Prupe.7G209700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013232
Physical Location & Seq
Forward (+)
19213171 .. 19214743
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G209700.1

Sequence Viewer

Length: 528 bp
ATGGCGGACACAGACAGGGGAACGCTTAAGAGGCCTGGAGACGAAGCTTTGGAGGAGAAGGCGGTGAAGAGGCAGCGAGATCTGGAGGTGGAAGGAGATCAAAACGACGACATTTTGACTCTGCTGTTCAACGAACCCGACGAGACGCTCGACGAGGTGATGAAGCTTCTGGACGCGGCGGACAACGGTGCTAGTTGTACTACTGGCGCGAAGGTGAGGTTCGTCAACGACCCGTACTCGCCGTCATCGTATTTCACCGTCAACGGCAACGAGGAGAGCTGCGGGTCGTCGTTCTCGGAGCTGGAGTCGACGTGCATGGTGGGCGTCGACATATGCGGTGGCGGGCTAGGCATTGGAGCGGAGGTTATGGGCTTGGAGTTTGATATGTGGTTGATGGAGGAGGCGAAGGAGGAGAACGGCGGCGCGTGTGGTGTAATCGAGGAGGAGGCGCGTGGTGGAGGGTGGGACATGGAGGCAGAGTGGGATGATGCTGCGCTGGCGAGGTTCATCGGGGAAGACCTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

18.95

Weight (kDa)

4.05

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56880
fragaria_vesca FvH4_1g07430 FvH4_1g21692
malus_domestica MD02G1079500.v1.1 MD15G1207000.v1.1
prunus_persica Prupe.7G209700_v2.0.a1
pyrus_communis pycom02g06330
rosa_laevigata RLG00000016392
rosa_multiflora Rmu_sc0005227.1_g000006 Rmu_sc0005227.1_g000007 Rmu_sc0005227.1_g000008
rosa_roxburghii Rroxscaffold_2G00148170
rosa_rugosa Rorug02G0034900
rosa_samantha Rh2AG081100 Rh2BG082200 Rh2CG084400 Rh2DG080100
rosa_wichuraiana Rw2G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 359
AccI GTMKAC 2 cut(s) 308, 327
AccII CGCG 4 cut(s) 176, 209, 425, 451
AciI CCGC 9 cut(s) 5, 62, 176, 179, 282, 336, 342, 359, 420
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 2 cut(s) 199, 236
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 130
AjiI CACGTC 1 cut(s) 312
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 4 cut(s) 47, 166, 279, 301
AluI AGCT 4 cut(s) 47, 166, 279, 301
Alw26I GTCTC 2 cut(s) 33, 137
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 3 cut(s) 73, 279, 491
AspLEI GCGC 4 cut(s) 209, 425, 451, 496
AsuHPI GGTGA 4 cut(s) 76, 169, 226, 247
BbsI GAAGAC 1 cut(s) 522
BbvI GCAGC 3 cut(s) 85, 266, 478
BccI CCATC 1 cut(s) 388
BceAI ACGGC 3 cut(s) 226, 280, 433
BciT130I CCWGG 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 33, 137
BfaI CTAG 2 cut(s) 192, 347
BfrI CTTAAG 1 cut(s) 26
BglII AGATCT 1 cut(s) 79
BisI GCNGC 5 cut(s) 74, 177, 280, 421, 492
BlsI GCNGC 5 cut(s) 75, 178, 281, 422, 493
Bme1390I CCNGG 1 cut(s) 36
BmgBI CACGTC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 478
BpiI GAAGAC 1 cut(s) 522
BpmI CTGGAG 3 cut(s) 57, 104, 323
BsaHI GRCGYC 1 cut(s) 324
BsaXI ACNNNNNCTCC 8 cut(s) 290, 296, 320, 326, 348, 378, 464, 494
Bse1I ACTGG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 490
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 6 cut(s) 68, 287, 413, 425, 455, 458
BseXI GCAGC 3 cut(s) 85, 266, 478
Bsh1236I CGCG 4 cut(s) 176, 209, 425, 451
BshFI GGCC 1 cut(s) 34
BslFI GGGAC 1 cut(s) 479
BsmAI GTCTC 2 cut(s) 33, 137
BsmBI CGTCTC 2 cut(s) 33, 137
BsmFI GGGAC 1 cut(s) 479
BsnI GGCC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 79, 97
BspACI CCGC 9 cut(s) 5, 62, 176, 179, 282, 336, 342, 359, 420
BspANI GGCC 1 cut(s) 34
BspFNI CGCG 4 cut(s) 176, 209, 425, 451
BspTI CTTAAG 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 359
BsrI ACTGG 1 cut(s) 208
BssMI GATC 2 cut(s) 79, 97
BssNI GRCGYC 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 188, 259
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 324
BstAFI CTTAAG 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 344, 498
BstF5I GGATG 1 cut(s) 490
BstFNI CGCG 4 cut(s) 176, 209, 425, 451
BstHHI GCGC 4 cut(s) 209, 425, 451, 496
BstKTI GATC 2 cut(s) 82, 100
BstMAI GTCTC 2 cut(s) 33, 137
BstMBI GATC 2 cut(s) 79, 97
BstMWI GCNNNNNNNGC 4 cut(s) 31, 321, 348, 497
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstUI CGCG 4 cut(s) 176, 209, 425, 451
BstV1I GCAGC 3 cut(s) 85, 266, 478
BstV2I GAAGAC 1 cut(s) 522
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 34
BtrI CACGTC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 490
Cac8I GCNNGC 2 cut(s) 344, 498
CfoI GCGC 4 cut(s) 209, 425, 451, 496
CseI GACGC 3 cut(s) 154, 182, 313
Csp6I GTAC 2 cut(s) 198, 235
CviAII CATG 2 cut(s) 316, 469
CviJI RGCY 7 cut(s) 34, 47, 166, 279, 301, 346, 372
CviKI_1 RGCY 7 cut(s) 34, 47, 166, 279, 301, 346, 372
CviQI GTAC 2 cut(s) 198, 235
DpnI GATC 2 cut(s) 81, 99
DpnII GATC 2 cut(s) 79, 97
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EciI GGCGGA 2 cut(s) 20, 194
Eco147I AGGCCT 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 34
Esp3I CGTCTC 2 cut(s) 33, 137
FaeI CATG 2 cut(s) 319, 472
FaiI YATR 6 cut(s) 317, 332, 334, 368, 386, 470
FaqI GGGAC 1 cut(s) 479
FatI CATG 2 cut(s) 315, 468
FauI CCCGC 2 cut(s) 275, 335
FauNDI CATATG 1 cut(s) 332
FblI GTMKAC 2 cut(s) 308, 327
Fnu4HI GCNGC 5 cut(s) 74, 177, 280, 421, 492
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 5 cut(s) 74, 177, 280, 421, 492
FspBI CTAG 2 cut(s) 192, 347
GlaI GCGC 4 cut(s) 208, 424, 450, 495
GluI GCNGC 5 cut(s) 74, 177, 280, 421, 492
GsuI CTGGAG 3 cut(s) 57, 104, 323
HaeIII GGCC 1 cut(s) 34
HgaI GACGC 3 cut(s) 154, 182, 313
HhaI GCGC 4 cut(s) 209, 425, 451, 496
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 2 cut(s) 319, 472
Hin6I GCGC 4 cut(s) 207, 423, 449, 494
HinP1I GCGC 4 cut(s) 207, 423, 449, 494
HincII GTYRAC 4 cut(s) 226, 262, 309, 328
HindII GTYRAC 4 cut(s) 226, 262, 309, 328
HindIII AAGCTT 2 cut(s) 45, 164
HinfI GANTC 2 cut(s) 118, 305
HphI GGTGA 4 cut(s) 76, 169, 226, 247
Hpy166II GTNNAC 4 cut(s) 226, 262, 309, 328
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 2 cut(s) 83, 170
Hpy8I GTNNAC 4 cut(s) 226, 262, 309, 328
Hpy99I CGWCG 6 cut(s) 110, 143, 155, 292, 313, 329
HpyAV CCTTC 4 cut(s) 52, 86, 205, 400
HpyCH4III ACNGT 2 cut(s) 188, 259
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 321, 348, 497
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 2 cut(s) 319, 472
HspAI GCGC 4 cut(s) 207, 423, 449, 494
Kzo9I GATC 2 cut(s) 79, 97
LmnI GCTCC 2 cut(s) 298, 356
LpnPI CCDG 7 cut(s) 21, 48, 68, 155, 189, 287, 482
Lsp1109I GCAGC 3 cut(s) 85, 266, 478
LweI GCATC 1 cut(s) 478
MaeI CTAG 2 cut(s) 192, 347
MaeII ACGT 1 cut(s) 311
MalI GATC 2 cut(s) 81, 99
MbiI CCGCTC 1 cut(s) 359
MboI GATC 2 cut(s) 79, 97
MboII GAAGA 2 cut(s) 79, 527
MflI RGATCY 1 cut(s) 79
MlyI GAGTC 2 cut(s) 112, 314
MseI TTAA 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
MvnI CGCG 4 cut(s) 176, 209, 425, 451
MwoI GCNNNNNNNGC 4 cut(s) 31, 321, 348, 497
NdeI CATATG 1 cut(s) 332
NdeII GATC 2 cut(s) 79, 97
NlaIII CATG 2 cut(s) 319, 472
PceI AGGCCT 1 cut(s) 34
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 147, 245
PkrI GCNGC 5 cut(s) 75, 178, 281, 422, 493
PleI GAGTC 2 cut(s) 112, 313
PpsI GAGTC 2 cut(s) 112, 313
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 2 cut(s) 199, 236
RsaNI GTAC 2 cut(s) 198, 235
SalI GTCGAC 2 cut(s) 307, 326
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 5 cut(s) 74, 177, 280, 421, 492
Sau3AI GATC 2 cut(s) 79, 97
SchI GAGTC 2 cut(s) 112, 314
ScrFI CCNGG 1 cut(s) 36
SfaNI GCATC 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SseBI AGGCCT 1 cut(s) 34
SsiI CCGC 9 cut(s) 5, 62, 176, 179, 282, 336, 342, 359, 420
SspMI CTAG 2 cut(s) 192, 347
StuI AGGCCT 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 2 cut(s) 188, 259
TaiI ACGT 1 cut(s) 314
TaqI TCGA 4 cut(s) 150, 308, 327, 438
TatI WGTACW 1 cut(s) 197
TauI GCSGC 2 cut(s) 179, 423
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseI GCWGC 3 cut(s) 73, 279, 491
TspDTI ATGAA 2 cut(s) 176, 496
Vha464I CTTAAG 1 cut(s) 26
XmiI GTMKAC 2 cut(s) 308, 327
XspI CTAG 2 cut(s) 192, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.