Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008375

Physical Location & Seq

Genomic Coordinates Reverse (-)

82129992 .. 82132417

Gene Structure 2426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036585

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCATAGTACCCATTACCTTTTCCAACCAGATTCAATGTGTAACTCTGCCAGTGCTGTTTCGTTTTCAACGAGTTCTCCAGGAGAGAATCGAATGGCTGTGAATGTGAGGACCAGGTCTTCTAGACCTCTTCCTTCTACATTCTTGATCAGAATGGCTATGAGGATATCTAGAGCAAGGTGGTTCACCTTCTTGAGAAGAGTGTTCCACTACCAAAATGGGTCAAGGTCTGATCTTGGATCGAACCCTTTTAATTCCAGCACTTGGATGATGATGGAGTTCATAGTTTTGGTCGTTCAGATAAGCATGACGACGATTATTCTGGCTGTTTCGGAGAGGGAGAAGCCGGTTTGGCCTATGAGAATTTGGATTGTTGGGTATGATATAGGCTGTGTTCTCAATTTGCTGCTACTATTTGGTCGTTACAGGCTACTTTATCTCACTCAAGCAGATGGTTTGAACCTTTCGGATATAGAACAACAAAGAGGCGTTGAAGAATCCAGGACAACACATTTGATGAACAGGTGTAGAACCTCACTTGAGCTGTTCTTTGCAATATGGTTTGTAATGGGTAATGTTTGGGTGTTTGATTCTCGGTTTAGCTCATTCCCTGGAGCCCCAAAACTCCATGTGCTCTGCATTGCTCTGCTTGCTTGGAATGCAATCAGCTACTCTTTTCCATTCCTACTGTTTGTGTTGCTGTGTTGCTGTGTTCCTCTAATTAACAGCATGCTTGGATACAACATGAACATGGGCTCCATTGATAAAGCAGCATCTGATGACCAAATCTCTCAGCTACCTAGCTGGAGATATAAGGAAGTTAACACCTCCATAGAGCTGGGAAATGATCGCAACTCAGACCTCACAAATGAAGATCCAGACTGCTGCATTTGCCTGGCCAAATATAGGGACAGAGAAGAAGTGAGGCAGTTGCCATGTTCGCATATGTTTCACCTCAAGTGTGTCGATCAGTGGCTTCGGATCATATCTTGCTGCCCTCTTTGCAAGCAAGAACTGCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

342

Amino Acids

39.38

Weight (kDa)

8.49

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	294 - 336	3.2e-12	Ring finger domain
zf-RING_11	PF17123	294 - 322	8e-11	RING-like zinc finger
zf-rbx1	PF12678	295 - 336	6.2e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55970 AT5G55970 AT5G55970
fragaria_vesca	FvH4_3g42300 FvH4_3g42300
malus_domestica	MD03G1034800.v1.1 MD11G1036700.v1.1
prunus_persica	Prupe.6G028000_v2.0.a1 Prupe.6G028000_v2.0.a1
pyrus_communis	pycom03g02700 pycom11g03040
rosa_chinensis	RchiOBHm_Chr5g0075651
rosa_laevigata	RLG00000036585
rosa_multiflora	Rmu_sc0001764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005940 Rroxscaffold_3G00219110
rosa_rugosa	Rorug05G0442000 Rorug05G0442100
rosa_samantha	Rh5AG498400 Rh5BG519300 Rh5CG542900 Rh5DG529900
rosa_wichuraiana	Rw5G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	264
AclWI	GGATC	3 cut(s)	247, 869, 989
AcoI	YGGCCR	1 cut(s)	897
AcsI	RAATTY	1 cut(s)	363
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	264, 906
AgsI	TTSAA	4 cut(s)	36, 69, 460, 494
AjnI	CCWGG	5 cut(s)	79, 113, 500, 610, 894
AloI	GAACNNNNNNTCC	2 cut(s)	740, 772
AluBI	AGCT	6 cut(s)	544, 603, 669, 796, 804, 838
AluI	AGCT	6 cut(s)	544, 603, 669, 796, 804, 838
Alw21I	GWGCWC	1 cut(s)	636
AlwI	GGATC	3 cut(s)	247, 869, 989
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	2 cut(s)	353, 897
ApeKI	GCWGC	4 cut(s)	406, 770, 885, 993
ApoI	RAATTY	1 cut(s)	363
ArsI	GACNNNNNNTTYG	2 cut(s)	496, 528
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	178, 944
AvaII	GGWCC	1 cut(s)	111
BalI	TGGCCA	1 cut(s)	899
BanII	GRGCYC	2 cut(s)	619, 758
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	636
BbvI	GCAGC	4 cut(s)	393, 782, 872, 980
BccI	CCATC	2 cut(s)	268, 446
BciT130I	CCWGG	5 cut(s)	81, 115, 502, 612, 896
BciVI	GTATCC	1 cut(s)	731
BclI	TGATCA	1 cut(s)	147
BfaI	CTAG	3 cut(s)	123, 171, 801
BfmI	CTRYAG	1 cut(s)	1016
BfuI	GTATCC	1 cut(s)	731
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	4 cut(s)	407, 771, 886, 994
BlsI	GCNGC	4 cut(s)	408, 772, 887, 995
Bme1390I	CCNGG	5 cut(s)	81, 115, 502, 612, 896
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	2 cut(s)	616, 757
BmrFI	CCNGG	5 cut(s)	81, 115, 502, 612, 896
BmsI	GCATC	1 cut(s)	782
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	3 cut(s)	63, 633, 826
BpuEI	CTTGAG	4 cut(s)	214, 429, 560, 941
BsaJI	CCNNGG	1 cut(s)	610
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 740, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 906
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	639
BseBI	CCWGG	5 cut(s)	81, 115, 502, 612, 896
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	264, 906
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	806, 870
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	4 cut(s)	393, 782, 872, 980
BseYI	CCCAGC	1 cut(s)	838
BshFI	GGCC	2 cut(s)	355, 899
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	923
BslI	CCNNNNNNNGG	2 cut(s)	264, 906
BsmFI	GGGAC	1 cut(s)	923
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	2 cut(s)	355, 899
Bsp1286I	GDGCHC	3 cut(s)	619, 636, 758
Bsp143I	GATC	7 cut(s)	147, 232, 239, 847, 874, 967, 981
BspANI	GGCC	2 cut(s)	355, 899
BspCNI	CTCAG	2 cut(s)	805, 869
BspLI	GGNNCC	2 cut(s)	616, 757
BspMAI	CTGCAG	1 cut(s)	1020
BspPI	GGATC	3 cut(s)	247, 869, 989
BsrDI	GCAATG	1 cut(s)	639
BsrFI	RCCGGY	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	7 cut(s)	147, 232, 239, 847, 874, 967, 981
Bst2UI	CCWGG	5 cut(s)	81, 115, 502, 612, 896
Bst4CI	ACNGT	1 cut(s)	690
Bst6I	CTCTTC	2 cut(s)	135, 193
BstAPI	GCANNNNNTGC	1 cut(s)	1015
BstC8I	GCNNGC	3 cut(s)	651, 731, 1007
BstDEI	CTNAG	2 cut(s)	792, 856
BstF5I	GGATG	1 cut(s)	273
BstKTI	GATC	7 cut(s)	150, 235, 242, 850, 877, 970, 984
BstMBI	GATC	7 cut(s)	147, 232, 239, 847, 874, 967, 981
BstMWI	GCNNNNNNNGC	7 cut(s)	352, 650, 659, 891, 940, 1002, 1015
BstNI	CCWGG	5 cut(s)	81, 115, 502, 612, 896
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	5 cut(s)	79, 113, 500, 610, 894
BstSFI	CTRYAG	1 cut(s)	1016
BstV1I	GCAGC	4 cut(s)	393, 782, 872, 980
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	874
BstXI	CCANNNNNNTGG	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	874
BsuI	GTATCC	1 cut(s)	731
BsuRI	GGCC	2 cut(s)	355, 899
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	2 cut(s)	58, 977
Cac8I	GCNNGC	3 cut(s)	651, 731, 1007
CaiI	CAGNNNCTG	1 cut(s)	776
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	111
CsiI	ACCWGGT	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	6 cut(s)	307, 629, 730, 745, 751, 936
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	2 cut(s)	792, 856
DpnI	GATC	7 cut(s)	149, 234, 241, 849, 876, 969, 983
DpnII	GATC	7 cut(s)	147, 232, 239, 847, 874, 967, 981
EaeI	YGGCCR	1 cut(s)	897
Eam1104I	CTCTTC	2 cut(s)	135, 193
EarI	CTCTTC	2 cut(s)	135, 193
Eco24I	GRGCYC	2 cut(s)	619, 758
Eco32I	GATATC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	111
EcoRII	CCWGG	5 cut(s)	79, 113, 500, 610, 894
EcoRV	GATATC	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	619, 758
FaeI	CATG	6 cut(s)	310, 632, 733, 748, 754, 939
FaqI	GGGAC	1 cut(s)	923
FatI	CATG	6 cut(s)	306, 628, 729, 744, 750, 935
FauNDI	CATATG	1 cut(s)	945
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	407, 771, 886, 994
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	2 cut(s)	619, 758
Fsp4HI	GCNGC	4 cut(s)	407, 771, 886, 994
FspBI	CTAG	3 cut(s)	123, 171, 801
GluI	GCNGC	4 cut(s)	407, 771, 886, 994
GsaI	CCCAGC	1 cut(s)	842
GsuI	CTGGAG	3 cut(s)	63, 633, 826
HaeIII	GGCC	2 cut(s)	355, 899
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	6 cut(s)	310, 632, 733, 748, 754, 939
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HinfI	GANTC	4 cut(s)	32, 88, 497, 590
HpaI	GTTAAC	1 cut(s)	823
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	2 cut(s)	178, 944
Hpy166II	GTNNAC	2 cut(s)	186, 823
Hpy188I	TCNGA	8 cut(s)	152, 232, 300, 334, 469, 778, 859, 981
Hpy188III	TCNNGA	5 cut(s)	123, 145, 171, 193, 878
Hpy8I	GTNNAC	2 cut(s)	186, 823
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	144, 199
HpyCH4III	ACNGT	1 cut(s)	690
HpyCH4V	TGCA	7 cut(s)	4, 554, 639, 662, 888, 1005, 1018
HpyF10VI	GCNNNNNNNGC	7 cut(s)	352, 650, 659, 891, 940, 1002, 1015
HpyF3I	CTNAG	2 cut(s)	792, 856
Hsp92II	CATG	6 cut(s)	310, 632, 733, 748, 754, 939
Ksp22I	TGATCA	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	823
Kzo9I	GATC	7 cut(s)	147, 232, 239, 847, 874, 967, 981
LmnI	GCTCC	2 cut(s)	614, 761
Lsp1109I	GCAGC	4 cut(s)	393, 782, 872, 980
LweI	GCATC	1 cut(s)	782
MabI	ACCWGGT	1 cut(s)	113
MaeI	CTAG	3 cut(s)	123, 171, 801
MaeIII	GTNAC	2 cut(s)	41, 422
MalI	GATC	7 cut(s)	149, 234, 241, 849, 876, 969, 983
MboI	GATC	7 cut(s)	147, 232, 239, 847, 874, 967, 981
MboII	GAAGA	6 cut(s)	111, 122, 210, 506, 884, 929
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	3 cut(s)	619, 636, 758
MlsI	TGGCCA	1 cut(s)	899
MluCI	AATT	4 cut(s)	253, 363, 400, 720
MluNI	TGGCCA	1 cut(s)	899
MmeI	TCCRAC	1 cut(s)	49
Mox20I	TGGCCA	1 cut(s)	899
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	899
MseI	TTAA	3 cut(s)	252, 723, 822
MslI	CAYNNNNRTG	2 cut(s)	266, 749
Msp20I	TGGCCA	1 cut(s)	899
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	5 cut(s)	81, 115, 502, 612, 896
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	5 cut(s)	81, 115, 502, 612, 896
MwoI	GCNNNNNNNGC	7 cut(s)	352, 650, 659, 891, 940, 1002, 1015
NdeI	CATATG	1 cut(s)	945
NdeII	GATC	7 cut(s)	147, 232, 239, 847, 874, 967, 981
NlaIII	CATG	6 cut(s)	310, 632, 733, 748, 754, 939
NlaIV	GGNNCC	2 cut(s)	616, 757
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	733
PaeI	GCATGC	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	4 cut(s)	32, 88, 497, 590
PflFI	GACNNNGTC	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	264
PfoI	TCCNGGA	2 cut(s)	79, 500
PkrI	GCNGC	4 cut(s)	408, 772, 887, 995
Psp6I	CCWGG	5 cut(s)	79, 113, 500, 610, 894
PspFI	CCCAGC	1 cut(s)	838
PspGI	CCWGG	5 cut(s)	79, 113, 500, 610, 894
PspN4I	GGNNCC	2 cut(s)	616, 757
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	1020
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	1 cut(s)	874
PsyI	GACNNNGTC	1 cut(s)	115
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	2 cut(s)	266, 749
SaqAI	TTAA	3 cut(s)	252, 723, 822
SatI	GCNGC	4 cut(s)	407, 771, 886, 994
Sau3AI	GATC	7 cut(s)	147, 232, 239, 847, 874, 967, 981
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	5 cut(s)	81, 115, 502, 612, 896
SduI	GDGCHC	3 cut(s)	619, 636, 758
SexAI	ACCWGGT	1 cut(s)	113
SfaNI	GCATC	1 cut(s)	782
SfcI	CTRYAG	1 cut(s)	1016
SinI	GGWCC	1 cut(s)	111
SmiMI	CAYNNNNRTG	2 cut(s)	266, 749
SmlI	CTYRAG	4 cut(s)	193, 444, 539, 956
SmoI	CTYRAG	4 cut(s)	193, 444, 539, 956
SphI	GCATGC	1 cut(s)	733
Sse9I	AATT	4 cut(s)	253, 363, 400, 720
SspMI	CTAG	3 cut(s)	123, 171, 801
StyD4I	CCNGG	5 cut(s)	79, 113, 500, 610, 894
TaaI	ACNGT	1 cut(s)	690
TaqI	TCGA	3 cut(s)	91, 242, 966
TasI	AATT	4 cut(s)	253, 363, 400, 720
TfiI	GAWTC	4 cut(s)	32, 88, 497, 590
Tru1I	TTAA	3 cut(s)	252, 723, 822
Tru9I	TTAA	3 cut(s)	252, 723, 822
TscAI	CASTG	2 cut(s)	58, 977
TseI	GCWGC	4 cut(s)	406, 770, 885, 993
TspDTI	ATGAA	4 cut(s)	271, 533, 761, 885
TspRI	CASTG	2 cut(s)	58, 977
Tth111I	GACNNNGTC	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	1 cut(s)	363
XbaI	TCTAGA	2 cut(s)	122, 170
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XspI	CTAG	3 cut(s)	123, 171, 801
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.