Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0013111

Physical Location & Seq

Genomic Coordinates Forward (+)

17283947 .. 17285544

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGTCACACTTCTTGAGCAAAGAACCCGAAATGCCAAAATCCAAGAGTACTTATACCGGCATGTAGCGTCAAGCAGCATACCTAAACAGCTTCACTGCCTAGCCTTGAGGTTAGCCAACGAGCACGCCTCCAACGCGGCTGCTCGCCTCCAGCTCCCTTCTGCTGAACTTGTCCCTGCCCTCGTTGACAACTCCTACTACCACTTTGTCCTCGCCTCAGACAATGTGCTTGCCGCCTCTGTTGTTGCCACATCCCTTGTTCGCAACTCATTGCACCCTCACAAAGTTGTCCTCCACATTATCACAGACAGGAAGACATATTATCCAATGCAAGCGTGGTTTTCTCTGCATTCGTTATCACCTGCCATAATCGAGGTCAAGGCGCTGCACCATTTCGATTGGTTTACAAAGGGGAAGGTGCCGGTATTGGAAGCAATGGAGAAAGACCAAAGGGTGAGGTCGCAGTTTAGAGGCGGGTCCTCGGCCATTGTGGCAAATAATACCGAGAAGCCTAACGTTATTGCAGCAAAGTTGCAGGCACTTAGTCCCAAGTACAACTCTCTGATGAACCACATCAGAATACATCTACCAGAGCTGTTTCCTAGTCTTAATAAGATAGTGTTCTTGGACGACGACATAGTCGTTCAAACTGATCTTTCACCGCTATGGGATATCGAAATGAATGGAAAGGTCAATGGAGCAGTTGAGACATGCAAGGGAGAAGATAACTTTGTGATGTCGAAGCGGTTTAAGAGTTATCTGAACTTCTCTCATCCCTTGATATCTAAGAATTTCAACCCCAAGACATGTGCCTGGGCTTATGGCATGAACATCTTCGACCTAGATGCTTGGAGAAAAACCAACATAAGCCTCACGTACCACCATTGGCTTGAACAGAACTTGAAATCAGACCTGAGCCTTTGGCAGCTAGGAACGTTGCCCCCCGGCCTAATAGCATTCCACGGGCATGTCCATGTTATCGATCCATTCTGGCACATGTTGGGACTGGGATATCAGGAAAACACAAGTTCTGCCGATGTTAAGAGTGCCGGTGTCATCCATTTCAACGGGAGAGCAAAGCCCTGGCTAGATATTGCATTTCCAAAACTTCGGCCATTTTGGGCAAAATATGTCAATTTCTCAGATAAATTCATCAAGGGCTGTCGTATCACGGCAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

394

Amino Acids

44.6

Weight (kDa)

9.3

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54690
fragaria_vesca	FvH4_3g21730
malus_domestica	MD03G1212400.v1.1 MD11G1227600.v1.1
prunus_persica	Prupe.4G201700_v2.0.a1 Prupe.4G201700_v2.0.a1
pyrus_communis	pycom03g16110 pycom11g20030
rosa_chinensis	RchiOBHm_Chr5g0037221
rosa_laevigata	RLG00000033766
rosa_multiflora	Rmu_sc0006633.1_g000005 Rmu_sc0022939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043750
rosa_rugosa	Rorug05G0163700
rosa_samantha	Rh5AG253400 Rh5CG288000 Rh5DG263800
rosa_wichuraiana	Rw5G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	370
AasI	GACNNNNNNGTC	1 cut(s)	638
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	418
AccII	CGCG	1 cut(s)	137
AciI	CCGC	5 cut(s)	137, 234, 474, 662, 745
AclI	AACGTT	2 cut(s)	516, 935
AclWI	GGATC	1 cut(s)	977
AcoI	YGGCCR	2 cut(s)	483, 1112
AcsI	RAATTY	2 cut(s)	790, 1148
AfaI	GTAC	3 cut(s)	50, 554, 878
AflIII	ACRYGT	2 cut(s)	806, 996
AgsI	TTSAA	5 cut(s)	647, 796, 893, 904, 1066
AjnI	CCWGG	2 cut(s)	812, 1082
AluBI	AGCT	4 cut(s)	91, 154, 595, 928
AluI	AGCT	4 cut(s)	91, 154, 595, 928
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	1 cut(s)	977
AoxI	GGCC	3 cut(s)	483, 946, 1112
ApeKI	GCWGC	5 cut(s)	75, 140, 385, 524, 925
ApoI	RAATTY	2 cut(s)	790, 1148
Asp700I	GAANNNNTTC	1 cut(s)	833
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	477
AsuC2I	CCSGG	1 cut(s)	945
AsuHPI	GGTGA	3 cut(s)	351, 466, 651
AvaII	GGWCC	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	5 cut(s)	87, 127, 372, 536, 937
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	2 cut(s)	814, 1084
BcnI	CCSGG	1 cut(s)	945
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	5 cut(s)	101, 603, 842, 929, 1088
BfoI	RGCGCY	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	370
BglI	GCCNNNNNGGC	1 cut(s)	491
BisI	GCNGC	7 cut(s)	76, 138, 141, 234, 386, 525, 926
BlsI	GCNGC	7 cut(s)	77, 139, 142, 235, 387, 526, 927
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	3 cut(s)	814, 945, 1084
Bme18I	GGWCC	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	2 cut(s)	420, 478
BmrFI	CCNGG	3 cut(s)	814, 945, 1084
BmrI	ACTGGG	1 cut(s)	1016
BmsI	GCATC	1 cut(s)	835
BmuI	ACTGGG	1 cut(s)	1016
BpiI	GAAGAC	1 cut(s)	320
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	914
BpuEI	CTTGAG	2 cut(s)	35, 127
BpuMI	CCSGG	1 cut(s)	945
Bsa29I	ATCGAT	1 cut(s)	981
BsaAI	YACGTR	1 cut(s)	876
BsaJI	CCNNGG	5 cut(s)	480, 813, 943, 961, 1082
Bse118I	RCCGGY	3 cut(s)	57, 421, 1049
Bse1I	ACTGG	1 cut(s)	1011
Bse3DI	GCAATG	2 cut(s)	269, 441
BseBI	CCWGG	2 cut(s)	814, 1084
BseCI	ATCGAT	1 cut(s)	981
BseDI	CCNNGG	5 cut(s)	480, 813, 943, 961, 1082
BseGI	GGATG	3 cut(s)	251, 772, 1056
BseMI	GCAATG	2 cut(s)	269, 441
BseMII	CTCAG	3 cut(s)	231, 905, 1155
BseNI	ACTGG	1 cut(s)	1011
BseXI	GCAGC	5 cut(s)	87, 127, 372, 536, 937
BsgI	GTGCAG	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	485, 948, 1114
BshNI	GGYRCC	1 cut(s)	418
BshVI	ATCGAT	1 cut(s)	981
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	4 cut(s)	58, 422, 945, 1050
BslFI	GGGAC	3 cut(s)	158, 531, 1017
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	3 cut(s)	158, 531, 1017
BsmI	GAATGC	2 cut(s)	349, 956
BsnI	GGCC	3 cut(s)	485, 948, 1114
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	652, 982
BspACI	CCGC	5 cut(s)	137, 234, 474, 662, 745
BspANI	GGCC	3 cut(s)	485, 948, 1114
BspCNI	CTCAG	3 cut(s)	230, 906, 1154
BspDI	ATCGAT	1 cut(s)	981
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	420, 478
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	977
BspT107I	GGYRCC	1 cut(s)	418
BsrDI	GCAATG	2 cut(s)	269, 441
BsrFI	RCCGGY	3 cut(s)	57, 421, 1049
BsrI	ACTGG	1 cut(s)	1011
BssAI	RCCGGY	3 cut(s)	57, 421, 1049
BssECI	CCNNGG	5 cut(s)	480, 813, 943, 961, 1082
BssMI	GATC	2 cut(s)	652, 982
Bst2UI	CCWGG	2 cut(s)	814, 1084
BstBAI	YACGTR	1 cut(s)	876
BstC8I	GCNNGC	5 cut(s)	126, 145, 231, 333, 537
BstDEI	CTNAG	5 cut(s)	217, 542, 786, 914, 1141
BstDSI	CCRYGG	1 cut(s)	961
BstF5I	GGATG	3 cut(s)	251, 772, 1056
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	655, 985
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	2 cut(s)	652, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 491
BstNI	CCWGG	2 cut(s)	814, 1084
BstNSI	RCATGY	5 cut(s)	65, 714, 810, 971, 1000
BstSCI	CCNGG	3 cut(s)	812, 943, 1082
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	5 cut(s)	87, 127, 372, 536, 937
BstV2I	GAAGAC	1 cut(s)	320
Bsu15I	ATCGAT	1 cut(s)	981
BsuRI	GGCC	3 cut(s)	485, 948, 1114
BsuTUI	ATCGAT	1 cut(s)	981
BtgI	CCRYGG	1 cut(s)	961
BtsCI	GGATG	3 cut(s)	251, 772, 1056
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	5 cut(s)	126, 145, 231, 333, 537
CfoI	GCGC	1 cut(s)	385
Cfr10I	RCCGGY	3 cut(s)	57, 421, 1049
Cfr13I	GGNCC	1 cut(s)	477
ClaI	ATCGAT	1 cut(s)	981
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	49, 553, 877
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	7 cut(s)	62, 711, 807, 826, 968, 974, 997
CviQI	GTAC	3 cut(s)	49, 553, 877
DdeI	CTNAG	5 cut(s)	217, 542, 786, 914, 1141
DpnI	GATC	2 cut(s)	654, 984
DpnII	GATC	2 cut(s)	652, 982
DrdI	GACNNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	638
EaeI	YGGCCR	2 cut(s)	483, 1112
Eco32I	GATATC	3 cut(s)	673, 783, 1013
Eco47I	GGWCC	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	812, 1082
EcoRV	GATATC	3 cut(s)	673, 783, 1013
FaeI	CATG	7 cut(s)	65, 714, 810, 829, 971, 977, 1000
FaqI	GGGAC	3 cut(s)	158, 531, 1017
FatI	CATG	7 cut(s)	61, 710, 806, 825, 967, 973, 996
FauI	CCCGC	1 cut(s)	467
Fnu4HI	GCNGC	7 cut(s)	76, 138, 141, 234, 386, 525, 926
FokI	GGATG	3 cut(s)	238, 759, 1043
Fsp4HI	GCNGC	7 cut(s)	76, 138, 141, 234, 386, 525, 926
FspBI	CTAG	5 cut(s)	101, 603, 842, 929, 1088
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	7 cut(s)	76, 138, 141, 234, 386, 525, 926
GsuI	CTGGAG	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	485, 948, 1114
HapII	CCGG	4 cut(s)	58, 422, 945, 1050
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	7 cut(s)	65, 714, 810, 829, 971, 977, 1000
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HpaII	CCGG	4 cut(s)	58, 422, 945, 1050
HphI	GGTGA	3 cut(s)	351, 466, 651
Hpy166II	GTNNAC	2 cut(s)	187, 405
Hpy188I	TCNGA	6 cut(s)	220, 564, 578, 762, 910, 1144
Hpy188III	TCNNGA	2 cut(s)	14, 1016
Hpy8I	GTNNAC	2 cut(s)	187, 405
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	2 cut(s)	168, 409
HpyCH4IV	ACGT	3 cut(s)	516, 875, 935
HpyCH4V	TGCA	8 cut(s)	274, 331, 349, 388, 524, 535, 714, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 491
HpyF3I	CTNAG	5 cut(s)	217, 542, 786, 914, 1141
HpySE526I	ACGT	3 cut(s)	516, 875, 935
Hsp92II	CATG	7 cut(s)	65, 714, 810, 829, 971, 977, 1000
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	652, 982
LmnI	GCTCC	2 cut(s)	159, 698
Lsp1109I	GCAGC	5 cut(s)	87, 127, 372, 536, 937
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	5 cut(s)	101, 603, 842, 929, 1088
MaeII	ACGT	3 cut(s)	516, 875, 935
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	654, 984
MboI	GATC	2 cut(s)	652, 982
MboII	GAAGA	3 cut(s)	325, 734, 826
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	3 cut(s)	790, 1135, 1148
MmeI	TCCRAC	1 cut(s)	156
MroXI	GAANNNNTTC	1 cut(s)	833
MseI	TTAA	3 cut(s)	609, 750, 1041
MslI	CAYNNNNRTG	3 cut(s)	664, 966, 972
MspI	CCGG	4 cut(s)	58, 422, 945, 1050
MspR9I	CCNGG	3 cut(s)	814, 945, 1084
Mva1269I	GAATGC	2 cut(s)	349, 956
MvaI	CCWGG	2 cut(s)	814, 1084
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	134, 491
NciI	CCSGG	1 cut(s)	945
NdeII	GATC	2 cut(s)	652, 982
NlaIII	CATG	7 cut(s)	65, 714, 810, 829, 971, 977, 1000
NlaIV	GGNNCC	2 cut(s)	420, 478
NmeAIII	GCCGAG	1 cut(s)	461
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	5 cut(s)	65, 714, 810, 971, 1000
PaqCI	CACCTGC	1 cut(s)	370
PciI	ACATGT	2 cut(s)	806, 996
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PctI	GAATGC	2 cut(s)	349, 956
PdmI	GAANNNNTTC	1 cut(s)	833
PflFI	GACNNNGTC	1 cut(s)	638
PkrI	GCNGC	7 cut(s)	77, 139, 142, 235, 387, 526, 927
Ppu21I	YACGTR	1 cut(s)	876
PpuMI	RGGWCCY	1 cut(s)	477
PscI	ACATGT	2 cut(s)	806, 996
Psp1406I	AACGTT	2 cut(s)	516, 935
Psp5II	RGGWCCY	1 cut(s)	477
Psp6I	CCWGG	2 cut(s)	812, 1082
PspGI	CCWGG	2 cut(s)	812, 1082
PspN4I	GGNNCC	2 cut(s)	420, 478
PspPI	GGNCC	1 cut(s)	477
PspPPI	RGGWCCY	1 cut(s)	477
PsyI	GACNNNGTC	1 cut(s)	638
RsaI	GTAC	3 cut(s)	50, 554, 878
RsaNI	GTAC	3 cut(s)	49, 553, 877
RseI	CAYNNNNRTG	3 cut(s)	664, 966, 972
SaqAI	TTAA	3 cut(s)	609, 750, 1041
SatI	GCNGC	7 cut(s)	76, 138, 141, 234, 386, 525, 926
Sau3AI	GATC	2 cut(s)	652, 982
Sau96I	GGNCC	1 cut(s)	477
ScaI	AGTACT	1 cut(s)	50
ScrFI	CCNGG	3 cut(s)	814, 945, 1084
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	835
SinI	GGWCC	1 cut(s)	477
SmiMI	CAYNNNNRTG	3 cut(s)	664, 966, 972
SmlI	CTYRAG	2 cut(s)	14, 106
SmoI	CTYRAG	2 cut(s)	14, 106
Sse9I	AATT	3 cut(s)	790, 1135, 1148
SsiI	CCGC	5 cut(s)	137, 234, 474, 662, 745
SspMI	CTAG	5 cut(s)	101, 603, 842, 929, 1088
StyD4I	CCNGG	3 cut(s)	812, 943, 1082
TaiI	ACGT	3 cut(s)	519, 878, 938
TaqI	TCGA	6 cut(s)	372, 396, 675, 740, 837, 981
TasI	AATT	3 cut(s)	790, 1135, 1148
TatI	WGTACW	2 cut(s)	48, 552
TauI	GCSGC	2 cut(s)	140, 236
Tru1I	TTAA	3 cut(s)	609, 750, 1041
Tru9I	TTAA	3 cut(s)	609, 750, 1041
TscAI	CASTG	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	5 cut(s)	75, 140, 385, 524, 925
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	4 cut(s)	581, 695, 842, 1141
TspRI	CASTG	1 cut(s)	101
Tth111I	GACNNNGTC	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	477
XapI	RAATTY	2 cut(s)	790, 1148
XceI	RCATGY	5 cut(s)	65, 714, 810, 971, 1000
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	833
XspI	CTAG	5 cut(s)	101, 603, 842, 929, 1088
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.