Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013111

Physical Location & Seq

Genomic Coordinates Reverse (-)

31543721 .. 31549669

Gene Structure 5949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG288000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGATCTGGTTTAACAGTATTTATATGTCTGGTAAAAGTGAAAGAGTATTATTTCAGGTCACACTACTTGAGGAAAGAACCAGAAACGCGAAAATCCAAGAGTATTTGTACAGGCATGTAGCATCAAGCAGCATACCTAAACAGCTTCACTGCCTAGCCTTGAGGTTGGCCTACGAACACTCAACCAATGCAGCCGCTCGTCTCCAGCTCCCGTCTGCTGAATTTGTCCCTGCCCTTGTCGATAACTCCTTCTTCCACTTTGTCCTCGCCTCAGACAATGTCCTTGCCGCTTCTGTTGTTGCCACTTCCCTGGTCCAAAACTCATTGCGCCCTCACAAAGTTGTCCTCCACATAATCACAGACAGGAAGACATACTGTCCAATGCAAGCATGGTTTTCGTTGCATCCTTTATCCCCTGCGATTATTGAGGTCAAGGCATTACACCATTTTGATTGGTTTTCAAAGGGAAAGGTGCCAGTGTTGGAAGCAATGGAGAAAGACCAAAAAGTGAGATCACAGTTCAGAGGAGGGTCATCAGCCATTGTGGCAAACAATACTGATAAGCCTAATGTCATTGCAGCAAAGTTGCAGGCACTTAGTCCCAAGTATAATTCAATCATGAATCATATCAGAATACATCTACCAGAGATGTTTCCTAGTCTCAACAAGGTTGTGTTCCTGGATGATGACGTAGTAGTTCAGACTGATCTTTCCCCACTGTGGGATATTGATATGAATGGAAAGGTCAACGGAGCGGTTGAAACATGCAGGGGAAAAGATAAATTTGTTATGTCGAAGAAGTTTAAGAGCTACCTGAACTTCTCCCATCCTTTGATATCGAACAACTTCGACCCCAATACATGTGCATGGGCTTATGGCATGAACATATTCGATCTAGAGGCTTGGAGGAAAACTAACATAAGCCGTACATATCACTATTGGATTGAACAGAACTTGAAATCAGACCTGAGTTTGTGGCAGCTAGGAACATTACCCCCTGGCCTAATAGCATTCCATGGCCATGTCCATGTTATTGATCCTTTTTGGCACATGTTGGGATTTGGATATCAGGAAAACGTAAGTTCTGCCGATGCCAAGAGTGCAGGTGTCATCCATTTTAATGGGAGGGCAAAGCCGTGGTTAGAGATTGCATTTCCCAATCTCCGGCCACTTTGGGCAAAGTACATAGACTTCTCCGATAAATTCATCAAGGGCTGTCATATTAGGGCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

411

Amino Acids

46.81

Weight (kDa)

9.17

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	89 - 383	5.4e-73	Glycosyl transferase family 8
Glyco_transf_24	PF18404	207 - 262	2.4e-06	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54690
fragaria_vesca	FvH4_3g21730
malus_domestica	MD03G1212400.v1.1 MD11G1227600.v1.1
prunus_persica	Prupe.4G201700_v2.0.a1 Prupe.4G201700_v2.0.a1
pyrus_communis	pycom03g16110 pycom11g20030
rosa_chinensis	RchiOBHm_Chr5g0037221
rosa_laevigata	RLG00000033766
rosa_multiflora	Rmu_sc0006633.1_g000005 Rmu_sc0022939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043750
rosa_rugosa	Rorug05G0163700
rosa_samantha	Rh5AG253400 Rh5CG288000 Rh5DG263800
rosa_wichuraiana	Rw5G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1094
Acc36I	ACCTGC	1 cut(s)	1094
AccB1I	GGYRCC	1 cut(s)	472
AccBSI	CCGCTC	2 cut(s)	197, 755
AccII	CGCG	1 cut(s)	89
AciI	CCGC	3 cut(s)	195, 288, 755
AclWI	GGATC	1 cut(s)	1031
AcoI	YGGCCR	2 cut(s)	1018, 1166
AcsI	RAATTY	3 cut(s)	221, 782, 1202
AfaI	GTAC	3 cut(s)	110, 928, 1184
AfiI	CCNNNNNNNGG	3 cut(s)	720, 721, 1164
AflIII	ACRYGT	2 cut(s)	860, 1050
AgsI	TTSAA	5 cut(s)	462, 615, 761, 947, 958
AhdI	GACNNNNNGTC	1 cut(s)	375
AjnI	CCWGG	3 cut(s)	309, 678, 997
AluBI	AGCT	4 cut(s)	145, 208, 810, 982
AluI	AGCT	4 cut(s)	145, 208, 810, 982
Alw26I	GTCTC	2 cut(s)	206, 665
AlwI	GGATC	1 cut(s)	1031
AoxI	GGCC	4 cut(s)	168, 1000, 1018, 1166
ApeKI	GCWGC	4 cut(s)	129, 191, 578, 979
ApoI	RAATTY	3 cut(s)	221, 782, 1202
Asp700I	GAANNNNTTC	2 cut(s)	845, 887
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	1020
BanI	GGYRCC	1 cut(s)	472
BarI	GAAGNNNNNNTAC	2 cut(s)	1175, 1207
BbsI	GAAGAC	1 cut(s)	374
BbvI	GCAGC	4 cut(s)	141, 203, 590, 991
BccI	CCATC	1 cut(s)	834
BceAI	ACGGC	2 cut(s)	909, 1120
BcgI	CGANNNNNNTGC	2 cut(s)	378, 412
BciT130I	CCWGG	3 cut(s)	311, 680, 999
BcoDI	GTCTC	2 cut(s)	206, 665
BfaI	CTAG	4 cut(s)	155, 657, 896, 983
BfuAI	ACCTGC	1 cut(s)	1094
BglI	GCCNNNNNGGC	1 cut(s)	545
BisI	GCNGC	6 cut(s)	130, 192, 195, 288, 579, 980
BlsI	GCNGC	6 cut(s)	131, 193, 196, 289, 580, 981
Bme1390I	CCNGG	3 cut(s)	311, 680, 999
Bme18I	GGWCC	1 cut(s)	313
BmeRI	GACNNNNNGTC	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	3 cut(s)	311, 680, 999
BmsI	GCATC	3 cut(s)	131, 412, 1081
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	188
BpuEI	CTTGAG	2 cut(s)	89, 181
BsaJI	CCNNGG	4 cut(s)	309, 997, 1015, 1136
Bsc4I	CCNNNNNNNGG	3 cut(s)	720, 721, 1164
Bse1I	ACTGG	1 cut(s)	476
Bse3DI	GCAATG	3 cut(s)	323, 495, 573
BseBI	CCWGG	3 cut(s)	311, 680, 999
BseDI	CCNNGG	4 cut(s)	309, 997, 1015, 1136
BseGI	GGATG	4 cut(s)	403, 688, 826, 1110
BseLI	CCNNNNNNNGG	3 cut(s)	720, 721, 1164
BseMI	GCAATG	3 cut(s)	323, 495, 573
BseMII	CTCAG	2 cut(s)	285, 959
BseNI	ACTGG	1 cut(s)	476
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	4 cut(s)	141, 203, 590, 991
BsgI	GTGCAG	1 cut(s)	1122
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	4 cut(s)	170, 1002, 1020, 1168
BshNI	GGYRCC	1 cut(s)	472
BsiSI	CCGG	1 cut(s)	1165
BslFI	GGGAC	2 cut(s)	212, 585
BslI	CCNNNNNNNGG	3 cut(s)	720, 721, 1164
BsmAI	GTCTC	2 cut(s)	206, 665
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	212, 585
BsmI	GAATGC	1 cut(s)	1010
BsnI	GGCC	4 cut(s)	170, 1002, 1020, 1168
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	5 cut(s)	3, 512, 706, 892, 1036
Bsp19I	CCATGG	1 cut(s)	1015
BspACI	CCGC	3 cut(s)	195, 288, 755
BspANI	GGCC	4 cut(s)	170, 1002, 1020, 1168
BspCNI	CTCAG	2 cut(s)	284, 960
BspFNI	CGCG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	618
BspLI	GGNNCC	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	1094
BspPI	GGATC	1 cut(s)	1031
BspT107I	GGYRCC	1 cut(s)	472
BsrBI	CCGCTC	2 cut(s)	197, 755
BsrDI	GCAATG	3 cut(s)	323, 495, 573
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	4 cut(s)	309, 997, 1015, 1136
BssMI	GATC	5 cut(s)	3, 512, 706, 892, 1036
BssT1I	CCWWGG	1 cut(s)	1015
Bst2UI	CCWGG	3 cut(s)	311, 680, 999
Bst4CI	ACNGT	4 cut(s)	17, 377, 519, 720
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	387, 591
BstDEI	CTNAG	4 cut(s)	271, 596, 968, 1233
BstDSI	CCRYGG	2 cut(s)	1015, 1136
BstF5I	GGATG	4 cut(s)	403, 688, 826, 1110
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	5 cut(s)	6, 515, 709, 895, 1039
BstMAI	GTCTC	2 cut(s)	206, 665
BstMBI	GATC	5 cut(s)	3, 512, 706, 892, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 1100
BstNI	CCWGG	3 cut(s)	311, 680, 999
BstNSI	RCATGY	4 cut(s)	119, 768, 864, 1054
BstSCI	CCNGG	3 cut(s)	309, 678, 997
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	4 cut(s)	141, 203, 590, 991
BstV2I	GAAGAC	1 cut(s)	374
BstXI	CCANNNNNNTGG	2 cut(s)	310, 1121
BsuRI	GGCC	4 cut(s)	170, 1002, 1020, 1168
BtgI	CCRYGG	2 cut(s)	1015, 1136
BtsCI	GGATG	4 cut(s)	403, 688, 826, 1110
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	3 cut(s)	148, 483, 716
BveI	ACCTGC	1 cut(s)	1094
Cac8I	GCNNGC	2 cut(s)	387, 591
CciI	TCATGA	1 cut(s)	618
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	3 cut(s)	109, 927, 1183
CviQI	GTAC	3 cut(s)	109, 927, 1183
DdeI	CTNAG	4 cut(s)	271, 596, 968, 1233
DpnI	GATC	5 cut(s)	5, 514, 708, 894, 1038
DpnII	GATC	5 cut(s)	3, 512, 706, 892, 1036
DriI	GACNNNNNGTC	1 cut(s)	375
EaeI	YGGCCR	2 cut(s)	1018, 1166
Eam1105I	GACNNNNNGTC	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	1015
Eco32I	GATATC	2 cut(s)	837, 1067
Eco47I	GGWCC	1 cut(s)	313
EcoRII	CCWGG	3 cut(s)	309, 678, 997
EcoRV	GATATC	2 cut(s)	837, 1067
EcoT14I	CCWWGG	1 cut(s)	1015
ErhI	CCWWGG	1 cut(s)	1015
Esp3I	CGTCTC	1 cut(s)	206
FaqI	GGGAC	2 cut(s)	212, 585
Fnu4HI	GCNGC	6 cut(s)	130, 192, 195, 288, 579, 980
FokI	GGATG	4 cut(s)	390, 695, 813, 1097
Fsp4HI	GCNGC	6 cut(s)	130, 192, 195, 288, 579, 980
FspBI	CTAG	4 cut(s)	155, 657, 896, 983
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	6 cut(s)	130, 192, 195, 288, 579, 980
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	4 cut(s)	170, 1002, 1020, 1168
HapII	CCGG	1 cut(s)	1165
HhaI	GCGC	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HinfI	GANTC	1 cut(s)	622
HpaII	CCGG	1 cut(s)	1165
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	6 cut(s)	274, 524, 632, 702, 964, 1198
Hpy188III	TCNNGA	3 cut(s)	619, 896, 1070
Hpy8I	GTNNAC	1 cut(s)	748
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	4 cut(s)	17, 377, 519, 720
HpyCH4IV	ACGT	2 cut(s)	690, 1077
HpyCH4V	TGCA	9 cut(s)	191, 385, 403, 578, 589, 768, 866, 1103, 1151
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 1100
HpyF3I	CTNAG	4 cut(s)	271, 596, 968, 1233
HpySE526I	ACGT	2 cut(s)	690, 1077
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	5 cut(s)	3, 512, 706, 892, 1036
LmnI	GCTCC	2 cut(s)	213, 752
Lsp1109I	GCAGC	4 cut(s)	141, 203, 590, 991
LweI	GCATC	3 cut(s)	131, 412, 1081
MaeI	CTAG	4 cut(s)	155, 657, 896, 983
MaeII	ACGT	2 cut(s)	690, 1077
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	5 cut(s)	5, 514, 708, 894, 1038
MbiI	CCGCTC	2 cut(s)	197, 755
MboI	GATC	5 cut(s)	3, 512, 706, 892, 1036
MboII	GAAGA	3 cut(s)	244, 379, 808
MlsI	TGGCCA	1 cut(s)	1020
MluCI	AATT	4 cut(s)	221, 610, 782, 1202
MluNI	TGGCCA	1 cut(s)	1020
MmeI	TCCRAC	1 cut(s)	462
Mox20I	TGGCCA	1 cut(s)	1020
MroXI	GAANNNNTTC	2 cut(s)	845, 887
MscI	TGGCCA	1 cut(s)	1020
MseI	TTAA	3 cut(s)	12, 804, 1119
MslI	CAYNNNNRTG	4 cut(s)	865, 1020, 1026, 1119
Msp20I	TGGCCA	1 cut(s)	1020
MspI	CCGG	1 cut(s)	1165
MspR9I	CCNGG	3 cut(s)	311, 680, 999
Mva1269I	GAATGC	1 cut(s)	1010
MvaI	CCWGG	3 cut(s)	311, 680, 999
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	545, 1100
NcoI	CCATGG	1 cut(s)	1015
NdeII	GATC	5 cut(s)	3, 512, 706, 892, 1036
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	4 cut(s)	119, 768, 864, 1054
PagI	TCATGA	1 cut(s)	618
PaqCI	CACCTGC	1 cut(s)	1094
PciI	ACATGT	2 cut(s)	860, 1050
PctI	GAATGC	1 cut(s)	1010
PdmI	GAANNNNTTC	2 cut(s)	845, 887
PfeI	GAWTC	1 cut(s)	622
PflFI	GACNNNGTC	1 cut(s)	278
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	6 cut(s)	131, 193, 196, 289, 580, 981
PscI	ACATGT	2 cut(s)	860, 1050
Psp6I	CCWGG	3 cut(s)	309, 678, 997
PspGI	CCWGG	3 cut(s)	309, 678, 997
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	313
PsyI	GACNNNGTC	1 cut(s)	278
RsaI	GTAC	3 cut(s)	110, 928, 1184
RsaNI	GTAC	3 cut(s)	109, 927, 1183
RseI	CAYNNNNRTG	4 cut(s)	865, 1020, 1026, 1119
SaqAI	TTAA	3 cut(s)	12, 804, 1119
SatI	GCNGC	6 cut(s)	130, 192, 195, 288, 579, 980
Sau3AI	GATC	5 cut(s)	3, 512, 706, 892, 1036
Sau96I	GGNCC	1 cut(s)	313
ScrFI	CCNGG	3 cut(s)	311, 680, 999
SfaNI	GCATC	3 cut(s)	131, 412, 1081
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	4 cut(s)	865, 1020, 1026, 1119
SmlI	CTYRAG	2 cut(s)	68, 160
SmoI	CTYRAG	2 cut(s)	68, 160
Sse9I	AATT	4 cut(s)	221, 610, 782, 1202
SsiI	CCGC	3 cut(s)	195, 288, 755
SspMI	CTAG	4 cut(s)	155, 657, 896, 983
StyD4I	CCNGG	3 cut(s)	309, 678, 997
StyI	CCWWGG	1 cut(s)	1015
TaaI	ACNGT	4 cut(s)	17, 377, 519, 720
TaiI	ACGT	2 cut(s)	693, 1080
TaqI	TCGA	5 cut(s)	240, 794, 839, 849, 891
TasI	AATT	4 cut(s)	221, 610, 782, 1202
TatI	WGTACW	2 cut(s)	108, 1182
TauI	GCSGC	2 cut(s)	197, 290
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	3 cut(s)	12, 804, 1119
Tru9I	TTAA	3 cut(s)	12, 804, 1119
TscAI	CASTG	3 cut(s)	155, 483, 723
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	4 cut(s)	129, 191, 578, 979
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	4 cut(s)	635, 749, 896, 1195
TspGWI	ACGGA	1 cut(s)	765
TspRI	CASTG	3 cut(s)	155, 483, 723
Tth111I	GACNNNGTC	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	3 cut(s)	221, 782, 1202
XbaI	TCTAGA	1 cut(s)	895
XceI	RCATGY	4 cut(s)	119, 768, 864, 1054
XcmI	CCANNNNNNNNNTGG	1 cut(s)	387
XmnI	GAANNNNTTC	2 cut(s)	845, 887
XspI	CTAG	4 cut(s)	155, 657, 896, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.