Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006633.1

Orthogroup ID

OG0013111

Physical Location & Seq

Genomic Coordinates Reverse (-)

13763 .. 15856

Gene Structure 2094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006633.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

atggtaggttgcttggggaaaaaactaggaccaaggattttgggaagaaggcttgaatcaagtgtcccagaagttgtttaccaagtattagaagaacccattggcaaagatgaattacaaggaagatctgatattccccagtccctagatgagtttatgactgagataaaggacagcaacatagacgcaaggacttttgctgtcaagctcagagagatgatcacactacttgaggaaagaaccagaaatgcgaaaatccaagagtacttgtacaggcatgtagcatcaagcagcatacctaaacagcttcactgcctagccttgaggttggccaacgaacactcaaccaatgcagccgctcgtctccagctcccgtctgctgaatttgtccctgctcttgtcgataattccttcttccactttgtcctcgcctcagacaatgtccttgccgcttctgttgttgccacttccctggtccaaaactcattgcgccctcacaaagttgtcctccacataatcacggacaggaagacatactgtccaatgcaagcatggttttcattgcatcctttatcccctgcgattattgaggtcaaggcattacaccattttgattggttttcaaagggaaaggtgccagtgttggaagcaatggagaaagaccaaaaagtgagatcacagttcagaggagggtcatcagccattgtggcaaacaatactgataagcctaatgtcattgcagcaaagttgcaggcacttagtcccaagtataattcaatcatgaatcatatcagaatacatctaccagagatgtttcctagtctcaacaaggttgtgttcctggatgatgacgtagtagttcagactgatctttccccactgtgggatattgatatgaatggaaaggtcaacggagcggttgaaacatgcaggggaaaagataaatttgttatgtcgaagaagtttaagagctacctcaacttctcccatcctttgatatcgaacaacttcgaccccaatacatgtgcatgggcttatggcatgaacatattcgatctagaggcttggaggaaaactaacataagccgtacatatcactattggattgaacagaacttgaaatcagacctgagtttgtggcagctaggaacattaccccctggcctaatagcattccatggccatgtccatgttattgatcctttttggcacatgttgggatttggatatcaggaaaacataagttctgccgatgccaagagtgcaggtgtcatccattttaatgggagggcaaagccgtggttagagattgcatttcccaatctccggccactttgggcaaagtacatagacttctccgataaattcatcaagggctgtcatattagggcatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

465

Amino Acids

52.68

Weight (kDa)

8.82

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54690
fragaria_vesca	FvH4_3g21730
malus_domestica	MD03G1212400.v1.1 MD11G1227600.v1.1
prunus_persica	Prupe.4G201700_v2.0.a1 Prupe.4G201700_v2.0.a1
pyrus_communis	pycom03g16110 pycom11g20030
rosa_chinensis	RchiOBHm_Chr5g0037221
rosa_laevigata	RLG00000033766
rosa_multiflora	Rmu_sc0006633.1_g000005 Rmu_sc0022939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043750
rosa_rugosa	Rorug05G0163700
rosa_samantha	Rh5AG253400 Rh5CG288000 Rh5DG263800
rosa_wichuraiana	Rw5G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1256
Acc36I	ACCTGC	1 cut(s)	1256
AccB1I	GGYRCC	1 cut(s)	634
AccBSI	CCGCTC	2 cut(s)	359, 917
AciI	CCGC	3 cut(s)	357, 450, 917
AclWI	GGATC	1 cut(s)	1193
AcoI	YGGCCR	3 cut(s)	330, 1180, 1328
AcsI	RAATTY	3 cut(s)	383, 944, 1364
AfaI	GTAC	4 cut(s)	266, 272, 1090, 1346
AfiI	CCNNNNNNNGG	3 cut(s)	882, 883, 1326
AflIII	ACRYGT	2 cut(s)	1022, 1212
AgsI	TTSAA	6 cut(s)	56, 624, 777, 923, 1109, 1120
AhdI	GACNNNNNGTC	1 cut(s)	537
AjnI	CCWGG	3 cut(s)	471, 840, 1159
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	5 cut(s)	208, 307, 370, 972, 1144
AluI	AGCT	5 cut(s)	208, 307, 370, 972, 1144
Alw26I	GTCTC	2 cut(s)	368, 827
AlwI	GGATC	1 cut(s)	1193
AoxI	GGCC	4 cut(s)	330, 1162, 1180, 1328
ApeKI	GCWGC	4 cut(s)	291, 353, 740, 1141
ApoI	RAATTY	3 cut(s)	383, 944, 1364
Asp700I	GAANNNNTTC	2 cut(s)	1007, 1049
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	29, 475
AvaII	GGWCC	2 cut(s)	29, 475
BalI	TGGCCA	2 cut(s)	332, 1182
BanI	GGYRCC	1 cut(s)	634
BarI	GAAGNNNNNNTAC	2 cut(s)	1337, 1369
BbsI	GAAGAC	1 cut(s)	536
BbvI	GCAGC	4 cut(s)	303, 365, 752, 1153
BccI	CCATC	1 cut(s)	996
BceAI	ACGGC	2 cut(s)	1071, 1282
BciT130I	CCWGG	3 cut(s)	473, 842, 1161
BclI	TGATCA	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	368, 827
BfaI	CTAG	6 cut(s)	26, 146, 317, 819, 1058, 1145
BfuAI	ACCTGC	1 cut(s)	1256
BglI	GCCNNNNNGGC	1 cut(s)	707
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	6 cut(s)	292, 354, 357, 450, 741, 1142
BlsI	GCNGC	6 cut(s)	293, 355, 358, 451, 742, 1143
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	3 cut(s)	473, 842, 1161
Bme18I	GGWCC	2 cut(s)	29, 475
BmeRI	GACNNNNNGTC	1 cut(s)	537
BmgT120I	GGNCC	2 cut(s)	29, 475
BmiI	GGNNCC	1 cut(s)	636
BmrFI	CCNGG	3 cut(s)	473, 842, 1161
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	3 cut(s)	293, 574, 1243
BmuI	ACTGGG	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	536
BpmI	CTGGAG	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	251, 343
BsaJI	CCNNGG	5 cut(s)	32, 471, 1159, 1177, 1298
Bsc4I	CCNNNNNNNGG	3 cut(s)	882, 883, 1326
Bse1I	ACTGG	2 cut(s)	139, 638
Bse3DI	GCAATG	4 cut(s)	485, 560, 657, 735
BseBI	CCWGG	3 cut(s)	473, 842, 1161
BseDI	CCNNGG	5 cut(s)	32, 471, 1159, 1177, 1298
BseGI	GGATG	4 cut(s)	565, 850, 988, 1272
BseLI	CCNNNNNNNGG	3 cut(s)	882, 883, 1326
BseMI	GCAATG	4 cut(s)	485, 560, 657, 735
BseMII	CTCAG	4 cut(s)	153, 223, 447, 1121
BseNI	ACTGG	2 cut(s)	139, 638
BseRI	GAGGAG	1 cut(s)	702
BseXI	GCAGC	4 cut(s)	303, 365, 752, 1153
BsgI	GTGCAG	1 cut(s)	1284
BshFI	GGCC	4 cut(s)	332, 1164, 1182, 1330
BshNI	GGYRCC	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	1327
BslFI	GGGAC	4 cut(s)	50, 127, 374, 747
BslI	CCNNNNNNNGG	3 cut(s)	882, 883, 1326
BsmAI	GTCTC	2 cut(s)	368, 827
BsmBI	CGTCTC	1 cut(s)	368
BsmFI	GGGAC	4 cut(s)	50, 127, 374, 747
BsmI	GAATGC	1 cut(s)	1172
BsnI	GGCC	4 cut(s)	332, 1164, 1182, 1330
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	6 cut(s)	125, 219, 674, 868, 1054, 1198
Bsp19I	CCATGG	1 cut(s)	1177
BspACI	CCGC	3 cut(s)	357, 450, 917
BspANI	GGCC	4 cut(s)	332, 1164, 1182, 1330
BspCNI	CTCAG	4 cut(s)	154, 222, 446, 1122
BspHI	TCATGA	1 cut(s)	780
BspLI	GGNNCC	1 cut(s)	636
BspMI	ACCTGC	1 cut(s)	1256
BspPI	GGATC	1 cut(s)	1193
BspT107I	GGYRCC	1 cut(s)	634
BsrBI	CCGCTC	2 cut(s)	359, 917
BsrDI	GCAATG	4 cut(s)	485, 560, 657, 735
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	139, 638
BssECI	CCNNGG	5 cut(s)	32, 471, 1159, 1177, 1298
BssMI	GATC	6 cut(s)	125, 219, 674, 868, 1054, 1198
BssT1I	CCWWGG	2 cut(s)	32, 1177
Bst2UI	CCWGG	3 cut(s)	473, 842, 1161
Bst4CI	ACNGT	3 cut(s)	539, 681, 882
BstAUI	TGTACA	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	549, 753
BstDEI	CTNAG	6 cut(s)	162, 209, 433, 758, 1130, 1395
BstDSI	CCRYGG	2 cut(s)	1177, 1298
BstF5I	GGATG	4 cut(s)	565, 850, 988, 1272
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	6 cut(s)	128, 222, 677, 871, 1057, 1201
BstMAI	GTCTC	2 cut(s)	368, 827
BstMBI	GATC	6 cut(s)	125, 219, 674, 868, 1054, 1198
BstMWI	GCNNNNNNNGC	2 cut(s)	707, 1262
BstNI	CCWGG	3 cut(s)	473, 842, 1161
BstNSI	RCATGY	4 cut(s)	281, 930, 1026, 1216
BstSCI	CCNGG	3 cut(s)	471, 840, 1159
BstV1I	GCAGC	4 cut(s)	303, 365, 752, 1153
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	1 cut(s)	125
BstXI	CCANNNNNNTGG	2 cut(s)	472, 1283
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	4 cut(s)	332, 1164, 1182, 1330
BtgI	CCRYGG	2 cut(s)	1177, 1298
BtsCI	GGATG	4 cut(s)	565, 850, 988, 1272
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	3 cut(s)	310, 645, 878
BveI	ACCTGC	1 cut(s)	1256
Cac8I	GCNNGC	2 cut(s)	549, 753
CciI	TCATGA	1 cut(s)	780
CfoI	GCGC	1 cut(s)	492
Cfr13I	GGNCC	2 cut(s)	29, 475
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	4 cut(s)	265, 271, 1089, 1345
CviQI	GTAC	4 cut(s)	265, 271, 1089, 1345
DdeI	CTNAG	6 cut(s)	162, 209, 433, 758, 1130, 1395
DpnI	GATC	6 cut(s)	127, 221, 676, 870, 1056, 1200
DpnII	GATC	6 cut(s)	125, 219, 674, 868, 1054, 1198
DriI	GACNNNNNGTC	1 cut(s)	537
EaeI	YGGCCR	3 cut(s)	330, 1180, 1328
Eam1105I	GACNNNNNGTC	1 cut(s)	537
Eco130I	CCWWGG	2 cut(s)	32, 1177
Eco32I	GATATC	2 cut(s)	999, 1229
Eco47I	GGWCC	2 cut(s)	29, 475
EcoRII	CCWGG	3 cut(s)	471, 840, 1159
EcoRV	GATATC	2 cut(s)	999, 1229
EcoT14I	CCWWGG	2 cut(s)	32, 1177
ErhI	CCWWGG	2 cut(s)	32, 1177
Esp3I	CGTCTC	1 cut(s)	368
FaqI	GGGAC	4 cut(s)	50, 127, 374, 747
FbaI	TGATCA	1 cut(s)	219
Fnu4HI	GCNGC	6 cut(s)	292, 354, 357, 450, 741, 1142
FokI	GGATG	4 cut(s)	552, 857, 975, 1259
Fsp4HI	GCNGC	6 cut(s)	292, 354, 357, 450, 741, 1142
FspBI	CTAG	6 cut(s)	26, 146, 317, 819, 1058, 1145
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	6 cut(s)	292, 354, 357, 450, 741, 1142
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	4 cut(s)	332, 1164, 1182, 1330
HapII	CCGG	1 cut(s)	1327
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	492
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HinfI	GANTC	2 cut(s)	56, 784
HpaII	CCGG	1 cut(s)	1327
Hpy166II	GTNNAC	2 cut(s)	79, 910
Hpy188I	TCNGA	8 cut(s)	130, 212, 436, 686, 794, 864, 1126, 1360
Hpy188III	TCNNGA	3 cut(s)	781, 1058, 1232
Hpy8I	GTNNAC	2 cut(s)	79, 910
HpyAV	CCTTC	2 cut(s)	42, 421
HpyCH4III	ACNGT	3 cut(s)	539, 681, 882
HpyCH4IV	ACGT	1 cut(s)	852
HpyCH4V	TGCA	9 cut(s)	353, 547, 565, 740, 751, 930, 1028, 1265, 1313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	707, 1262
HpyF3I	CTNAG	6 cut(s)	162, 209, 433, 758, 1130, 1395
HpySE526I	ACGT	1 cut(s)	852
HspAI	GCGC	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	6 cut(s)	125, 219, 674, 868, 1054, 1198
LmnI	GCTCC	2 cut(s)	375, 914
Lsp1109I	GCAGC	4 cut(s)	303, 365, 752, 1153
LweI	GCATC	3 cut(s)	293, 574, 1243
MaeI	CTAG	6 cut(s)	26, 146, 317, 819, 1058, 1145
MaeII	ACGT	1 cut(s)	852
MalI	GATC	6 cut(s)	127, 221, 676, 870, 1056, 1200
MbiI	CCGCTC	2 cut(s)	359, 917
MboI	GATC	6 cut(s)	125, 219, 674, 868, 1054, 1198
MboII	GAAGA	6 cut(s)	57, 104, 135, 406, 541, 970
MflI	RGATCY	1 cut(s)	125
MlsI	TGGCCA	2 cut(s)	332, 1182
MluCI	AATT	6 cut(s)	113, 383, 406, 772, 944, 1364
MluNI	TGGCCA	2 cut(s)	332, 1182
MmeI	TCCRAC	1 cut(s)	624
Mox20I	TGGCCA	2 cut(s)	332, 1182
MroXI	GAANNNNTTC	2 cut(s)	1007, 1049
MscI	TGGCCA	2 cut(s)	332, 1182
MseI	TTAA	2 cut(s)	966, 1281
MslI	CAYNNNNRTG	4 cut(s)	1027, 1182, 1188, 1281
Msp20I	TGGCCA	2 cut(s)	332, 1182
MspI	CCGG	1 cut(s)	1327
MspR9I	CCNGG	3 cut(s)	473, 842, 1161
Mva1269I	GAATGC	1 cut(s)	1172
MvaI	CCWGG	3 cut(s)	473, 842, 1161
MwoI	GCNNNNNNNGC	2 cut(s)	707, 1262
NcoI	CCATGG	1 cut(s)	1177
NdeII	GATC	6 cut(s)	125, 219, 674, 868, 1054, 1198
NlaIV	GGNNCC	1 cut(s)	636
NspI	RCATGY	4 cut(s)	281, 930, 1026, 1216
PagI	TCATGA	1 cut(s)	780
PaqCI	CACCTGC	1 cut(s)	1256
PciI	ACATGT	2 cut(s)	1022, 1212
PctI	GAATGC	1 cut(s)	1172
PdmI	GAANNNNTTC	2 cut(s)	1007, 1049
PfeI	GAWTC	2 cut(s)	56, 784
PflFI	GACNNNGTC	1 cut(s)	440
PfoI	TCCNGGA	1 cut(s)	840
PkrI	GCNGC	6 cut(s)	293, 355, 358, 451, 742, 1143
PscI	ACATGT	2 cut(s)	1022, 1212
Psp6I	CCWGG	3 cut(s)	471, 840, 1159
PspGI	CCWGG	3 cut(s)	471, 840, 1159
PspN4I	GGNNCC	1 cut(s)	636
PspPI	GGNCC	2 cut(s)	29, 475
PsuI	RGATCY	1 cut(s)	125
PsyI	GACNNNGTC	1 cut(s)	440
RsaI	GTAC	4 cut(s)	266, 272, 1090, 1346
RsaNI	GTAC	4 cut(s)	265, 271, 1089, 1345
RseI	CAYNNNNRTG	4 cut(s)	1027, 1182, 1188, 1281
SaqAI	TTAA	2 cut(s)	966, 1281
SatI	GCNGC	6 cut(s)	292, 354, 357, 450, 741, 1142
Sau3AI	GATC	6 cut(s)	125, 219, 674, 868, 1054, 1198
Sau96I	GGNCC	2 cut(s)	29, 475
ScaI	AGTACT	1 cut(s)	266
ScrFI	CCNGG	3 cut(s)	473, 842, 1161
SfaNI	GCATC	3 cut(s)	293, 574, 1243
SinI	GGWCC	2 cut(s)	29, 475
SmiMI	CAYNNNNRTG	4 cut(s)	1027, 1182, 1188, 1281
SmlI	CTYRAG	2 cut(s)	230, 322
SmoI	CTYRAG	2 cut(s)	230, 322
Sse9I	AATT	6 cut(s)	113, 383, 406, 772, 944, 1364
SsiI	CCGC	3 cut(s)	357, 450, 917
SspMI	CTAG	6 cut(s)	26, 146, 317, 819, 1058, 1145
StyD4I	CCNGG	3 cut(s)	471, 840, 1159
StyI	CCWWGG	2 cut(s)	32, 1177
TaaI	ACNGT	3 cut(s)	539, 681, 882
TaiI	ACGT	1 cut(s)	855
TaqI	TCGA	5 cut(s)	402, 956, 1001, 1011, 1053
TasI	AATT	6 cut(s)	113, 383, 406, 772, 944, 1364
TatI	WGTACW	3 cut(s)	264, 270, 1344
TauI	GCSGC	2 cut(s)	359, 452
TfiI	GAWTC	2 cut(s)	56, 784
Tru1I	TTAA	2 cut(s)	966, 1281
Tru9I	TTAA	2 cut(s)	966, 1281
TscAI	CASTG	3 cut(s)	317, 645, 885
TseI	GCWGC	4 cut(s)	291, 353, 740, 1141
TspDTI	ATGAA	6 cut(s)	126, 549, 797, 911, 1058, 1357
TspGWI	ACGGA	2 cut(s)	536, 927
TspRI	CASTG	3 cut(s)	317, 645, 885
Tth111I	GACNNNGTC	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	29, 475
XapI	RAATTY	3 cut(s)	383, 944, 1364
XbaI	TCTAGA	1 cut(s)	1057
XceI	RCATGY	4 cut(s)	281, 930, 1026, 1216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	549
XmnI	GAANNNNTTC	2 cut(s)	1007, 1049
XspI	CTAG	6 cut(s)	26, 146, 317, 819, 1058, 1145
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.