Rroxscaffold_1G00043750

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
62459310 .. 62463402
4093 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00043750.1

Sequence Viewer

Length: 1551 bp
ATGCAGCTTCATATATCACCCAGCTTGAGGCATGTGACAGTTTTCCCAGGGAAGGAAGTTAGAGAATTCATCAAGGTGAAAGTCGGGTCGAGACGGCTTTCGTATCGGATGCTCTTCTATTCCATTCTCTTCTTCACATTCATTCTCAGGTTTGTGTTTGTCATGACAGCAGTGGACACCATTGATGGAGAAACCAGGTGCTCTACAATAGGAATTGTCCCAGAAGTTGTTTACCAAGTTTTAGAGGAACCCATTGGCAAAGATGAATTACAAGGGAGATCTGATATTCCCCAGTCCCTAGATGAGTTTATGACTGAGATAAAGGACAGCAACATAGACGCAAGGACTTTTGCTGTCAAGCTCAGAGAGATGGTCACACTACTTGAGGAAAGAACCAGAAACGCGAAAATCCAAGAGTATTTGTACAGGCATGTAGCATCAAGCAGCATACCTAAACAGCTTCACTGCCTAGCCTTGAGGTTGGCCAACGAACACTCAACCAATGCAGCCGCTCGTCTCCAGCTCCCGTCTGCTGAATTTGTCCCTGCCCTTGTCGATAACTCCTTCTTCCACTTTGTCCTCGCCTCAGACAATGTCCTTGCCGCTTCTGTTGTTGCCACTTCCCTGGTCCAAAACTCATTGCGCCCTCACAAAGTTGTCCTCCACATAATCACAGACAGGAAGACATACTGTCCAATGCAAGCATGGTTTTCGTTGCATCCTTTATCCCCTGCGATTATTGAGGTCAAGGCATTACACCATTTTGATTGGTTTTCAAAGGGAAAGGTGCCAGTGTTGGAAGCAATGGAGAAAGACCAAAAAGTGAGATCACAGTTCAGAGGAGGGTCATCAGCCATTGTGGCAAACAATACTGATAAGCCTAATGTCATTGCAGCAAAGTTGCAGGCACTTAGTCCCAAGTATAATTCAATCATGAATCATATCAGAATACATCTACCGGAGATGTTTCCCAGTCTCAACAAGGTTGTGTTCCTGGATGATGACGTAGTAGTTCAGACTGATCTTTCCCCACTGTGGGATATTGATATGAATGGAAAGGTCAACGGAGCGGTTGAAACATGCAGGGGAAAAGATAAATTTGTTATGTCGAAGAAGTTTAAGAGCTACCTGAACTTCTCCCATCCTTTGATATCGAACAACTTCGACCCCAATACATGTGCATGGGCTTATGGCATGAACATATTCGATCTAGAGGCTTGGAGGAAAACTAACATAAGCCGTACATATCACTATTGGATTGAACAGAACTTGAAATCAGACCTGAGTTTGTGGCAGCTAGGAACATTACCCCCTGGCCTAATAGCATTCCATGGCCATGTCCATGTTATTGATCCTTTTTGGCACATGTTGGGATTTGGATATCAGGAAAACATAAGTTCTGCCGATGCCAAGAGTGCAGGTGTCATCCATTTTAATGGGAGGGCAAAGCCGTGGTTAGAGATTGCATTTCCCAATCTCCGGCCACTTTGGGCAAAGTATATAGACTTCTCCGATAAATTCATCAAGGGCTGTCATATTAGGGCATCTTAG

Protein Analysis

516

Amino Acids

58.8

Weight (kDa)

8.9

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 192 - 488 1.1e-72 Glycosyl transferase family 8
Glyco_transf_24 PF18404 313 - 367 3.6e-06 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013111)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1409
Acc36I ACCTGC 1 cut(s) 1409
AccB1I GGYRCC 1 cut(s) 787
AccBSI CCGCTC 2 cut(s) 512, 1070
AccII CGCG 1 cut(s) 404
AciI CCGC 3 cut(s) 510, 603, 1070
AclWI GGATC 1 cut(s) 1346
AcoI YGGCCR 3 cut(s) 483, 1333, 1481
AcsI RAATTY 4 cut(s) 65, 536, 1097, 1517
AfaI GTAC 2 cut(s) 425, 1243
AfiI CCNNNNNNNGG 5 cut(s) 27, 52, 1035, 1036, 1479
AflIII ACRYGT 2 cut(s) 1175, 1365
AgsI TTSAA 5 cut(s) 777, 930, 1076, 1262, 1273
AhdI GACNNNNNGTC 1 cut(s) 690
AjnI CCWGG 5 cut(s) 46, 194, 624, 993, 1312
AluBI AGCT 7 cut(s) 7, 24, 361, 460, 523, 1125, 1297
AluI AGCT 7 cut(s) 7, 24, 361, 460, 523, 1125, 1297
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 3 cut(s) 85, 521, 980
AlwI GGATC 1 cut(s) 1346
AoxI GGCC 4 cut(s) 483, 1315, 1333, 1481
ApeKI GCWGC 5 cut(s) 4, 444, 506, 893, 1294
ApoI RAATTY 4 cut(s) 65, 536, 1097, 1517
Asp700I GAANNNNTTC 2 cut(s) 1160, 1202
AspLEI GCGC 1 cut(s) 645
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 2 cut(s) 9, 88
AvaII GGWCC 1 cut(s) 628
BalI TGGCCA 2 cut(s) 485, 1335
BanI GGYRCC 1 cut(s) 787
BarI GAAGNNNNNNTAC 2 cut(s) 1490, 1522
BbsI GAAGAC 1 cut(s) 689
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 5 cut(s) 16, 456, 518, 905, 1306
BccI CCATC 3 cut(s) 179, 364, 1149
BceAI ACGGC 3 cut(s) 110, 1224, 1435
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BciT130I CCWGG 5 cut(s) 48, 196, 626, 995, 1314
BcoDI GTCTC 3 cut(s) 85, 521, 980
BfaI CTAG 4 cut(s) 299, 470, 1211, 1298
BfuAI ACCTGC 1 cut(s) 1409
BglI GCCNNNNNGGC 1 cut(s) 860
BglII AGATCT 1 cut(s) 278
BisI GCNGC 7 cut(s) 5, 445, 507, 510, 603, 894, 1295
BlsI GCNGC 7 cut(s) 6, 446, 508, 511, 604, 895, 1296
Bme1390I CCNGG 5 cut(s) 48, 196, 626, 995, 1314
Bme18I GGWCC 1 cut(s) 628
BmeRI GACNNNNNGTC 1 cut(s) 690
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 2 cut(s) 249, 789
BmrFI CCNGG 5 cut(s) 48, 196, 626, 995, 1314
BmrI ACTGGG 2 cut(s) 286, 966
BmsI GCATC 4 cut(s) 99, 446, 727, 1396
BmuI ACTGGG 2 cut(s) 286, 966
BpiI GAAGAC 1 cut(s) 689
BpmI CTGGAG 1 cut(s) 503
BpuEI CTTGAG 3 cut(s) 46, 404, 496
BsaJI CCNNGG 6 cut(s) 46, 47, 624, 1312, 1330, 1451
BsaWI WCCGGW 1 cut(s) 958
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 52, 1035, 1036, 1479
Bse1I ACTGG 3 cut(s) 292, 791, 972
Bse3DI GCAATG 3 cut(s) 638, 810, 888
BseBI CCWGG 5 cut(s) 48, 196, 626, 995, 1314
BseDI CCNNGG 6 cut(s) 46, 47, 624, 1312, 1330, 1451
BseGI GGATG 5 cut(s) 114, 718, 1003, 1141, 1425
BseLI CCNNNNNNNGG 5 cut(s) 27, 52, 1035, 1036, 1479
BseMI GCAATG 3 cut(s) 638, 810, 888
BseMII CTCAG 5 cut(s) 160, 306, 376, 600, 1274
BseNI ACTGG 3 cut(s) 292, 791, 972
BseRI GAGGAG 1 cut(s) 855
BseXI GCAGC 5 cut(s) 16, 456, 518, 905, 1306
BseYI CCCAGC 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 1437
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 4 cut(s) 485, 1317, 1335, 1483
BshNI GGYRCC 1 cut(s) 787
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 959, 1480
BslFI GGGAC 4 cut(s) 203, 280, 527, 900
BslI CCNNNNNNNGG 5 cut(s) 27, 52, 1035, 1036, 1479
BsmAI GTCTC 3 cut(s) 85, 521, 980
BsmBI CGTCTC 2 cut(s) 85, 521
BsmFI GGGAC 4 cut(s) 203, 280, 527, 900
BsmI GAATGC 1 cut(s) 1325
BsnI GGCC 4 cut(s) 485, 1317, 1335, 1483
Bsp1286I GDGCHC 1 cut(s) 203
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 5 cut(s) 278, 827, 1021, 1207, 1351
Bsp19I CCATGG 1 cut(s) 1330
BspACI CCGC 3 cut(s) 510, 603, 1070
BspANI GGCC 4 cut(s) 485, 1317, 1335, 1483
BspCNI CTCAG 5 cut(s) 159, 307, 375, 599, 1275
BspFNI CGCG 1 cut(s) 404
BspHI TCATGA 2 cut(s) 162, 933
BspLI GGNNCC 2 cut(s) 249, 789
BspMI ACCTGC 1 cut(s) 1409
BspPI GGATC 1 cut(s) 1346
BspQI GCTCTTC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 787
BsrBI CCGCTC 2 cut(s) 512, 1070
BsrDI GCAATG 3 cut(s) 638, 810, 888
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 3 cut(s) 292, 791, 972
BssECI CCNNGG 6 cut(s) 46, 47, 624, 1312, 1330, 1451
BssMI GATC 5 cut(s) 278, 827, 1021, 1207, 1351
BssT1I CCWWGG 1 cut(s) 1330
Bst2UI CCWGG 5 cut(s) 48, 196, 626, 995, 1314
Bst4CI ACNGT 4 cut(s) 40, 692, 834, 1035
Bst6I CTCTTC 2 cut(s) 119, 134
BstAUI TGTACA 1 cut(s) 423
BstC8I GCNNGC 2 cut(s) 702, 906
BstDEI CTNAG 7 cut(s) 146, 315, 362, 586, 911, 1283, 1548
BstDSI CCRYGG 2 cut(s) 1330, 1451
BstF5I GGATG 5 cut(s) 114, 718, 1003, 1141, 1425
BstFNI CGCG 1 cut(s) 404
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 5 cut(s) 281, 830, 1024, 1210, 1354
BstMAI GTCTC 3 cut(s) 85, 521, 980
BstMBI GATC 5 cut(s) 278, 827, 1021, 1207, 1351
BstMWI GCNNNNNNNGC 2 cut(s) 860, 1415
BstNI CCWGG 5 cut(s) 48, 196, 626, 995, 1314
BstNSI RCATGY 5 cut(s) 35, 434, 1083, 1179, 1369
BstSCI CCNGG 5 cut(s) 46, 194, 624, 993, 1312
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 5 cut(s) 16, 456, 518, 905, 1306
BstV2I GAAGAC 1 cut(s) 689
BstX2I RGATCY 1 cut(s) 278
BstXI CCANNNNNNTGG 2 cut(s) 625, 1436
BstYI RGATCY 1 cut(s) 278
BsuRI GGCC 4 cut(s) 485, 1317, 1335, 1483
BtgI CCRYGG 2 cut(s) 1330, 1451
BtsCI GGATG 5 cut(s) 114, 718, 1003, 1141, 1425
BtsI GCAGTG 2 cut(s) 177, 463
BtsIMutI CAGTG 4 cut(s) 177, 463, 798, 1031
BveI ACCTGC 1 cut(s) 1409
Cac8I GCNNGC 2 cut(s) 702, 906
CciI TCATGA 2 cut(s) 162, 933
CfoI GCGC 1 cut(s) 645
Cfr13I GGNCC 1 cut(s) 628
CseI GACGC 1 cut(s) 347
CsiI ACCWGGT 1 cut(s) 194
Csp6I GTAC 2 cut(s) 424, 1242
CviQI GTAC 2 cut(s) 424, 1242
DdeI CTNAG 7 cut(s) 146, 315, 362, 586, 911, 1283, 1548
DpnI GATC 5 cut(s) 280, 829, 1023, 1209, 1353
DpnII GATC 5 cut(s) 278, 827, 1021, 1207, 1351
DriI GACNNNNNGTC 1 cut(s) 690
EaeI YGGCCR 3 cut(s) 483, 1333, 1481
Eam1104I CTCTTC 2 cut(s) 119, 134
Eam1105I GACNNNNNGTC 1 cut(s) 690
EarI CTCTTC 2 cut(s) 119, 134
Eco130I CCWWGG 1 cut(s) 1330
Eco32I GATATC 2 cut(s) 1152, 1382
Eco47I GGWCC 1 cut(s) 628
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 5 cut(s) 46, 194, 624, 993, 1312
EcoRV GATATC 2 cut(s) 1152, 1382
EcoT14I CCWWGG 1 cut(s) 1330
ErhI CCWWGG 1 cut(s) 1330
Esp3I CGTCTC 2 cut(s) 85, 521
FaqI GGGAC 4 cut(s) 203, 280, 527, 900
Fnu4HI GCNGC 7 cut(s) 5, 445, 507, 510, 603, 894, 1295
FokI GGATG 5 cut(s) 121, 705, 1010, 1128, 1412
Fsp4HI GCNGC 7 cut(s) 5, 445, 507, 510, 603, 894, 1295
FspBI CTAG 4 cut(s) 299, 470, 1211, 1298
GlaI GCGC 1 cut(s) 644
GluI GCNGC 7 cut(s) 5, 445, 507, 510, 603, 894, 1295
GsaI CCCAGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 4 cut(s) 485, 1317, 1335, 1483
HapII CCGG 2 cut(s) 959, 1480
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 645
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HinfI GANTC 1 cut(s) 937
HpaII CCGG 2 cut(s) 959, 1480
HphI GGTGA 2 cut(s) 9, 88
Hpy166II GTNNAC 3 cut(s) 175, 232, 1063
Hpy188I TCNGA 9 cut(s) 108, 283, 365, 589, 839, 947, 1017, 1279, 1513
Hpy188III TCNNGA 5 cut(s) 90, 163, 934, 1211, 1385
Hpy8I GTNNAC 3 cut(s) 175, 232, 1063
HpyAV CCTTC 2 cut(s) 46, 574
HpyCH4III ACNGT 4 cut(s) 40, 692, 834, 1035
HpyCH4IV ACGT 1 cut(s) 1005
HpyF10VI GCNNNNNNNGC 2 cut(s) 860, 1415
HpyF3I CTNAG 7 cut(s) 146, 315, 362, 586, 911, 1283, 1548
HpySE526I ACGT 1 cut(s) 1005
HspAI GCGC 1 cut(s) 643
Kzo9I GATC 5 cut(s) 278, 827, 1021, 1207, 1351
LguI GCTCTTC 1 cut(s) 119
LmnI GCTCC 2 cut(s) 528, 1067
Lsp1109I GCAGC 5 cut(s) 16, 456, 518, 905, 1306
LweI GCATC 4 cut(s) 99, 446, 727, 1396
MabI ACCWGGT 1 cut(s) 194
MaeI CTAG 4 cut(s) 299, 470, 1211, 1298
MaeII ACGT 1 cut(s) 1005
MaeIII GTNAC 2 cut(s) 34, 373
MalI GATC 5 cut(s) 280, 829, 1023, 1209, 1353
MbiI CCGCTC 2 cut(s) 512, 1070
MboI GATC 5 cut(s) 278, 827, 1021, 1207, 1351
MboII GAAGA 6 cut(s) 106, 121, 124, 559, 694, 1123
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 203
MlsI TGGCCA 2 cut(s) 485, 1335
MluCI AATT 7 cut(s) 65, 213, 266, 536, 925, 1097, 1517
MluNI TGGCCA 2 cut(s) 485, 1335
MmeI TCCRAC 1 cut(s) 777
Mox20I TGGCCA 2 cut(s) 485, 1335
MroXI GAANNNNTTC 2 cut(s) 1160, 1202
MscI TGGCCA 2 cut(s) 485, 1335
MseI TTAA 2 cut(s) 1119, 1434
MslI CAYNNNNRTG 5 cut(s) 74, 1180, 1335, 1341, 1434
Msp20I TGGCCA 2 cut(s) 485, 1335
MspI CCGG 2 cut(s) 959, 1480
MspR9I CCNGG 5 cut(s) 48, 196, 626, 995, 1314
Mva1269I GAATGC 1 cut(s) 1325
MvaI CCWGG 5 cut(s) 48, 196, 626, 995, 1314
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 860, 1415
NcoI CCATGG 1 cut(s) 1330
NdeII GATC 5 cut(s) 278, 827, 1021, 1207, 1351
NlaIV GGNNCC 2 cut(s) 249, 789
NmuCI GTSAC 2 cut(s) 34, 373
NspI RCATGY 5 cut(s) 35, 434, 1083, 1179, 1369
PagI TCATGA 2 cut(s) 162, 933
PaqCI CACCTGC 1 cut(s) 1409
PasI CCCWGGG 1 cut(s) 47
PciI ACATGT 2 cut(s) 1175, 1365
PciSI GCTCTTC 1 cut(s) 119
PctI GAATGC 1 cut(s) 1325
PdmI GAANNNNTTC 2 cut(s) 1160, 1202
PfeI GAWTC 1 cut(s) 937
PflFI GACNNNGTC 1 cut(s) 593
PfoI TCCNGGA 1 cut(s) 993
PkrI GCNGC 7 cut(s) 6, 446, 508, 511, 604, 895, 1296
PscI ACATGT 2 cut(s) 1175, 1365
Psp6I CCWGG 5 cut(s) 46, 194, 624, 993, 1312
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 5 cut(s) 46, 194, 624, 993, 1312
PspN4I GGNNCC 2 cut(s) 249, 789
PspPI GGNCC 1 cut(s) 628
PsuI RGATCY 1 cut(s) 278
PsyI GACNNNGTC 1 cut(s) 593
RsaI GTAC 2 cut(s) 425, 1243
RsaNI GTAC 2 cut(s) 424, 1242
RseI CAYNNNNRTG 5 cut(s) 74, 1180, 1335, 1341, 1434
SapI GCTCTTC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 1119, 1434
SatI GCNGC 7 cut(s) 5, 445, 507, 510, 603, 894, 1295
Sau3AI GATC 5 cut(s) 278, 827, 1021, 1207, 1351
Sau96I GGNCC 1 cut(s) 628
ScrFI CCNGG 5 cut(s) 48, 196, 626, 995, 1314
SduI GDGCHC 1 cut(s) 203
SexAI ACCWGGT 1 cut(s) 194
SfaNI GCATC 4 cut(s) 99, 446, 727, 1396
SinI GGWCC 1 cut(s) 628
SmiMI CAYNNNNRTG 5 cut(s) 74, 1180, 1335, 1341, 1434
SmlI CTYRAG 3 cut(s) 25, 383, 475
SmoI CTYRAG 3 cut(s) 25, 383, 475
Sse9I AATT 7 cut(s) 65, 213, 266, 536, 925, 1097, 1517
SsiI CCGC 3 cut(s) 510, 603, 1070
SspMI CTAG 4 cut(s) 299, 470, 1211, 1298
StyD4I CCNGG 5 cut(s) 46, 194, 624, 993, 1312
StyI CCWWGG 1 cut(s) 1330
TaaI ACNGT 4 cut(s) 40, 692, 834, 1035
TaiI ACGT 1 cut(s) 1008
TaqI TCGA 6 cut(s) 89, 555, 1109, 1154, 1164, 1206
TasI AATT 7 cut(s) 65, 213, 266, 536, 925, 1097, 1517
TatI WGTACW 1 cut(s) 423
TauI GCSGC 2 cut(s) 512, 605
TfiI GAWTC 1 cut(s) 937
Tru1I TTAA 2 cut(s) 1119, 1434
Tru9I TTAA 2 cut(s) 1119, 1434
TscAI CASTG 4 cut(s) 177, 470, 798, 1038
TseFI GTSAC 2 cut(s) 34, 373
TseI GCWGC 5 cut(s) 4, 444, 506, 893, 1294
Tsp45I GTSAC 2 cut(s) 34, 373
TspDTI ATGAA 7 cut(s) 58, 130, 279, 950, 1064, 1211, 1510
TspGWI ACGGA 1 cut(s) 1080
TspRI CASTG 4 cut(s) 177, 470, 798, 1038
Tth111I GACNNNGTC 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 628
XapI RAATTY 4 cut(s) 65, 536, 1097, 1517
XbaI TCTAGA 1 cut(s) 1210
XceI RCATGY 5 cut(s) 35, 434, 1083, 1179, 1369
XcmI CCANNNNNNNNNTGG 1 cut(s) 702
XmnI GAANNNNTTC 2 cut(s) 1160, 1202
XspI CTAG 4 cut(s) 299, 470, 1211, 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.