E3 ubiquitin-protein ligase At4g11680-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55970 AT5G55970 AT5G55970 |
| fragaria_vesca | FvH4_3g42300 FvH4_3g42300 |
| malus_domestica | MD03G1034800.v1.1 MD11G1036700.v1.1 |
| prunus_persica | Prupe.6G028000_v2.0.a1 Prupe.6G028000_v2.0.a1 |
| pyrus_communis | pycom03g02700 pycom11g03040 |
| rosa_chinensis | RchiOBHm_Chr5g0075651 |
| rosa_laevigata | RLG00000036585 |
| rosa_multiflora | Rmu_sc0001764.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00005940 Rroxscaffold_3G00219110 |
| rosa_rugosa | Rorug05G0442000 Rorug05G0442100 |
| rosa_samantha | Rh5AG498400 Rh5BG519300 Rh5CG542900 Rh5DG529900 |
| rosa_wichuraiana | Rw5G046220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 11, 341 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AflIII | ACRYGT | 1 cut(s) | 124 |
| AgeI | ACCGGT | 1 cut(s) | 149 |
| AgsI | TTSAA | 2 cut(s) | 122, 135 |
| AluBI | AGCT | 1 cut(s) | 115 |
| AluI | AGCT | 1 cut(s) | 115 |
| Alw26I | GTCTC | 1 cut(s) | 97 |
| AlwI | GGATC | 2 cut(s) | 11, 341 |
| AseI | ATTAAT | 1 cut(s) | 84 |
| AsiGI | ACCGGT | 1 cut(s) | 149 |
| AspS9I | GGNCC | 1 cut(s) | 207 |
| AsuHPI | GGTGA | 1 cut(s) | 274 |
| AvaII | GGWCC | 1 cut(s) | 207 |
| BcoDI | GTCTC | 1 cut(s) | 97 |
| BfaI | CTAG | 2 cut(s) | 219, 267 |
| BglII | AGATCT | 1 cut(s) | 212 |
| Bme18I | GGWCC | 1 cut(s) | 207 |
| BmgT120I | GGNCC | 1 cut(s) | 207 |
| BpuEI | CTTGAG | 2 cut(s) | 68, 310 |
| BsaI | GGTCTC | 1 cut(s) | 97 |
| BsaWI | WCCGGW | 1 cut(s) | 149 |
| Bse118I | RCCGGY | 1 cut(s) | 149 |
| BshTI | ACCGGT | 1 cut(s) | 149 |
| BsiSI | CCGG | 1 cut(s) | 150 |
| BsmAI | GTCTC | 1 cut(s) | 97 |
| BsmI | GAATGC | 1 cut(s) | 236 |
| Bso31I | GGTCTC | 1 cut(s) | 97 |
| Bsp143I | GATC | 6 cut(s) | 6, 16, 212, 243, 326, 333 |
| BspPI | GGATC | 2 cut(s) | 11, 341 |
| BspTNI | GGTCTC | 1 cut(s) | 97 |
| BsrFI | RCCGGY | 1 cut(s) | 149 |
| BssAI | RCCGGY | 1 cut(s) | 149 |
| BssMI | GATC | 6 cut(s) | 6, 16, 212, 243, 326, 333 |
| Bst6I | CTCTTC | 3 cut(s) | 95, 231, 289 |
| BstKTI | GATC | 6 cut(s) | 9, 19, 215, 246, 329, 336 |
| BstMAI | GTCTC | 1 cut(s) | 97 |
| BstMBI | GATC | 6 cut(s) | 6, 16, 212, 243, 326, 333 |
| BstNSI | RCATGY | 1 cut(s) | 128 |
| BstX2I | RGATCY | 2 cut(s) | 16, 212 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 77, 314 |
| BstYI | RGATCY | 2 cut(s) | 16, 212 |
| Cfr10I | RCCGGY | 1 cut(s) | 149 |
| Cfr13I | GGNCC | 1 cut(s) | 207 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CspAI | ACCGGT | 1 cut(s) | 149 |
| CviAII | CATG | 1 cut(s) | 125 |
| CviJI | RGCY | 5 cut(s) | 90, 115, 194, 222, 254 |
| CviKI_1 | RGCY | 5 cut(s) | 90, 115, 194, 222, 254 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DpnI | GATC | 6 cut(s) | 8, 18, 214, 245, 328, 335 |
| DpnII | GATC | 6 cut(s) | 6, 16, 212, 243, 326, 333 |
| Eam1104I | CTCTTC | 3 cut(s) | 95, 231, 289 |
| EarI | CTCTTC | 3 cut(s) | 95, 231, 289 |
| Eco31I | GGTCTC | 1 cut(s) | 97 |
| Eco32I | GATATC | 1 cut(s) | 264 |
| Eco47I | GGWCC | 1 cut(s) | 207 |
| EcoRV | GATATC | 1 cut(s) | 264 |
| FaeI | CATG | 1 cut(s) | 128 |
| FaiI | YATR | 4 cut(s) | 75, 93, 126, 257 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 45, 77 |
| FatI | CATG | 1 cut(s) | 124 |
| FspBI | CTAG | 2 cut(s) | 219, 267 |
| HapII | CCGG | 1 cut(s) | 150 |
| Hin1II | CATG | 1 cut(s) | 128 |
| HinfI | GANTC | 2 cut(s) | 131, 184 |
| HpaII | CCGG | 1 cut(s) | 150 |
| HphI | GGTGA | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 2 cut(s) | 67, 282 |
| Hpy188I | TCNGA | 1 cut(s) | 248 |
| Hpy188III | TCNNGA | 3 cut(s) | 241, 267, 289 |
| Hpy8I | GTNNAC | 2 cut(s) | 67, 282 |
| HpyAV | CCTTC | 1 cut(s) | 295 |
| HpyCH4IV | ACGT | 1 cut(s) | 29 |
| HpyCH4V | TGCA | 1 cut(s) | 236 |
| HpySE526I | ACGT | 1 cut(s) | 29 |
| Hsp92II | CATG | 1 cut(s) | 128 |
| Kzo9I | GATC | 6 cut(s) | 6, 16, 212, 243, 326, 333 |
| LpnPI | CCDG | 3 cut(s) | 27, 163, 223 |
| MaeI | CTAG | 2 cut(s) | 219, 267 |
| MaeII | ACGT | 1 cut(s) | 29 |
| MaeIII | GTNAC | 1 cut(s) | 140 |
| MalI | GATC | 6 cut(s) | 8, 18, 214, 245, 328, 335 |
| MboI | GATC | 6 cut(s) | 6, 16, 212, 243, 326, 333 |
| MboII | GAAGA | 4 cut(s) | 112, 207, 218, 306 |
| MflI | RGATCY | 2 cut(s) | 16, 212 |
| MnlI | CCTC | 4 cut(s) | 90, 198, 234, 252 |
| MseI | TTAA | 2 cut(s) | 84, 346 |
| MslI | CAYNNNNRTG | 2 cut(s) | 75, 312 |
| MspI | CCGG | 1 cut(s) | 150 |
| Mva1269I | GAATGC | 1 cut(s) | 236 |
| NdeII | GATC | 6 cut(s) | 6, 16, 212, 243, 326, 333 |
| NlaIII | CATG | 1 cut(s) | 128 |
| NspI | RCATGY | 1 cut(s) | 128 |
| PciI | ACATGT | 1 cut(s) | 124 |
| PctI | GAATGC | 1 cut(s) | 236 |
| PfeI | GAWTC | 2 cut(s) | 131, 184 |
| PinAI | ACCGGT | 1 cut(s) | 149 |
| PscI | ACATGT | 1 cut(s) | 124 |
| PshBI | ATTAAT | 1 cut(s) | 84 |
| PspPI | GGNCC | 1 cut(s) | 207 |
| PsuI | RGATCY | 2 cut(s) | 16, 212 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 2 cut(s) | 75, 312 |
| SaqAI | TTAA | 2 cut(s) | 84, 346 |
| Sau3AI | GATC | 6 cut(s) | 6, 16, 212, 243, 326, 333 |
| Sau96I | GGNCC | 1 cut(s) | 207 |
| SetI | ASST | 6 cut(s) | 32, 109, 117, 278, 287, 343 |
| SinI | GGWCC | 1 cut(s) | 207 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 75, 312 |
| SmlI | CTYRAG | 2 cut(s) | 47, 289 |
| SmoI | CTYRAG | 2 cut(s) | 47, 289 |
| SspMI | CTAG | 2 cut(s) | 219, 267 |
| TaiI | ACGT | 1 cut(s) | 32 |
| TaqI | TCGA | 6 cut(s) | 9, 129, 167, 187, 325, 336 |
| TfiI | GAWTC | 2 cut(s) | 131, 184 |
| Tru1I | TTAA | 2 cut(s) | 84, 346 |
| Tru9I | TTAA | 2 cut(s) | 84, 346 |
| VpaK11BI | GGWCC | 1 cut(s) | 207 |
| VspI | ATTAAT | 1 cut(s) | 84 |
| XbaI | TCTAGA | 1 cut(s) | 266 |
| XceI | RCATGY | 1 cut(s) | 128 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 311 |
| XspI | CTAG | 2 cut(s) | 219, 267 |