 2 cut(s) 431, 1433
Hpy8I GTNNAC 3 cut(s) 175, 604, 822
Hpy99I CGWCG 1 cut(s) 1052
HpyAV CCTTC 3 cut(s) 585, 622, 826
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 1352
HpyCH4V TGCA 9 cut(s) 4, 560, 748, 766, 805, 941, 952, 1131, 1514
HpyF10VI GCNNNNNNNGC 2 cut(s) 551, 908
HpySE526I ACGT 1 cut(s) 1352
HspAI GCGC 2 cut(s) 691, 800
KflI GGGWCCC 1 cut(s) 265
Kzo9I GATC 3 cut(s) 326, 1069, 1399
LguI GCTCTTC 1 cut(s) 119
LmnI GCTCC 3 cut(s) 206, 576, 1115
Lsp1109I GCAGC 6 cut(s) 16, 504, 544, 789, 953, 1354
LweI GCATC 3 cut(s) 99, 735, 1252
MaeI CTAG 6 cut(s) 209, 518, 1020, 1259, 1346, 1505
MaeII ACGT 1 cut(s) 1352
MaeIII GTNAC 2 cut(s) 34, 421
MalI GATC 3 cut(s) 328, 1071, 1401
MboI GATC 3 cut(s) 326, 1069, 1399
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 8 cut(s) 65, 314, 380, 786, 881, 1207, 1552, 1565
MmeI TCCRAC 2 cut(s) 573, 825
MroXI GAANNNNTTC 1 cut(s) 1250
MseI TTAA 2 cut(s) 1026, 1458
MslI CAYNNNNRTG 3 cut(s) 74, 1383, 1389
MspI CCGG 6 cut(s) 47, 106, 475, 839, 1362, 1467
MspR9I CCNGG 4 cut(s) 48, 1231, 1362, 1501
Mva1269I GAATGC 2 cut(s) 766, 1373
MvaI CCWGG 2 cut(s) 1231, 1501
MvnI CGCG 2 cut(s) 155, 554
MwoI GCNNNNNNNGC 2 cut(s) 551, 908
NciI CCSGG 2 cut(s) 48, 1362
NdeII GATC 3 cut(s) 326, 1069, 1399
NlaIV GGNNCC 4 cut(s) 266, 267, 837, 895
NmeAIII GCCGAG 1 cut(s) 878
NmuCI GTSAC 2 cut(s) 34, 421
NspI RCATGY 7 cut(s) 35, 482, 545, 1131, 1227, 1388, 1417
PaeI GCATGC 1 cut(s) 545
PaqCI CACCTGC 1 cut(s) 787
PciI ACATGT 2 cut(s) 1223, 1413
PciSI GCTCTTC 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 1056
PctI GAATGC 2 cut(s) 766, 1373
PdmI GAANNNNTTC 1 cut(s) 1250
PfeI GAWTC 1 cut(s) 257
PflFI GACNNNGTC 1 cut(s) 1055
PkrI GCNGC 9 cut(s) 6, 96, 494, 556, 559, 652, 804, 943, 1344
PpuMI RGGWCCY 2 cut(s) 265, 894
PscI ACATGT 2 cut(s) 1223, 1413
Psp1406I AACGTT 1 cut(s) 1352
Psp5II RGGWCCY 2 cut(s) 265, 894
Psp6I CCWGG 2 cut(s) 1229, 1499
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 2 cut(s) 1229, 1499
PspN4I GGNNCC 4 cut(s) 266, 267, 837, 895
PspPI GGNCC 3 cut(s) 233, 265, 894
PspPPI RGGWCCY 2 cut(s) 265, 894
PsuI RGATCY 1 cut(s) 326
PsyI GACNNNGTC 1 cut(s) 1055
RsaI GTAC 2 cut(s) 467, 971
RsaNI GTAC 2 cut(s) 466, 970
RseI CAYNNNNRTG 3 cut(s) 74, 1383, 1389
SapI GCTCTTC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 1026, 1458
SatI GCNGC 9 cut(s) 5, 95, 493, 555, 558, 651, 803, 942, 1343
Sau3AI GATC 3 cut(s) 326, 1069, 1399
Sau96I GGNCC 3 cut(s) 233, 265, 894
ScaI AGTACT 1 cut(s) 467
ScrFI CCNGG 4 cut(s) 48, 1231, 1362, 1501
SduI GDGCHC 1 cut(s) 203
SfaNI GCATC 3 cut(s) 99, 735, 1252
SinI GGWCC 2 cut(s) 265, 894
SmiMI CAYNNNNRTG 3 cut(s) 74, 1383, 1389
SmlI CTYRAG 2 cut(s) 431, 523
SmoI CTYRAG 2 cut(s) 431, 523
SphI GCATGC 1 cut(s) 545
Sse9I AATT 8 cut(s) 65, 314, 380, 786, 881, 1207, 1552, 1565
SsiI CCGC 6 cut(s) 94, 554, 651, 891, 1079, 1162
SspI AATATT 2 cut(s) 243, 288
SspMI CTAG 6 cut(s) 209, 518, 1020, 1259, 1346, 1505
StyD4I CCNGG 4 cut(s) 46, 1229, 1360, 1499
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 1355
TaqI TCGA 7 cut(s) 89, 813, 1092, 1157, 1212, 1254, 1398
TasI AATT 8 cut(s) 65, 314, 380, 786, 881, 1207, 1552, 1565
TatI WGTACW 2 cut(s) 465, 969
TauI GCSGC 3 cut(s) 97, 557, 653
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 1026, 1458
Tru9I TTAA 2 cut(s) 1026, 1458
TscAI CASTG 2 cut(s) 45, 518
TseFI GTSAC 2 cut(s) 34, 421
TseI GCWGC 6 cut(s) 4, 492, 557, 802, 941, 1342
Tsp45I GTSAC 2 cut(s) 34, 421
TspDTI ATGAA 7 cut(s) 58, 90, 327, 998, 1112, 1259, 1558
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 2 cut(s) 45, 518
Tth111I GACNNNGTC 1 cut(s) 1055
VpaK11BI GGWCC 2 cut(s) 265, 894
XapI RAATTY 4 cut(s) 65, 380, 1207, 1565
XceI RCATGY 7 cut(s) 35, 482, 545, 1131, 1227, 1388, 1417
XmnI GAANNNNTTC 1 cut(s) 1250
XspI CTAG 6 cut(s) 209, 518, 1020, 1259, 1346, 1505
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.