Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008375

Physical Location & Seq

Genomic Coordinates Forward (+)

22667220 .. 22669631

Gene Structure 2412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAATACACGTTATTCCAATCAGCCGGAGTTATCTTCTAGTAATATCACGATCACTATTTCATCGTCTGCTTTGTTAAGCTCCTCACCGCGAGGCGATAACAGTCATGTTGCTGCTGCTAATGGTCAAGAGAGGTCTCCATCTTCGTTTTATATAAGGCTGGCTATGAAGGTATCTAGAGCTAGATGGTTCATCTTCTTGAGAAGAGTGTTTCACTACCAGAACGGTTCAAGATCTGACCTTGGGTCTAATCCTTTCAATTCTAGCACTTGGATGATGTCTGAGCTCATTGCTCTACTTGTTCAGCTCACTGTGATAACATTCACTCTAGCTATCTCCAAAGAAGAGAGACCAATTTGGCCAGTGAGGCTATGGATCACAGGATACGATGTGGGATGTCTTTTGAATCTCATGCTGTTATATGGTCGGTATCGTCAACTAGACATTAACCAAGGAAATGGGTTTGTCCTTGGCGATGTTGAGCAGCAACAGAGAGGCAGAGAAGAAACTAGGTCCTCTCACTTGATGAACAAATGCAGAACGTCGCTAGAGCTTTTCTTTGCGATTTGGTTTGTGATTGGAAATGTTTGGGTGTTCGATTCTAGGTTTGGTTCTTTCCACCATGCTCCCAAGCTTCACGTTCTCTGCGTCTCTCTTTTAGCTTGGAACGCTATCTGCTATTCCTTTCCCTTTCTTCTCTTCCTCTTCCTCTGTTGCCTTGTTCCTCTCATAAGTAGCCTCCTTGGATATAACATGAACATGGGATCCTCAGACAGAGCAGCATCAGATGACCAAATCTCTAGTCTCCCTAGCTGGAAATTCAAACGAATCGACGATAGTGCTTCTGATTCTGATTCAGATTCAGCTACTGTAACTGATGATCCAGAGTGTTGTATATGTTTGGCAAAGTATAAAGACAAAGAAGAAGTAAGGAAGCTTCCATGTTCACATAAGTTTCACTCAAAGTGTGTAGATCAATGGCTTCGTATCATCTCTTGTTGTCCTCTCTGCAAACAAGATCTTCCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

343

Amino Acids

39.04

Weight (kDa)

8.5

Isoelectric Point (pI)

53.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	296 - 338	1.2e-12	Ring finger domain
zf-RING_11	PF17123	296 - 324	2e-11	RING-like zinc finger
zf-rbx1	PF12678	296 - 338	6.6e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55970 AT5G55970 AT5G55970
fragaria_vesca	FvH4_3g42300 FvH4_3g42300
malus_domestica	MD03G1034800.v1.1 MD11G1036700.v1.1
prunus_persica	Prupe.6G028000_v2.0.a1 Prupe.6G028000_v2.0.a1
pyrus_communis	pycom03g02700 pycom11g03040
rosa_chinensis	RchiOBHm_Chr5g0075651
rosa_laevigata	RLG00000036585
rosa_multiflora	Rmu_sc0001764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005940 Rroxscaffold_3G00219110
rosa_rugosa	Rorug05G0442000 Rorug05G0442100
rosa_samantha	Rh5AG498400 Rh5BG519300 Rh5CG542900 Rh5DG529900
rosa_wichuraiana	Rw5G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	91
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	4 cut(s)	383, 759, 772, 875
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	818
AflIII	ACRYGT	1 cut(s)	8
AgsI	TTSAA	4 cut(s)	231, 259, 406, 823
AhdI	GACNNNNNGTC	1 cut(s)	244
AloI	GAACNNNNNNTCC	2 cut(s)	749, 781
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	4 cut(s)	141, 343, 655, 809
AlwI	GGATC	4 cut(s)	383, 759, 772, 875
AlwNI	CAGNNNCTG	1 cut(s)	869
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	4 cut(s)	113, 116, 484, 779
ApoI	RAATTY	1 cut(s)	818
ArsI	GACNNNNNNTTYG	2 cut(s)	787, 819
AspS9I	GGNCC	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	513
BalI	TGGCCA	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	921, 953
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	4 cut(s)	100, 103, 496, 791
BccI	CCATC	2 cut(s)	148, 180
BcgI	CGANNNNNNTGC	2 cut(s)	821, 855
BciVI	GTATCC	1 cut(s)	377
BcoDI	GTCTC	4 cut(s)	141, 343, 655, 809
BfuI	GTATCC	1 cut(s)	377
BglI	GCCNNNNNGGC	1 cut(s)	367
BglII	AGATCT	2 cut(s)	233, 1018
BisI	GCNGC	4 cut(s)	114, 117, 485, 780
BlsI	GCNGC	4 cut(s)	115, 118, 486, 781
Bme18I	GGWCC	1 cut(s)	513
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	1 cut(s)	766
BmsI	GCATC	1 cut(s)	791
BpuEI	CTTGAG	1 cut(s)	220
BsaI	GGTCTC	2 cut(s)	141, 343
BsaJI	CCNNGG	4 cut(s)	241, 451, 469, 742
Bse1I	ACTGG	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	4 cut(s)	241, 451, 469, 742
BseGI	GGATG	2 cut(s)	279, 401
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	273, 783
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	4 cut(s)	100, 103, 496, 791
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	26
BsmAI	GTCTC	4 cut(s)	141, 343, 655, 809
BsmBI	CGTCTC	1 cut(s)	655
BsnI	GGCC	1 cut(s)	361
Bso31I	GGTCTC	2 cut(s)	141, 343
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	7 cut(s)	51, 233, 375, 764, 880, 973, 1018
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	2 cut(s)	274, 782
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	766
BspPI	GGATC	4 cut(s)	383, 759, 772, 875
BspTNI	GGTCTC	2 cut(s)	141, 343
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	4 cut(s)	241, 451, 469, 742
BssMI	GATC	7 cut(s)	51, 233, 375, 764, 880, 973, 1018
BssT1I	CCWWGG	4 cut(s)	241, 451, 469, 742
Bst4CI	ACNGT	4 cut(s)	104, 227, 313, 871
Bst6I	CTCTTC	4 cut(s)	199, 339, 704, 710
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	282, 769
BstF5I	GGATG	2 cut(s)	279, 401
BstFNI	CGCG	1 cut(s)	91
BstKTI	GATC	7 cut(s)	54, 236, 378, 767, 883, 976, 1021
BstMAI	GTCTC	4 cut(s)	141, 343, 655, 809
BstMBI	GATC	7 cut(s)	51, 233, 375, 764, 880, 973, 1018
BstMWI	GCNNNNNNNGC	2 cut(s)	367, 668
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	4 cut(s)	100, 103, 496, 791
BstX2I	RGATCY	3 cut(s)	233, 764, 1018
BstXI	CCANNNNNNTGG	1 cut(s)	458
BstYI	RGATCY	3 cut(s)	233, 764, 1018
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	361
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	279, 401
BtsIMutI	CAGTG	2 cut(s)	309, 369
Cac8I	GCNNGC	1 cut(s)	162
CaiI	CAGNNNCTG	1 cut(s)	869
Cfr13I	GGNCC	1 cut(s)	513
CseI	GACGC	1 cut(s)	637
CviAII	CATG	6 cut(s)	107, 412, 623, 754, 760, 942
DdeI	CTNAG	2 cut(s)	282, 769
DpnI	GATC	7 cut(s)	53, 235, 377, 766, 882, 975, 1020
DpnII	GATC	7 cut(s)	51, 233, 375, 764, 880, 973, 1018
DriI	GACNNNNNGTC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	4 cut(s)	199, 339, 704, 710
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	4 cut(s)	199, 339, 704, 710
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	4 cut(s)	241, 451, 469, 742
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	2 cut(s)	141, 343
Eco47I	GGWCC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	513
EcoT14I	CCWWGG	4 cut(s)	241, 451, 469, 742
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	4 cut(s)	241, 451, 469, 742
Esp3I	CGTCTC	1 cut(s)	655
FaeI	CATG	6 cut(s)	110, 415, 626, 757, 763, 945
FatI	CATG	6 cut(s)	106, 411, 622, 753, 759, 941
Fnu4HI	GCNGC	4 cut(s)	114, 117, 485, 780
FokI	GGATG	2 cut(s)	286, 408
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	4 cut(s)	114, 117, 485, 780
GluI	GCNGC	4 cut(s)	114, 117, 485, 780
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	637
Hin1II	CATG	6 cut(s)	110, 415, 626, 757, 763, 945
HincII	GTYRAC	1 cut(s)	437
HindII	GTYRAC	1 cut(s)	437
HindIII	AAGCTT	2 cut(s)	632, 935
HinfI	GANTC	6 cut(s)	406, 599, 828, 848, 854, 860
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	437, 947
Hpy188I	TCNGA	7 cut(s)	238, 283, 772, 787, 847, 853, 859
Hpy188III	TCNNGA	6 cut(s)	49, 128, 177, 199, 231, 884
Hpy8I	GTNNAC	2 cut(s)	437, 947
Hpy99I	CGWCG	2 cut(s)	547, 836
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	4 cut(s)	104, 227, 313, 871
HpyCH4IV	ACGT	3 cut(s)	10, 542, 639
HpyCH4V	TGCA	2 cut(s)	537, 1011
HpyF10VI	GCNNNNNNNGC	2 cut(s)	367, 668
HpyF3I	CTNAG	2 cut(s)	282, 769
HpySE526I	ACGT	3 cut(s)	10, 542, 639
Hsp92II	CATG	6 cut(s)	110, 415, 626, 757, 763, 945
Kzo9I	GATC	7 cut(s)	51, 233, 375, 764, 880, 973, 1018
LmnI	GCTCC	2 cut(s)	86, 631
LpnPI	CCDG	7 cut(s)	39, 146, 233, 366, 375, 799, 897
Lsp1109I	GCAGC	4 cut(s)	100, 103, 496, 791
LweI	GCATC	1 cut(s)	791
MaeII	ACGT	3 cut(s)	10, 542, 639
MaeIII	GTNAC	1 cut(s)	871
MalI	GATC	7 cut(s)	53, 235, 377, 766, 882, 975, 1020
MboI	GATC	7 cut(s)	51, 233, 375, 764, 880, 973, 1018
MflI	RGATCY	3 cut(s)	233, 764, 1018
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	3 cut(s)	259, 354, 818
MluNI	TGGCCA	1 cut(s)	361
Mox20I	TGGCCA	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	2 cut(s)	77, 447
MslI	CAYNNNNRTG	2 cut(s)	272, 758
Msp20I	TGGCCA	1 cut(s)	361
MspI	CCGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	2 cut(s)	367, 668
NdeII	GATC	7 cut(s)	51, 233, 375, 764, 880, 973, 1018
NlaIII	CATG	6 cut(s)	110, 415, 626, 757, 763, 945
NlaIV	GGNNCC	1 cut(s)	766
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PfeI	GAWTC	6 cut(s)	406, 599, 828, 848, 854, 860
PkrI	GCNGC	4 cut(s)	115, 118, 486, 781
PpuMI	RGGWCCY	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	766
PspPI	GGNCC	1 cut(s)	513
PspPPI	RGGWCCY	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	869
PsuI	RGATCY	3 cut(s)	233, 764, 1018
RseI	CAYNNNNRTG	2 cut(s)	272, 758
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	77, 447
SatI	GCNGC	4 cut(s)	114, 117, 485, 780
Sau3AI	GATC	7 cut(s)	51, 233, 375, 764, 880, 973, 1018
Sau96I	GGNCC	1 cut(s)	513
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	791
SinI	GGWCC	1 cut(s)	513
SmiMI	CAYNNNNRTG	2 cut(s)	272, 758
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	3 cut(s)	259, 354, 818
SsiI	CCGC	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	288
StyI	CCWWGG	4 cut(s)	241, 451, 469, 742
TaaI	ACNGT	4 cut(s)	104, 227, 313, 871
TaiI	ACGT	3 cut(s)	13, 545, 642
TaqI	TCGA	2 cut(s)	597, 831
TasI	AATT	3 cut(s)	259, 354, 818
TfiI	GAWTC	6 cut(s)	406, 599, 828, 848, 854, 860
Tru1I	TTAA	2 cut(s)	77, 447
Tru9I	TTAA	2 cut(s)	77, 447
TscAI	CASTG	2 cut(s)	316, 369
TseI	GCWGC	4 cut(s)	113, 116, 484, 779
TspDTI	ATGAA	6 cut(s)	17, 51, 181, 182, 542, 770
TspRI	CASTG	2 cut(s)	316, 369
VpaK11BI	GGWCC	1 cut(s)	513
XapI	RAATTY	1 cut(s)	818
XbaI	TCTAGA	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.