AT5G56880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013232
Physical Location & Seq
Reverse (-)
23008764 .. 23009709
946 bp
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UTR
Exon/CDS
Intron
AT5G56880.1

Sequence Viewer

Length: 480 bp
ATGGAAGAAATGAGGAACAAAGTAGACGAGAACGGAAAAAATACGACCGCGAAGGAAGTGACGAAGAAGACGACGATGCTCGTTGCCGGAGAGTATGACGAGTATACACCGGATGAAATCATGAGTCTCGTTGAGTCTTCTTCACCGACAATGACGACGACGGAGATCGAAGGAACTAACTTTTCCGGCGAGGGGAGTTTTAGAGTGAGGTTTATCGACGACCCGTACGCTATGCCGGTGGTTGTTCAGTCGTCTTCCGGTTACATCACGATCAATGTCAACGAAGAAAGCTGTGGTCCGTCCTTTTCAGACAGCGACTCTTCCGTCATGGCAAGCGTCGACGCTAGTGGTCTGTTCGGTTGCTGTTTCGAATACGGAAACGAGAAAGGCGGCGCGTGGAGTACAAACGAGGTGAGAGCGAGTGAGTATGAGTGGAACGACGATATGTTGGCGAGGTTTCTAGGCGAAGACTGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.47

Weight (kDa)

4.07

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56880
fragaria_vesca FvH4_1g07430 FvH4_1g21692
malus_domestica MD02G1079500.v1.1 MD15G1207000.v1.1
prunus_persica Prupe.7G209700_v2.0.a1
pyrus_communis pycom02g06330
rosa_laevigata RLG00000016392
rosa_multiflora Rmu_sc0005227.1_g000006 Rmu_sc0005227.1_g000007 Rmu_sc0005227.1_g000008
rosa_roxburghii Rroxscaffold_2G00148170
rosa_rugosa Rorug02G0034900
rosa_samantha Rh2AG081100 Rh2BG082200 Rh2CG084400 Rh2DG080100
rosa_wichuraiana Rw2G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
AccI GTMKAC 3 cut(s) 24, 104, 339
AccII CGCG 2 cut(s) 50, 395
AciI CCGC 2 cut(s) 48, 390
AfaI GTAC 2 cut(s) 227, 403
AfiI CCNNNNNNNGG 1 cut(s) 192
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 135, 424
AsuII TTCGAA 1 cut(s) 369
AvaII GGWCC 1 cut(s) 296
BbsI GAAGAC 4 cut(s) 74, 129, 246, 474
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 2 cut(s) 345, 461
BisI GCNGC 1 cut(s) 391
BlsI GCNGC 1 cut(s) 392
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmsI GCATC 1 cut(s) 66
BpiI GAAGAC 4 cut(s) 74, 129, 246, 474
Bpu14I TTCGAA 1 cut(s) 369
BsaWI WCCGGW 2 cut(s) 109, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse118I RCCGGY 1 cut(s) 235
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 192
Bsh1236I CGCG 2 cut(s) 50, 395
Bsh1285I CGRYCG 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 5 cut(s) 87, 110, 186, 236, 258
BsiWI CGTACG 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 369
Bsp143I GATC 2 cut(s) 165, 270
BspACI CCGC 2 cut(s) 48, 390
BspFNI CGCG 2 cut(s) 50, 395
BspHI TCATGA 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssMI GATC 2 cut(s) 165, 270
BssNAI GTATAC 1 cut(s) 105
Bst1107I GTATAC 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 473
Bst6I CTCTTC 1 cut(s) 325
BstBI TTCGAA 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 334
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 2 cut(s) 50, 395
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 2 cut(s) 168, 273
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 165, 270
BstMCI CGRYCG 1 cut(s) 48
BstUI CGCG 2 cut(s) 50, 395
BstV2I GAAGAC 4 cut(s) 74, 129, 246, 474
BstZ17I GTATAC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 334
CciI TCATGA 1 cut(s) 120
CfoI GCGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 296
CseI GACGC 2 cut(s) 325, 350
Csp6I GTAC 2 cut(s) 226, 402
CviAII CATG 2 cut(s) 121, 328
CviJI RGCY 1 cut(s) 291
CviKI_1 RGCY 1 cut(s) 291
CviQI GTAC 2 cut(s) 226, 402
DpnI GATC 2 cut(s) 167, 272
DpnII GATC 2 cut(s) 165, 270
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 296
FaeI CATG 2 cut(s) 124, 331
FaiI YATR 7 cut(s) 96, 105, 122, 233, 329, 429, 446
FatI CATG 2 cut(s) 120, 327
FblI GTMKAC 3 cut(s) 24, 104, 339
Fnu4HI GCNGC 1 cut(s) 391
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 391
FspBI CTAG 2 cut(s) 345, 461
GlaI GCGC 1 cut(s) 394
GluI GCNGC 1 cut(s) 391
HapII CCGG 5 cut(s) 87, 110, 186, 236, 258
HgaI GACGC 2 cut(s) 325, 350
HhaI GCGC 1 cut(s) 395
Hin1II CATG 2 cut(s) 124, 331
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HincII GTYRAC 2 cut(s) 280, 340
HindII GTYRAC 2 cut(s) 280, 340
HinfI GANTC 3 cut(s) 124, 134, 317
HpaII CCGG 5 cut(s) 87, 110, 186, 236, 258
HphI GGTGA 2 cut(s) 135, 424
Hpy166II GTNNAC 4 cut(s) 25, 105, 280, 340
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 2 cut(s) 121, 268
Hpy8I GTNNAC 4 cut(s) 25, 105, 280, 340
Hpy99I CGWCG 7 cut(s) 76, 160, 163, 221, 341, 344, 443
HpyAV CCTTC 2 cut(s) 46, 164
HpyCH4III ACNGT 1 cut(s) 473
Hsp92II CATG 2 cut(s) 124, 331
HspAI GCGC 1 cut(s) 393
Kzo9I GATC 2 cut(s) 165, 270
LpnPI CCDG 5 cut(s) 100, 123, 199, 249, 271
LweI GCATC 1 cut(s) 66
MaeI CTAG 2 cut(s) 345, 461
MaeIII GTNAC 2 cut(s) 58, 260
MalI GATC 2 cut(s) 167, 272
MboI GATC 2 cut(s) 165, 270
MboII GAAGA 9 cut(s) 17, 76, 79, 129, 132, 246, 296, 312, 479
MlyI GAGTC 3 cut(s) 133, 143, 311
MnlI CCTC 5 cut(s) 6, 184, 201, 403, 447
MspI CCGG 5 cut(s) 87, 110, 186, 236, 258
MvnI CGCG 2 cut(s) 50, 395
NdeII GATC 2 cut(s) 165, 270
NlaIII CATG 2 cut(s) 124, 331
NmuCI GTSAC 1 cut(s) 58
NspV TTCGAA 1 cut(s) 369
PagI TCATGA 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 68
Pfl23II CGTACG 1 cut(s) 225
PkrI GCNGC 1 cut(s) 392
PleI GAGTC 3 cut(s) 132, 142, 311
PpsI GAGTC 3 cut(s) 132, 142, 311
PspLI CGTACG 1 cut(s) 225
PspPI GGNCC 1 cut(s) 296
RsaI GTAC 2 cut(s) 227, 403
RsaNI GTAC 2 cut(s) 226, 402
SalI GTCGAC 1 cut(s) 338
SatI GCNGC 1 cut(s) 391
Sau3AI GATC 2 cut(s) 165, 270
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 3 cut(s) 133, 143, 311
SetI ASST 4 cut(s) 212, 293, 414, 458
SfaNI GCATC 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 369
SgrDI CGTCGACG 1 cut(s) 338
SinI GGWCC 1 cut(s) 296
SsiI CCGC 2 cut(s) 48, 390
SspMI CTAG 2 cut(s) 345, 461
TaaI ACNGT 1 cut(s) 473
TaqI TCGA 4 cut(s) 168, 216, 339, 369
TatI WGTACW 1 cut(s) 401
TauI GCSGC 1 cut(s) 393
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 5 cut(s) 48, 176, 288, 313, 390
VpaK11BI GGWCC 1 cut(s) 296
XmiI GTMKAC 3 cut(s) 24, 104, 339
XspI CTAG 2 cut(s) 345, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.