Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008375

Physical Location & Seq

Genomic Coordinates Forward (+)

2195054 .. 2198655

Gene Structure 3602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G028000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAATACCCGTTACCTTTTTCCATCAGAGCCCATGTGTAACTCTGCTGGCAGTGCGGTTTCATTTTCATCAACTTCTCCAGGAGATGATCGGACGGCTGTTAGTGTAATCAGAACAAGGTCCTCTAGAGCTCCCCCTTCTTCATTCTTAATGAGAATGGCTATGAGAATATCAAGAGCAAGGTGGTTCATCTTCTTAAGAAGAGTATTCCACTACCAAAATGGTTCAAGGTCTGATCTTGGGTCAAACCCTTTCAATTCCAGCACTTGGATGATGCTGGAATTTATTGCTTTGGTTGTTCAAATAAGTATCACCACAATTACTTTGGCTGTTTCAAAGAAGGAGAGGCCGGTTTGGCCTATGAGAATTTGGATTGTTGGGTATGATATTGGTTGTTTTCTCAATTTGCTGGTGCTCTTCGGGCGTTACAGGCTACTTTATTTGTCTCAAGGAGATGGTTTCAACCTCTCTGACATGGAACAGCAGAGAAGCACTGAAGAATCCAGGACCACACATTTGATGAACAGGTGTAGGACCTCACTTGAGCTATTCTTTGCAATATGGTTTGTAATGGGTAATGTTTGGGTCTTCGATTCTCGCTTTAGTTCATTTCCTGGAGCTCCAAAACTCCATGTGCTCTGCATCTCTCTGCTTGCTTGGAATGCCATCAGCTACTCTTTTCCCTTCCTGCTGTTTGTGCTGCTATGCTGCTGTGTTCCCCTAATGAGCAGCCTGCTTGGATACAACATGAACATGGGGTCCATTGATAAAGCAGCATCTGATGACCAAATTTCTCAGCTTCCCAGCTGGAGATATAAAGAAGTTAACACCAAAGTAGAGCTCGGAAATGATTGTGATTCAGGATGCCTTGCAAATGAAGATCCAGATTGCTGTATTTGCCTGGCTAAATATAAAGACACGGAAGAAGTAAGGCAGTTGCCATGTTCGCATATGTTTCACCTCAAGTGCGTTGATCAGTGGCTCAGGATCATATCTTGTTGTCCTCTTTGCAAGCAAGAACTGCAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

344

Amino Acids

39.25

Weight (kDa)

8.54

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55970 AT5G55970 AT5G55970
fragaria_vesca	FvH4_3g42300 FvH4_3g42300
malus_domestica	MD03G1034800.v1.1 MD11G1036700.v1.1
prunus_persica	Prupe.6G028000_v2.0.a1 Prupe.6G028000_v2.0.a1
pyrus_communis	pycom03g02700 pycom11g03040
rosa_chinensis	RchiOBHm_Chr5g0075651
rosa_laevigata	RLG00000036585
rosa_multiflora	Rmu_sc0001764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005940 Rroxscaffold_3G00219110
rosa_rugosa	Rorug05G0442000 Rorug05G0442100
rosa_samantha	Rh5AG498400 Rh5BG519300 Rh5CG542900 Rh5DG529900
rosa_wichuraiana	Rw5G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	267
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	2 cut(s)	875, 995
AcsI	RAATTY	3 cut(s)	281, 366, 789
AcuI	CTGAAG	1 cut(s)	516
AfiI	CCNNNNNNNGG	1 cut(s)	267
AflII	CTTAAG	1 cut(s)	196
AgsI	TTSAA	5 cut(s)	228, 256, 302, 336, 463
AjnI	CCWGG	4 cut(s)	79, 503, 613, 900
AloI	GAACNNNNNNTCC	2 cut(s)	743, 775
AluBI	AGCT	7 cut(s)	131, 547, 620, 672, 799, 807, 841
AluI	AGCT	7 cut(s)	131, 547, 620, 672, 799, 807, 841
Alw21I	GWGCWC	5 cut(s)	133, 417, 622, 639, 843
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	875, 995
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	2 cut(s)	347, 356
ApeKI	GCWGC	4 cut(s)	700, 708, 729, 773
ApoI	RAATTY	3 cut(s)	281, 366, 789
ArsI	GACNNNNNNTTYG	2 cut(s)	499, 531
AspS9I	GGNCC	4 cut(s)	120, 507, 534, 759
AsuHPI	GGTGA	2 cut(s)	304, 950
AvaII	GGWCC	4 cut(s)	120, 507, 534, 759
BanII	GRGCYC	4 cut(s)	33, 133, 622, 843
BbsI	GAAGAC	1 cut(s)	580
Bbv12I	GWGCWC	5 cut(s)	133, 417, 622, 639, 843
BbvI	GCAGC	4 cut(s)	687, 695, 741, 785
BccI	CCATC	3 cut(s)	31, 449, 674
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	4 cut(s)	81, 505, 615, 902
BciVI	GTATCC	1 cut(s)	734
BclI	TGATCA	1 cut(s)	973
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	1022
BfrI	CTTAAG	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	734
BglI	GCCNNNNNGGC	1 cut(s)	355
BisI	GCNGC	4 cut(s)	701, 709, 730, 774
BlsI	GCNGC	4 cut(s)	702, 710, 731, 775
Bme1390I	CCNGG	4 cut(s)	81, 505, 615, 902
Bme18I	GGWCC	4 cut(s)	120, 507, 534, 759
BmgT120I	GGNCC	4 cut(s)	120, 507, 534, 759
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	4 cut(s)	81, 505, 615, 902
BmsI	GCATC	4 cut(s)	264, 651, 785, 854
BpiI	GAAGAC	1 cut(s)	580
BpmI	CTGGAG	3 cut(s)	63, 636, 829
Bpu10I	CCTNAGC	1 cut(s)	983
BpuEI	CTTGAG	3 cut(s)	432, 563, 947
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	349
BseBI	CCWGG	4 cut(s)	81, 505, 615, 902
BseGI	GGATG	2 cut(s)	276, 869
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	809, 997
BseXI	GCAGC	4 cut(s)	687, 695, 741, 785
BseYI	CCCAGC	1 cut(s)	803
BshFI	GGCC	2 cut(s)	349, 358
BsiHKAI	GWGCWC	5 cut(s)	133, 417, 622, 639, 843
BsiSI	CCGG	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	450
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	2 cut(s)	349, 358
Bsp1286I	GDGCHC	6 cut(s)	33, 133, 417, 622, 639, 843
Bsp143I	GATC	5 cut(s)	88, 235, 880, 973, 987
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	2 cut(s)	349, 358
BspCNI	CTCAG	2 cut(s)	808, 996
BspLI	GGNNCC	1 cut(s)	760
BspMAI	CTGCAG	1 cut(s)	1026
BspPI	GGATC	2 cut(s)	875, 995
BspQI	GCTCTTC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	349
BssAI	RCCGGY	1 cut(s)	349
BssMI	GATC	5 cut(s)	88, 235, 880, 973, 987
Bst2UI	CCWGG	4 cut(s)	81, 505, 615, 902
Bst6I	CTCTTC	2 cut(s)	196, 422
BstAFI	CTTAAG	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	1021
BstC8I	GCNNGC	4 cut(s)	49, 654, 734, 1013
BstDEI	CTNAG	2 cut(s)	795, 983
BstF5I	GGATG	2 cut(s)	276, 869
BstKTI	GATC	5 cut(s)	91, 238, 883, 976, 990
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	5 cut(s)	88, 235, 880, 973, 987
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 355, 421, 430, 662, 697, 897, 946, 1021
BstNI	CCWGG	4 cut(s)	81, 505, 615, 902
BstSCI	CCNGG	4 cut(s)	79, 503, 613, 900
BstSFI	CTRYAG	1 cut(s)	1022
BstV1I	GCAGC	4 cut(s)	687, 695, 741, 785
BstV2I	GAAGAC	1 cut(s)	580
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
BsuI	GTATCC	1 cut(s)	734
BsuRI	GGCC	2 cut(s)	349, 358
BtsCI	GGATG	2 cut(s)	276, 869
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	3 cut(s)	58, 492, 983
Cac8I	GCNNGC	4 cut(s)	49, 654, 734, 1013
CaiI	CAGNNNCTG	1 cut(s)	779
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	4 cut(s)	120, 507, 534, 759
CviAII	CATG	6 cut(s)	34, 475, 632, 748, 754, 942
DdeI	CTNAG	2 cut(s)	795, 983
DpnI	GATC	5 cut(s)	90, 237, 882, 975, 989
DpnII	GATC	5 cut(s)	88, 235, 880, 973, 987
Eam1104I	CTCTTC	2 cut(s)	196, 422
EarI	CTCTTC	2 cut(s)	196, 422
Ecl136II	GAGCTC	3 cut(s)	131, 620, 841
Eco24I	GRGCYC	4 cut(s)	33, 133, 622, 843
Eco47I	GGWCC	4 cut(s)	120, 507, 534, 759
Eco53kI	GAGCTC	3 cut(s)	131, 620, 841
Eco57I	CTGAAG	1 cut(s)	516
EcoICRI	GAGCTC	3 cut(s)	131, 620, 841
EcoO109I	RGGNCCY	2 cut(s)	120, 534
EcoRII	CCWGG	4 cut(s)	79, 503, 613, 900
EcoT38I	GRGCYC	4 cut(s)	33, 133, 622, 843
FaeI	CATG	6 cut(s)	37, 478, 635, 751, 757, 945
FatI	CATG	6 cut(s)	33, 474, 631, 747, 753, 941
FauNDI	CATATG	1 cut(s)	951
FbaI	TGATCA	1 cut(s)	973
Fnu4HI	GCNGC	4 cut(s)	701, 709, 730, 774
FokI	GGATG	2 cut(s)	283, 876
FriOI	GRGCYC	4 cut(s)	33, 133, 622, 843
Fsp4HI	GCNGC	4 cut(s)	701, 709, 730, 774
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	4 cut(s)	701, 709, 730, 774
GsaI	CCCAGC	1 cut(s)	807
GsuI	CTGGAG	3 cut(s)	63, 636, 829
HaeIII	GGCC	2 cut(s)	349, 358
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	6 cut(s)	37, 478, 635, 751, 757, 945
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HinfI	GANTC	3 cut(s)	500, 593, 857
HpaI	GTTAAC	1 cut(s)	826
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	2 cut(s)	304, 950
Hpy166II	GTNNAC	1 cut(s)	826
Hpy188I	TCNGA	7 cut(s)	28, 93, 113, 235, 472, 781, 845
Hpy188III	TCNNGA	5 cut(s)	126, 174, 861, 884, 985
Hpy8I	GTNNAC	1 cut(s)	826
HpyAV	CCTTC	3 cut(s)	147, 334, 694
HpyCH4V	TGCA	5 cut(s)	557, 642, 872, 1011, 1024
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 355, 421, 430, 662, 697, 897, 946, 1021
HpyF3I	CTNAG	2 cut(s)	795, 983
Hsp92II	CATG	6 cut(s)	37, 478, 635, 751, 757, 945
Ksp22I	TGATCA	1 cut(s)	973
KspAI	GTTAAC	1 cut(s)	826
Kzo9I	GATC	5 cut(s)	88, 235, 880, 973, 987
LguI	GCTCTTC	1 cut(s)	422
LmnI	GCTCC	3 cut(s)	136, 617, 625
Lsp1109I	GCAGC	4 cut(s)	687, 695, 741, 785
LweI	GCATC	4 cut(s)	264, 651, 785, 854
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	3 cut(s)	11, 38, 425
MalI	GATC	5 cut(s)	90, 237, 882, 975, 989
MboI	GATC	5 cut(s)	88, 235, 880, 973, 987
MboII	GAAGA	8 cut(s)	132, 184, 213, 409, 509, 580, 890, 935
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	6 cut(s)	33, 133, 417, 622, 639, 843
MluCI	AATT	6 cut(s)	256, 281, 318, 366, 403, 789
MnlI	CCTC	6 cut(s)	133, 339, 476, 547, 971, 1014
MseI	TTAA	3 cut(s)	149, 197, 825
MslI	CAYNNNNRTG	2 cut(s)	269, 752
MspA1I	CMGCKG	1 cut(s)	807
MspCI	CTTAAG	1 cut(s)	196
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	4 cut(s)	81, 505, 615, 902
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	4 cut(s)	81, 505, 615, 902
MwoI	GCNNNNNNNGC	9 cut(s)	53, 355, 421, 430, 662, 697, 897, 946, 1021
NdeI	CATATG	1 cut(s)	951
NdeII	GATC	5 cut(s)	88, 235, 880, 973, 987
NlaIII	CATG	6 cut(s)	37, 478, 635, 751, 757, 945
NlaIV	GGNNCC	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	422
PctI	GAATGC	1 cut(s)	667
PfeI	GAWTC	3 cut(s)	500, 593, 857
PflMI	CCANNNNNTGG	1 cut(s)	267
PfoI	TCCNGGA	3 cut(s)	79, 503, 613
PkrI	GCNGC	4 cut(s)	702, 710, 731, 775
PpuMI	RGGWCCY	2 cut(s)	120, 534
Psp124BI	GAGCTC	3 cut(s)	133, 622, 843
Psp5II	RGGWCCY	2 cut(s)	120, 534
Psp6I	CCWGG	4 cut(s)	79, 503, 613, 900
PspFI	CCCAGC	1 cut(s)	803
PspGI	CCWGG	4 cut(s)	79, 503, 613, 900
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	4 cut(s)	120, 507, 534, 759
PspPPI	RGGWCCY	2 cut(s)	120, 534
PstI	CTGCAG	1 cut(s)	1026
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	807
RseI	CAYNNNNRTG	2 cut(s)	269, 752
SacI	GAGCTC	3 cut(s)	133, 622, 843
SapI	GCTCTTC	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	149, 197, 825
SatI	GCNGC	4 cut(s)	701, 709, 730, 774
Sau3AI	GATC	5 cut(s)	88, 235, 880, 973, 987
Sau96I	GGNCC	4 cut(s)	120, 507, 534, 759
ScrFI	CCNGG	4 cut(s)	81, 505, 615, 902
SduI	GDGCHC	6 cut(s)	33, 133, 417, 622, 639, 843
SfaNI	GCATC	4 cut(s)	264, 651, 785, 854
SfcI	CTRYAG	1 cut(s)	1022
SfiI	GGCCNNNNNGGCC	1 cut(s)	355
SinI	GGWCC	4 cut(s)	120, 507, 534, 759
SmiMI	CAYNNNNRTG	2 cut(s)	269, 752
SmlI	CTYRAG	4 cut(s)	196, 447, 542, 962
SmoI	CTYRAG	4 cut(s)	196, 447, 542, 962
Sse9I	AATT	6 cut(s)	256, 281, 318, 366, 403, 789
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	3 cut(s)	133, 622, 843
StyD4I	CCNGG	4 cut(s)	79, 503, 613, 900
TaqI	TCGA	1 cut(s)	591
TasI	AATT	6 cut(s)	256, 281, 318, 366, 403, 789
TfiI	GAWTC	3 cut(s)	500, 593, 857
Tru1I	TTAA	3 cut(s)	149, 197, 825
Tru9I	TTAA	3 cut(s)	149, 197, 825
TscAI	CASTG	3 cut(s)	58, 499, 983
TseI	GCWGC	4 cut(s)	700, 708, 729, 773
TspDTI	ATGAA	9 cut(s)	17, 51, 57, 132, 178, 536, 597, 764, 891
TspGWI	ACGGA	1 cut(s)	935
TspRI	CASTG	3 cut(s)	58, 499, 983
Van91I	CCANNNNNTGG	1 cut(s)	267
Vha464I	CTTAAG	1 cut(s)	196
VpaK11BI	GGWCC	4 cut(s)	120, 507, 534, 759
XapI	RAATTY	3 cut(s)	281, 366, 789
XbaI	TCTAGA	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	2 cut(s)	218, 322
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.