Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008375

Physical Location & Seq

Genomic Coordinates Reverse (-)

82103408 .. 82106278

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG519300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCATAGTACCCATTACCTTTTCCAACCAGAGTCAATGTGTAACTCTGCCAGTGCTGTTTCGTTTTCATCGAGTTCTCCAGGAGAGAATCGAATGGCTGTGAATGTGAGGACCAGGTCTTCTAGACCTCTTCCTTCTACATTCTTGATCAGAATGGCTATGAGGATATCTAGAGCAAGGTGGTTCACCTTCTTGAGAAGAGTGTTCCACTACCAAAATGGGTCAAGGTCTGATCTTGGATCGAACCCTTTTAATTCCAGCACTTGGATGATGATGGAGTTCATAGTTTTGGTCGTTCAGATAAGCATCACGACGATTATTCTGGCTGTTTCGGAGAGGGAGAAGCCGGTTTGGCCTATGAGAATTTGGATTGTTGGGTATGATATAGGCTGTGTTCTCAATTTGCTGCTACTATTTGGTCGTTACAGGCTACTTTATCTCACTCAAGCAGATGGTTTCAACCTTTCGGATATAGAACAACAAAGAGGCGTTGAAGAATCCAGGGCAACACATTTGATGAACAGGTGTAGAACCTCACTTGAGCTGTTCTTTGCAATATGGTTTGTAATGGGAAATGTTTGGGTGTTTGATTCTCGGTTTAGCTCATTCCCTGGAGCCCCAAAACTCCATGTGCTCTGCATTGCTCTGCTTGCTTGGAATGCAATCAGCTACTCTTTTCCATTCCTACTGTTTGTGTTGCTGTGTTGCTGTGTTCCTCTGATTAACAGCATGCTTGGATACAACATGAACATGGGCTCCATTGATAAAGCAGCATCTGATGACCAAATCTCTCAGCTACCTAGCTGGAGATATAAGGAAGTTAACACCTCCATAGAGCTGGGAAATGATCGCAACTCAGACCTCACAAATGAAGATCCAGTAAGCCACAACTTAAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

300

Amino Acids

34.35

Weight (kDa)

8.5

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55970 AT5G55970 AT5G55970
fragaria_vesca	FvH4_3g42300 FvH4_3g42300
malus_domestica	MD03G1034800.v1.1 MD11G1036700.v1.1
prunus_persica	Prupe.6G028000_v2.0.a1 Prupe.6G028000_v2.0.a1
pyrus_communis	pycom03g02700 pycom11g03040
rosa_chinensis	RchiOBHm_Chr5g0075651
rosa_laevigata	RLG00000036585
rosa_multiflora	Rmu_sc0001764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005940 Rroxscaffold_3G00219110
rosa_rugosa	Rorug05G0442000 Rorug05G0442100
rosa_samantha	Rh5AG498400 Rh5BG519300 Rh5CG542900 Rh5DG529900
rosa_wichuraiana	Rw5G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	264
AclWI	GGATC	2 cut(s)	247, 869
AcsI	RAATTY	1 cut(s)	363
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	264
AflII	CTTAAG	1 cut(s)	892
AgsI	TTSAA	2 cut(s)	460, 494
AjnI	CCWGG	4 cut(s)	79, 113, 500, 610
AloI	GAACNNNNNNTCC	2 cut(s)	740, 772
AluBI	AGCT	7 cut(s)	544, 603, 669, 796, 804, 838, 897
AluI	AGCT	7 cut(s)	544, 603, 669, 796, 804, 838, 897
Alw21I	GWGCWC	1 cut(s)	636
AlwI	GGATC	2 cut(s)	247, 869
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	406, 770
ApoI	RAATTY	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	111
BanII	GRGCYC	2 cut(s)	619, 758
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	636
BbvI	GCAGC	2 cut(s)	393, 782
BccI	CCATC	2 cut(s)	268, 446
BciT130I	CCWGG	4 cut(s)	81, 115, 502, 612
BciVI	GTATCC	1 cut(s)	731
BclI	TGATCA	1 cut(s)	147
BfaI	CTAG	3 cut(s)	123, 171, 801
BfrI	CTTAAG	1 cut(s)	892
BfuI	GTATCC	1 cut(s)	731
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	2 cut(s)	407, 771
BlsI	GCNGC	2 cut(s)	408, 772
Bme1390I	CCNGG	4 cut(s)	81, 115, 502, 612
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	2 cut(s)	616, 757
BmrFI	CCNGG	4 cut(s)	81, 115, 502, 612
BmsI	GCATC	2 cut(s)	315, 782
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	3 cut(s)	63, 633, 826
BpuEI	CTTGAG	3 cut(s)	214, 429, 560
BsaBI	GATNNNNATC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	501, 610
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	2 cut(s)	51, 878
Bse3DI	GCAATG	1 cut(s)	639
Bse8I	GATNNNNATC	1 cut(s)	305
BseBI	CCWGG	4 cut(s)	81, 115, 502, 612
BseDI	CCNNGG	2 cut(s)	501, 610
BseGI	GGATG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	806, 870
BseNI	ACTGG	2 cut(s)	51, 878
BseXI	GCAGC	2 cut(s)	393, 782
BseYI	CCCAGC	1 cut(s)	838
BshFI	GGCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	1 cut(s)	355
Bsp1286I	GDGCHC	3 cut(s)	619, 636, 758
Bsp143I	GATC	5 cut(s)	147, 232, 239, 847, 874
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	2 cut(s)	805, 869
BspLI	GGNNCC	2 cut(s)	616, 757
BspPI	GGATC	2 cut(s)	247, 869
BspTI	CTTAAG	1 cut(s)	892
BsrDI	GCAATG	1 cut(s)	639
BsrFI	RCCGGY	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	51, 878
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	501, 610
BssMI	GATC	5 cut(s)	147, 232, 239, 847, 874
Bst2UI	CCWGG	4 cut(s)	81, 115, 502, 612
Bst4CI	ACNGT	1 cut(s)	690
Bst6I	CTCTTC	2 cut(s)	135, 193
BstAFI	CTTAAG	1 cut(s)	892
BstC8I	GCNNGC	2 cut(s)	651, 731
BstDEI	CTNAG	2 cut(s)	792, 856
BstF5I	GGATG	1 cut(s)	273
BstKTI	GATC	5 cut(s)	150, 235, 242, 850, 877
BstMBI	GATC	5 cut(s)	147, 232, 239, 847, 874
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 650, 659
BstNI	CCWGG	4 cut(s)	81, 115, 502, 612
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	4 cut(s)	79, 113, 500, 610
BstV1I	GCAGC	2 cut(s)	393, 782
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	874
BstXI	CCANNNNNNTGG	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	874
BsuI	GTATCC	1 cut(s)	731
BsuRI	GGCC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	651, 731
CaiI	CAGNNNCTG	1 cut(s)	776
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	111
CsiI	ACCWGGT	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	4 cut(s)	629, 730, 745, 751
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	2 cut(s)	792, 856
DpnI	GATC	5 cut(s)	149, 234, 241, 849, 876
DpnII	GATC	5 cut(s)	147, 232, 239, 847, 874
Eam1104I	CTCTTC	2 cut(s)	135, 193
EarI	CTCTTC	2 cut(s)	135, 193
Eco24I	GRGCYC	2 cut(s)	619, 758
Eco32I	GATATC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	111
EcoRII	CCWGG	4 cut(s)	79, 113, 500, 610
EcoRV	GATATC	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	619, 758
FaeI	CATG	4 cut(s)	632, 733, 748, 754
FatI	CATG	4 cut(s)	628, 729, 744, 750
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	407, 771
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	2 cut(s)	619, 758
Fsp4HI	GCNGC	2 cut(s)	407, 771
FspBI	CTAG	3 cut(s)	123, 171, 801
GluI	GCNGC	2 cut(s)	407, 771
GsaI	CCCAGC	1 cut(s)	842
GsuI	CTGGAG	3 cut(s)	63, 633, 826
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	4 cut(s)	632, 733, 748, 754
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HindIII	AAGCTT	1 cut(s)	895
HinfI	GANTC	4 cut(s)	32, 88, 497, 590
HpaI	GTTAAC	1 cut(s)	823
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	186, 823
Hpy188I	TCNGA	8 cut(s)	152, 232, 300, 334, 469, 720, 778, 859
Hpy188III	TCNNGA	5 cut(s)	123, 145, 171, 193, 310
Hpy8I	GTNNAC	2 cut(s)	186, 823
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	144, 199
HpyCH4III	ACNGT	1 cut(s)	690
HpyCH4V	TGCA	4 cut(s)	4, 554, 639, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 650, 659
HpyF3I	CTNAG	2 cut(s)	792, 856
Hsp92II	CATG	4 cut(s)	632, 733, 748, 754
Ksp22I	TGATCA	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	823
Kzo9I	GATC	5 cut(s)	147, 232, 239, 847, 874
LmnI	GCTCC	2 cut(s)	614, 761
Lsp1109I	GCAGC	2 cut(s)	393, 782
LweI	GCATC	2 cut(s)	315, 782
MabI	ACCWGGT	1 cut(s)	113
MaeI	CTAG	3 cut(s)	123, 171, 801
MaeIII	GTNAC	2 cut(s)	41, 422
MalI	GATC	5 cut(s)	149, 234, 241, 849, 876
MboI	GATC	5 cut(s)	147, 232, 239, 847, 874
MboII	GAAGA	5 cut(s)	111, 122, 210, 506, 884
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	3 cut(s)	619, 636, 758
MluCI	AATT	3 cut(s)	253, 363, 400
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	9 cut(s)	102, 138, 156, 330, 479, 544, 726, 838, 872
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	252, 723, 822, 893
MslI	CAYNNNNRTG	2 cut(s)	266, 749
MspCI	CTTAAG	1 cut(s)	892
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	4 cut(s)	81, 115, 502, 612
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	4 cut(s)	81, 115, 502, 612
MwoI	GCNNNNNNNGC	3 cut(s)	352, 650, 659
NdeII	GATC	5 cut(s)	147, 232, 239, 847, 874
NlaIII	CATG	4 cut(s)	632, 733, 748, 754
NlaIV	GGNNCC	2 cut(s)	616, 757
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	733
PaeI	GCATGC	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	3 cut(s)	88, 497, 590
PflFI	GACNNNGTC	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	264
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	408, 772
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	4 cut(s)	79, 113, 500, 610
PspFI	CCCAGC	1 cut(s)	838
PspGI	CCWGG	4 cut(s)	79, 113, 500, 610
PspN4I	GGNNCC	2 cut(s)	616, 757
PspPI	GGNCC	1 cut(s)	111
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	1 cut(s)	874
PsyI	GACNNNGTC	1 cut(s)	115
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	2 cut(s)	266, 749
SaqAI	TTAA	4 cut(s)	252, 723, 822, 893
SatI	GCNGC	2 cut(s)	407, 771
Sau3AI	GATC	5 cut(s)	147, 232, 239, 847, 874
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	4 cut(s)	81, 115, 502, 612
SduI	GDGCHC	3 cut(s)	619, 636, 758
SexAI	ACCWGGT	1 cut(s)	113
SfaNI	GCATC	2 cut(s)	315, 782
SinI	GGWCC	1 cut(s)	111
SmiMI	CAYNNNNRTG	2 cut(s)	266, 749
SmlI	CTYRAG	4 cut(s)	193, 444, 539, 892
SmoI	CTYRAG	4 cut(s)	193, 444, 539, 892
SphI	GCATGC	1 cut(s)	733
Sse9I	AATT	3 cut(s)	253, 363, 400
SspMI	CTAG	3 cut(s)	123, 171, 801
StyD4I	CCNGG	4 cut(s)	79, 113, 500, 610
TaaI	ACNGT	1 cut(s)	690
TaqI	TCGA	3 cut(s)	71, 91, 242
TasI	AATT	3 cut(s)	253, 363, 400
TfiI	GAWTC	3 cut(s)	88, 497, 590
Tru1I	TTAA	4 cut(s)	252, 723, 822, 893
Tru9I	TTAA	4 cut(s)	252, 723, 822, 893
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	2 cut(s)	406, 770
TspDTI	ATGAA	5 cut(s)	57, 271, 533, 761, 885
TspRI	CASTG	1 cut(s)	58
Tth111I	GACNNNGTC	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	264
Vha464I	CTTAAG	1 cut(s)	892
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	1 cut(s)	363
XbaI	TCTAGA	2 cut(s)	122, 170
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XspI	CTAG	3 cut(s)	123, 171, 801
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.