Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008375

Physical Location & Seq

Genomic Coordinates Reverse (-)

35294323 .. 35297221

Gene Structure 2899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42300.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTGCAACTCTGGCAGTGCTGTTTCGAATTCATCGAGTTCTGCAGGCGAGAATCAAATGGCTGTGAATGGGAGGAGCAGGTCTTCTAGACCTCTTCCTTCTACATTCTTGATGAGAATGGCTATGAGGATATCTAGAGCAAGGTGGTTCACCTTCTTGAGAAGAGTGTTCCATTACCAAAATGGGTCAAGGTCTGATCTTGGATCCAACCCTTTTAACTCCACCACTTGGATGACGCTGGAGTTCATAGCTTTGGTTGTTCAGATAAGCATCACGACAATTACTCTGGCTGTTTCGGAGAGGGAGAAGCCGGTTTGGCCTATGAGGATTTGGATTGTTGGGTATGATATAGGCTGTATTCTCAATTTGCTGCTACTGTTTGGTCGTTACAGACTACTGTATCTAACTCAAGGAGATGGTTTCAACATTTCGGATTTAGAACAACAAAGAGGCGTTGAAGAATCCAGGACAACACATTTGATGACCAAGTGTAGAACCTCACTTGAGCTGTTCTTTGCAATATGGTTTGTGATGGGTAATGTTTGGGTGTTTGATTCTCGGTTTAATTCATTCCCTGGTGCCCCGAAACTCCATGTGCTCTGCATTGTTCTGCTTGCTTGGAATGCAATCAGCTACTCGTTTCCATTCCTACTGTTTGTGTTACTGTGTTGCTGTGTTCCCCTAATTAGCAGCATGCTCGGATACAACATGAACATGGGCTCCATTGATAAAGCAGCATCCGATGACCAAATTTCTCAGCTCCCCAGCTGGAGATATAAGGAAGTTAACACCACAGTAGATTTCAGAAGTGATGGCAATTCAGACCTTGTAAATGAAGATCCAGACTGCTGCATTTGCCTGGCCAAGTATAGGGACAAAGAAGAAGTGAGGCAGTTGCCATGTTCGCATATGTTTCACCTCAAGTGTGTCGATCAGTGGCTTCGGATCATATCTTGCTGCCCTCTTTGTAAGCAAGAACTGCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

330

Amino Acids

37.67

Weight (kDa)

8.49

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	282 - 324	2.7e-12	Ring finger domain
zf-RING_11	PF17123	282 - 310	5.4e-11	RING-like zinc finger
zf-rbx1	PF12678	282 - 324	4.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55970 AT5G55970 AT5G55970
fragaria_vesca	FvH4_3g42300 FvH4_3g42300
malus_domestica	MD03G1034800.v1.1 MD11G1036700.v1.1
prunus_persica	Prupe.6G028000_v2.0.a1 Prupe.6G028000_v2.0.a1
pyrus_communis	pycom03g02700 pycom11g03040
rosa_chinensis	RchiOBHm_Chr5g0075651
rosa_laevigata	RLG00000036585
rosa_multiflora	Rmu_sc0001764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005940 Rroxscaffold_3G00219110
rosa_rugosa	Rorug05G0442000 Rorug05G0442100
rosa_samantha	Rh5AG498400 Rh5BG519300 Rh5CG542900 Rh5DG529900
rosa_wichuraiana	Rw5G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	578
AccB7I	CCANNNNNTGG	1 cut(s)	228
AclWI	GGATC	4 cut(s)	198, 211, 833, 953
AcoI	YGGCCR	1 cut(s)	861
AcsI	RAATTY	2 cut(s)	28, 750
AfiI	CCNNNNNNNGG	2 cut(s)	228, 870
AgsI	TTSAA	2 cut(s)	424, 458
AjnI	CCWGG	3 cut(s)	464, 574, 858
AloI	GAACNNNNNNTCC	2 cut(s)	704, 736
AluBI	AGCT	5 cut(s)	251, 508, 633, 760, 768
AluI	AGCT	5 cut(s)	251, 508, 633, 760, 768
Alw21I	GWGCWC	1 cut(s)	600
AlwI	GGATC	4 cut(s)	198, 211, 833, 953
AoxI	GGCC	2 cut(s)	317, 861
ApeKI	GCWGC	5 cut(s)	370, 690, 734, 849, 957
ApoI	RAATTY	2 cut(s)	28, 750
ArsI	GACNNNNNNTTYG	2 cut(s)	460, 492
AsuHPI	GGTGA	2 cut(s)	142, 908
AsuII	TTCGAA	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	583
BaeI	ACNNNNGTAYC	2 cut(s)	383, 416
BalI	TGGCCA	1 cut(s)	863
BamHI	GGATCC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	578
BanII	GRGCYC	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	5 cut(s)	357, 702, 746, 836, 944
BccI	CCATC	3 cut(s)	410, 526, 806
BcgI	CGANNNNNNTGC	2 cut(s)	679, 713
BciT130I	CCWGG	3 cut(s)	466, 576, 860
BciVI	GTATCC	1 cut(s)	695
BfaI	CTAG	2 cut(s)	87, 135
BfmI	CTRYAG	2 cut(s)	42, 980
BfuAI	ACCTGC	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	695
BglI	GCCNNNNNGGC	1 cut(s)	316
BisI	GCNGC	5 cut(s)	371, 691, 735, 850, 958
BlsI	GCNGC	5 cut(s)	372, 692, 736, 851, 959
Bme1390I	CCNGG	3 cut(s)	466, 576, 860
BmiI	GGNNCC	3 cut(s)	205, 580, 721
BmrFI	CCNGG	3 cut(s)	466, 576, 860
BmsI	GCATC	2 cut(s)	279, 746
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	2 cut(s)	260, 790
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	4 cut(s)	178, 393, 524, 905
BsaBI	GATNNNNATC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	574
BsaXI	ACNNNNNCTCC	2 cut(s)	704, 734
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 870
Bse118I	RCCGGY	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	269
BseBI	CCWGG	3 cut(s)	466, 576, 860
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	2 cut(s)	237, 737
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	2 cut(s)	228, 870
BseMII	CTCAG	1 cut(s)	770
BseRI	GAGGAG	1 cut(s)	88
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	5 cut(s)	357, 702, 746, 836, 944
BseYI	CCCAGC	1 cut(s)	764
BshFI	GGCC	2 cut(s)	319, 863
BshNI	GGYRCC	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	600
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	887
BslI	CCNNNNNNNGG	2 cut(s)	228, 870
BsmFI	GGGAC	1 cut(s)	887
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	319, 863
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	3 cut(s)	583, 600, 722
Bsp143I	GATC	5 cut(s)	196, 203, 838, 931, 945
BspANI	GGCC	2 cut(s)	319, 863
BspCNI	CTCAG	1 cut(s)	769
BspLI	GGNNCC	3 cut(s)	205, 580, 721
BspMAI	CTGCAG	2 cut(s)	46, 984
BspMI	ACCTGC	1 cut(s)	69
BspPI	GGATC	4 cut(s)	198, 211, 833, 953
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	5 cut(s)	196, 203, 838, 931, 945
Bst2UI	CCWGG	3 cut(s)	466, 576, 860
Bst4CI	ACNGT	5 cut(s)	378, 399, 654, 666, 796
Bst6I	CTCTTC	2 cut(s)	99, 157
BstAPI	GCANNNNNTGC	1 cut(s)	979
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	46, 615, 695
BstDEI	CTNAG	1 cut(s)	756
BstF5I	GGATG	2 cut(s)	237, 737
BstKTI	GATC	5 cut(s)	199, 206, 841, 934, 948
BstMBI	GATC	5 cut(s)	196, 203, 838, 931, 945
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 316, 623, 855, 904, 979
BstNI	CCWGG	3 cut(s)	466, 576, 860
BstNSI	RCATGY	1 cut(s)	697
BstSCI	CCNGG	3 cut(s)	464, 574, 858
BstSFI	CTRYAG	2 cut(s)	42, 980
BstSLI	GKGCMC	1 cut(s)	583
BstV1I	GCAGC	5 cut(s)	357, 702, 746, 836, 944
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	203, 838
BstYI	RGATCY	2 cut(s)	203, 838
BsuI	GTATCC	1 cut(s)	695
BsuRI	GGCC	2 cut(s)	319, 863
BtsCI	GGATG	2 cut(s)	237, 737
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	22, 941
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	3 cut(s)	46, 615, 695
Cfr10I	RCCGGY	1 cut(s)	310
CseI	GACGC	1 cut(s)	244
CviAII	CATG	5 cut(s)	593, 694, 709, 715, 900
DdeI	CTNAG	1 cut(s)	756
DpnI	GATC	5 cut(s)	198, 205, 840, 933, 947
DpnII	GATC	5 cut(s)	196, 203, 838, 931, 945
EaeI	YGGCCR	1 cut(s)	861
Eam1104I	CTCTTC	2 cut(s)	99, 157
EarI	CTCTTC	2 cut(s)	99, 157
Eco24I	GRGCYC	1 cut(s)	722
Eco32I	GATATC	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	3 cut(s)	464, 574, 858
EcoRV	GATATC	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	722
FaeI	CATG	5 cut(s)	596, 697, 712, 718, 903
FaqI	GGGAC	1 cut(s)	887
FatI	CATG	5 cut(s)	592, 693, 708, 714, 899
FauNDI	CATATG	1 cut(s)	909
Fnu4HI	GCNGC	5 cut(s)	371, 691, 735, 850, 958
FokI	GGATG	2 cut(s)	244, 724
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	5 cut(s)	371, 691, 735, 850, 958
FspBI	CTAG	2 cut(s)	87, 135
GluI	GCNGC	5 cut(s)	371, 691, 735, 850, 958
GsaI	CCCAGC	1 cut(s)	768
GsuI	CTGGAG	2 cut(s)	260, 790
HaeIII	GGCC	2 cut(s)	319, 863
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	244
Hin1II	CATG	5 cut(s)	596, 697, 712, 718, 903
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HinfI	GANTC	3 cut(s)	52, 461, 554
HpaI	GTTAAC	1 cut(s)	787
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	2 cut(s)	142, 908
Hpy166II	GTNNAC	2 cut(s)	150, 787
Hpy188I	TCNGA	9 cut(s)	196, 264, 298, 433, 701, 742, 806, 823, 945
Hpy188III	TCNNGA	6 cut(s)	87, 109, 135, 157, 274, 842
Hpy8I	GTNNAC	2 cut(s)	150, 787
HpyAV	CCTTC	2 cut(s)	108, 163
HpyCH4III	ACNGT	5 cut(s)	378, 399, 654, 666, 796
HpyCH4V	TGCA	7 cut(s)	6, 44, 518, 603, 626, 852, 982
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 316, 623, 855, 904, 979
HpyF3I	CTNAG	1 cut(s)	756
Hsp92II	CATG	5 cut(s)	596, 697, 712, 718, 903
KspAI	GTTAAC	1 cut(s)	787
Kzo9I	GATC	5 cut(s)	196, 203, 838, 931, 945
LmnI	GCTCC	3 cut(s)	75, 725, 765
Lsp1109I	GCAGC	5 cut(s)	357, 702, 746, 836, 944
LweI	GCATC	2 cut(s)	279, 746
MaeI	CTAG	2 cut(s)	87, 135
MaeIII	GTNAC	2 cut(s)	386, 660
MalI	GATC	5 cut(s)	198, 205, 840, 933, 947
MboI	GATC	5 cut(s)	196, 203, 838, 931, 945
MboII	GAAGA	6 cut(s)	75, 86, 174, 470, 848, 893
MflI	RGATCY	2 cut(s)	203, 838
MhlI	GDGCHC	3 cut(s)	583, 600, 722
MlsI	TGGCCA	1 cut(s)	863
MluCI	AATT	7 cut(s)	28, 279, 364, 565, 684, 750, 817
MluNI	TGGCCA	1 cut(s)	863
MmeI	TCCRAC	1 cut(s)	231
Mox20I	TGGCCA	1 cut(s)	863
MscI	TGGCCA	1 cut(s)	863
MseI	TTAA	3 cut(s)	216, 564, 786
MslI	CAYNNNNRTG	2 cut(s)	230, 713
Msp20I	TGGCCA	1 cut(s)	863
MspA1I	CMGCKG	1 cut(s)	768
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	3 cut(s)	466, 576, 860
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	3 cut(s)	466, 576, 860
MwoI	GCNNNNNNNGC	6 cut(s)	12, 316, 623, 855, 904, 979
NdeI	CATATG	1 cut(s)	909
NdeII	GATC	5 cut(s)	196, 203, 838, 931, 945
NlaIII	CATG	5 cut(s)	596, 697, 712, 718, 903
NlaIV	GGNNCC	3 cut(s)	205, 580, 721
NspI	RCATGY	1 cut(s)	697
NspV	TTCGAA	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	3 cut(s)	52, 461, 554
PflMI	CCANNNNNTGG	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	464
PkrI	GCNGC	5 cut(s)	372, 692, 736, 851, 959
Psp6I	CCWGG	3 cut(s)	464, 574, 858
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	3 cut(s)	464, 574, 858
PspN4I	GGNNCC	3 cut(s)	205, 580, 721
PstI	CTGCAG	2 cut(s)	46, 984
PsuI	RGATCY	2 cut(s)	203, 838
PvuII	CAGCTG	1 cut(s)	768
RseI	CAYNNNNRTG	2 cut(s)	230, 713
SaqAI	TTAA	3 cut(s)	216, 564, 786
SatI	GCNGC	5 cut(s)	371, 691, 735, 850, 958
Sau3AI	GATC	5 cut(s)	196, 203, 838, 931, 945
ScrFI	CCNGG	3 cut(s)	466, 576, 860
SduI	GDGCHC	3 cut(s)	583, 600, 722
SfaNI	GCATC	2 cut(s)	279, 746
SfcI	CTRYAG	2 cut(s)	42, 980
SfuI	TTCGAA	1 cut(s)	26
SmiMI	CAYNNNNRTG	2 cut(s)	230, 713
SmlI	CTYRAG	4 cut(s)	157, 408, 503, 920
SmoI	CTYRAG	4 cut(s)	157, 408, 503, 920
SphI	GCATGC	1 cut(s)	697
Sse9I	AATT	7 cut(s)	28, 279, 364, 565, 684, 750, 817
SspMI	CTAG	2 cut(s)	87, 135
StyD4I	CCNGG	3 cut(s)	464, 574, 858
TaaI	ACNGT	5 cut(s)	378, 399, 654, 666, 796
TaqI	TCGA	3 cut(s)	26, 35, 930
TasI	AATT	7 cut(s)	28, 279, 364, 565, 684, 750, 817
TfiI	GAWTC	3 cut(s)	52, 461, 554
Tru1I	TTAA	3 cut(s)	216, 564, 786
Tru9I	TTAA	3 cut(s)	216, 564, 786
TscAI	CASTG	2 cut(s)	22, 941
TseI	GCWGC	5 cut(s)	370, 690, 734, 849, 957
TspDTI	ATGAA	5 cut(s)	21, 235, 558, 725, 849
TspRI	CASTG	2 cut(s)	22, 941
Van91I	CCANNNNNTGG	1 cut(s)	228
XapI	RAATTY	2 cut(s)	28, 750
XbaI	TCTAGA	2 cut(s)	86, 134
XceI	RCATGY	1 cut(s)	697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XspI	CTAG	2 cut(s)	87, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.