Rh2CG084400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013232
Physical Location & Seq
Reverse (-)
6941163 .. 6942461
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG084400.1

Sequence Viewer

Length: 840 bp
ATGGAGGACATGCGGAAGAGGCCCGGAGCTGACGTCACGACCGACGACGCGTCGTCCTCGTCCTCCGCGAAGAGGCGGCGAGATCAGGCCGAAGGAGGCGGTGGCATTTCGGTTGTTCCTCCGGTAGCGAACGACGTCGTCGTTGCGGACAGAGGCGACGTTTCGGTTACTCCGGCAGTGAACGACGTCGTTGCGGACAACGGCGACATTTTGGCTCCTCCGGCAGTGAACGGCGTCGTTGCGGACAGTGGAGACGTTTCGGTTCCTCCGGCCGCGAACGACGTCGTTGTGGAAAACGGCGACATTTCGGTTCCTCCGGCAATGAACGGTGTCGTTGCGGTTCCTCCGGCAATGAACGGCGTCGTTGCGGTTCCTCCGGCAGTGAACGACGTCGTTGCGGAGAGCGGCGACGAGACGGCGAGCGAGCTCTCGAGGCTTCTGGAGACGGACTACCTGTCGCGGAACTCGGTCGCTGCTCCGGCGAGATTGACGTTCTCGGAGCACCCGTCCAGGTCGCCGAAGCTGTTCCAGACGATGTCGACTTCGTACATCACGATAAACGGGAACGAGGAGAGTTGCGGCTCGTCGTTCTCGGACGCCGAGTCGTCGGTGATGGCGAGCGTGGACAGGACCGGGCGCGACGTGGAGCAGGTGAAGCTGGACTACGAGTGGTACGCGGCGGAGAGATGGGCGGAGGGGCACGGCGAGTCGGGATTCGACGACCGCGCGTGGGATGCTGCCGATCAGTCGGCGCGTGAAAGAATGGTGCTCAACTTGGACTTGAATTCGGAGTGGGACGACGCCGCGCTGGCCAGGTTTGTAGGTGAAGACCTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

29.35

Weight (kDa)

4.15

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56880
fragaria_vesca FvH4_1g07430 FvH4_1g21692
malus_domestica MD02G1079500.v1.1 MD15G1207000.v1.1
prunus_persica Prupe.7G209700_v2.0.a1
pyrus_communis pycom02g06330
rosa_laevigata RLG00000016392
rosa_multiflora Rmu_sc0005227.1_g000006 Rmu_sc0005227.1_g000007 Rmu_sc0005227.1_g000008
rosa_roxburghii Rroxscaffold_2G00148170
rosa_rugosa Rorug02G0034900
rosa_samantha Rh2AG081100 Rh2BG082200 Rh2CG084400 Rh2DG080100
rosa_wichuraiana Rw2G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 640
AatII GACGTC 5 cut(s) 36, 138, 189, 285, 393
Acc36I ACCTGC 1 cut(s) 640
AccBSI CCGCTC 1 cut(s) 405
AccI GTMKAC 1 cut(s) 539
AcoI YGGCCR 2 cut(s) 270, 810
AcsI RAATTY 1 cut(s) 784
AcyI GRCGYC 9 cut(s) 33, 135, 186, 234, 282, 360, 390, 597, 801
AfaI GTAC 2 cut(s) 548, 674
AfiI CCNNNNNNNGG 2 cut(s) 72, 730
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 1 cut(s) 784
AhdI GACNNNNNGTC 4 cut(s) 49, 52, 454, 601
AjiI CACGTC 1 cut(s) 643
AjnI CCWGG 2 cut(s) 509, 812
AluBI AGCT 4 cut(s) 29, 427, 523, 658
AluI AGCT 4 cut(s) 29, 427, 523, 658
Alw21I GWGCWC 3 cut(s) 429, 504, 771
Alw26I GTCTC 3 cut(s) 246, 407, 437
Ama87I CYCGRG 1 cut(s) 430
AoxI GGCC 4 cut(s) 20, 87, 270, 810
ApeKI GCWGC 2 cut(s) 473, 737
ApoI RAATTY 1 cut(s) 784
Asp700I GAANNNNTTC 1 cut(s) 524
AspLEI GCGC 4 cut(s) 639, 728, 754, 808
AspS9I GGNCC 2 cut(s) 21, 630
AsuC2I CCSGG 2 cut(s) 24, 634
AsuHPI GGTGA 3 cut(s) 622, 664, 836
AvaI CYCGRG 1 cut(s) 430
AvaII GGWCC 1 cut(s) 630
BaeGI GKGCMC 1 cut(s) 702
BalI TGGCCA 1 cut(s) 812
BanII GRGCYC 1 cut(s) 429
BarI GAAGNNNNNNTAC 2 cut(s) 647, 679
BbsI GAAGAC 1 cut(s) 834
Bbv12I GWGCWC 3 cut(s) 429, 504, 771
BbvI GCAGC 2 cut(s) 460, 724
BccI CCATC 2 cut(s) 607, 681
BceAI ACGGC 6 cut(s) 217, 247, 313, 373, 432, 718
BcgI CGANNNNNNTGC 4 cut(s) 173, 207, 377, 411
BciT130I CCWGG 2 cut(s) 511, 814
BcnI CCSGG 2 cut(s) 24, 634
BcoDI GTCTC 3 cut(s) 246, 407, 437
BfuAI ACCTGC 1 cut(s) 640
BglI GCCNNNNNGGC 1 cut(s) 809
BisI GCNGC 8 cut(s) 77, 273, 406, 474, 580, 678, 738, 804
BlsI GCNGC 8 cut(s) 78, 274, 407, 475, 581, 679, 739, 805
Bme1390I CCNGG 4 cut(s) 24, 511, 634, 814
Bme18I GGWCC 1 cut(s) 630
BmeRI GACNNNNNGTC 4 cut(s) 49, 52, 454, 601
BmeT110I CYCGRG 1 cut(s) 430
BmgBI CACGTC 1 cut(s) 643
BmgT120I GGNCC 2 cut(s) 21, 630
BmiI GGNNCC 5 cut(s) 216, 264, 312, 342, 372
BmrFI CCNGG 4 cut(s) 24, 511, 634, 814
BmsI GCATC 1 cut(s) 724
BpiI GAAGAC 1 cut(s) 834
BpmI CTGGAG 1 cut(s) 461
BpuMI CCSGG 2 cut(s) 24, 634
BsaHI GRCGYC 9 cut(s) 33, 135, 186, 234, 282, 360, 390, 597, 801
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 491, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 730
Bse3DI GCAATG 2 cut(s) 327, 357
BseBI CCWGG 2 cut(s) 511, 814
BseGI GGATG 1 cut(s) 739
BseLI CCNNNNNNNGG 2 cut(s) 72, 730
BseMI GCAATG 2 cut(s) 327, 357
BseRI GAGGAG 2 cut(s) 207, 584
BseSI GKGCMC 1 cut(s) 702
BseX3I CGGCCG 1 cut(s) 270
BseXI GCAGC 2 cut(s) 460, 724
Bsh1285I CGRYCG 4 cut(s) 42, 273, 471, 724
BshFI GGCC 4 cut(s) 22, 89, 272, 812
BsiEI CGRYCG 4 cut(s) 42, 273, 471, 724
BsiHKAI GWGCWC 3 cut(s) 429, 504, 771
BsiHKCI CYCGRG 1 cut(s) 430
BslFI GGGAC 1 cut(s) 809
BslI CCNNNNNNNGG 2 cut(s) 72, 730
BsmAI GTCTC 3 cut(s) 246, 407, 437
BsmBI CGTCTC 3 cut(s) 246, 407, 437
BsmFI GGGAC 1 cut(s) 809
BsnI GGCC 4 cut(s) 22, 89, 272, 812
BsoBI CYCGRG 1 cut(s) 430
Bsp1286I GDGCHC 4 cut(s) 429, 504, 702, 771
Bsp143I GATC 2 cut(s) 82, 742
BspANI GGCC 4 cut(s) 22, 89, 272, 812
BspLI GGNNCC 5 cut(s) 216, 264, 312, 342, 372
BspMI ACCTGC 1 cut(s) 640
BsrBI CCGCTC 1 cut(s) 405
BsrDI GCAATG 2 cut(s) 327, 357
BssMI GATC 2 cut(s) 82, 742
BssNI GRCGYC 9 cut(s) 33, 135, 186, 234, 282, 360, 390, 597, 801
Bst2UI CCWGG 2 cut(s) 511, 814
Bst4CI ACNGT 2 cut(s) 248, 329
Bst6I CTCTTC 2 cut(s) 11, 65
BstACI GRCGYC 9 cut(s) 33, 135, 186, 234, 282, 360, 390, 597, 801
BstC8I GCNNGC 4 cut(s) 421, 425, 619, 810
BstF5I GGATG 1 cut(s) 739
BstHHI GCGC 4 cut(s) 639, 728, 754, 808
BstKTI GATC 2 cut(s) 85, 745
BstMAI GTCTC 3 cut(s) 246, 407, 437
BstMBI GATC 2 cut(s) 82, 742
BstMCI CGRYCG 4 cut(s) 42, 273, 471, 724
BstMWI GCNNNNNNNGC 7 cut(s) 19, 221, 433, 479, 655, 734, 809
BstNI CCWGG 2 cut(s) 511, 814
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 4 cut(s) 22, 509, 632, 812
BstSLI GKGCMC 1 cut(s) 702
BstV1I GCAGC 2 cut(s) 460, 724
BstV2I GAAGAC 1 cut(s) 834
BstZI CGGCCG 1 cut(s) 270
BsuRI GGCC 4 cut(s) 22, 89, 272, 812
BtrI CACGTC 1 cut(s) 643
BtsCI GGATG 1 cut(s) 739
BtsI GCAGTG 3 cut(s) 183, 231, 387
BtsIMutI CAGTG 4 cut(s) 183, 231, 253, 387
BveI ACCTGC 1 cut(s) 640
Cac8I GCNNGC 4 cut(s) 421, 425, 619, 810
CfoI GCGC 4 cut(s) 639, 728, 754, 808
Cfr13I GGNCC 2 cut(s) 21, 630
CseI GACGC 6 cut(s) 39, 56, 223, 349, 605, 809
Csp6I GTAC 2 cut(s) 547, 673
CviAII CATG 1 cut(s) 10
CviQI GTAC 2 cut(s) 547, 673
DpnI GATC 2 cut(s) 84, 744
DpnII GATC 2 cut(s) 82, 742
DriI GACNNNNNGTC 4 cut(s) 49, 52, 454, 601
EaeI YGGCCR 2 cut(s) 270, 810
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 11, 65
Eam1105I GACNNNNNGTC 4 cut(s) 49, 52, 454, 601
EarI CTCTTC 2 cut(s) 11, 65
EciI GGCGGA 2 cut(s) 695, 707
Ecl136II GAGCTC 1 cut(s) 427
EclXI CGGCCG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 630
Eco52I CGGCCG 1 cut(s) 270
Eco53kI GAGCTC 1 cut(s) 427
Eco88I CYCGRG 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 784
EcoRII CCWGG 2 cut(s) 509, 812
EcoT38I GRGCYC 1 cut(s) 429
Esp3I CGTCTC 3 cut(s) 246, 407, 437
FaeI CATG 1 cut(s) 13
FaiI YATR 1 cut(s) 11
FaqI GGGAC 1 cut(s) 809
FatI CATG 1 cut(s) 9
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 8 cut(s) 77, 273, 406, 474, 580, 678, 738, 804
FokI GGATG 1 cut(s) 746
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 8 cut(s) 77, 273, 406, 474, 580, 678, 738, 804
GlaI GCGC 4 cut(s) 638, 727, 753, 807
GluI GCNGC 8 cut(s) 77, 273, 406, 474, 580, 678, 738, 804
GsuI CTGGAG 1 cut(s) 461
HaeIII GGCC 4 cut(s) 22, 89, 272, 812
HgaI GACGC 6 cut(s) 39, 56, 223, 349, 605, 809
HhaI GCGC 4 cut(s) 639, 728, 754, 808
Hin1I GRCGYC 9 cut(s) 33, 135, 186, 234, 282, 360, 390, 597, 801
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 4 cut(s) 637, 726, 752, 806
HinP1I GCGC 4 cut(s) 637, 726, 752, 806
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HinfI GANTC 3 cut(s) 602, 707, 714
HphI GGTGA 3 cut(s) 622, 664, 836
Hpy166II GTNNAC 5 cut(s) 181, 229, 385, 540, 625
Hpy188I TCNGA 3 cut(s) 499, 595, 790
Hpy188III TCNNGA 6 cut(s) 37, 430, 440, 529, 553, 711
Hpy8I GTNNAC 5 cut(s) 181, 229, 385, 540, 625
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 248, 329
HpyCH4IV ACGT 9 cut(s) 33, 135, 159, 186, 255, 282, 390, 491, 642
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 221, 433, 479, 655, 734, 809
HpySE526I ACGT 9 cut(s) 33, 135, 159, 186, 255, 282, 390, 491, 642
Hsp92I GRCGYC 9 cut(s) 33, 135, 186, 234, 282, 360, 390, 597, 801
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 4 cut(s) 637, 726, 752, 806
Kzo9I GATC 2 cut(s) 82, 742
LmnI GCTCC 5 cut(s) 26, 220, 481, 499, 646
Lsp1109I GCAGC 2 cut(s) 460, 724
LweI GCATC 1 cut(s) 724
MaeII ACGT 9 cut(s) 33, 135, 159, 186, 255, 282, 390, 491, 642
MaeIII GTNAC 2 cut(s) 34, 166
MalI GATC 2 cut(s) 84, 744
MbiI CCGCTC 1 cut(s) 405
MboI GATC 2 cut(s) 82, 742
MboII GAAGA 3 cut(s) 28, 82, 839
MfeI CAATTG 1 cut(s) 835
MhlI GDGCHC 4 cut(s) 429, 504, 702, 771
MlsI TGGCCA 1 cut(s) 812
MluCI AATT 2 cut(s) 784, 835
MluI ACGCGT 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 812
MlyI GAGTC 2 cut(s) 611, 716
Mox20I TGGCCA 1 cut(s) 812
MroXI GAANNNNTTC 1 cut(s) 524
MscI TGGCCA 1 cut(s) 812
Msp20I TGGCCA 1 cut(s) 812
MspR9I CCNGG 4 cut(s) 24, 511, 634, 814
MunI CAATTG 1 cut(s) 835
MvaI CCWGG 2 cut(s) 511, 814
MwoI GCNNNNNNNGC 7 cut(s) 19, 221, 433, 479, 655, 734, 809
NciI CCSGG 2 cut(s) 24, 634
NdeII GATC 2 cut(s) 82, 742
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 5 cut(s) 216, 264, 312, 342, 372
NmeAIII GCCGAG 1 cut(s) 625
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 13
PaeR7I CTCGAG 1 cut(s) 430
PaqCI CACCTGC 1 cut(s) 640
PcsI WCGNNNNNNNCGW 6 cut(s) 39, 65, 138, 503, 551, 614
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 1 cut(s) 714
PflFI GACNNNGTC 2 cut(s) 137, 535
PkrI GCNGC 8 cut(s) 78, 274, 407, 475, 581, 679, 739, 805
PleI GAGTC 2 cut(s) 610, 715
PpsI GAGTC 2 cut(s) 610, 715
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 2 cut(s) 509, 812
PspGI CCWGG 2 cut(s) 509, 812
PspN4I GGNNCC 5 cut(s) 216, 264, 312, 342, 372
PspPI GGNCC 2 cut(s) 21, 630
PsyI GACNNNGTC 2 cut(s) 137, 535
RsaI GTAC 2 cut(s) 548, 674
RsaNI GTAC 2 cut(s) 547, 673
SacI GAGCTC 1 cut(s) 429
SalI GTCGAC 1 cut(s) 538
SatI GCNGC 8 cut(s) 77, 273, 406, 474, 580, 678, 738, 804
Sau3AI GATC 2 cut(s) 82, 742
Sau96I GGNCC 2 cut(s) 21, 630
SchI GAGTC 2 cut(s) 611, 716
ScrFI CCNGG 4 cut(s) 24, 511, 634, 814
SduI GDGCHC 4 cut(s) 429, 504, 702, 771
SfaNI GCATC 1 cut(s) 724
Sfr274I CTCGAG 1 cut(s) 430
SinI GGWCC 1 cut(s) 630
SlaI CTCGAG 1 cut(s) 430
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 2 cut(s) 784, 835
SstI GAGCTC 1 cut(s) 429
StyD4I CCNGG 4 cut(s) 22, 509, 632, 812
TaaI ACNGT 2 cut(s) 248, 329
TaiI ACGT 9 cut(s) 36, 138, 162, 189, 258, 285, 393, 494, 645
TaqI TCGA 3 cut(s) 431, 539, 717
TaqII GACCGA 2 cut(s) 56, 457
TasI AATT 2 cut(s) 784, 835
TauI GCSGC 6 cut(s) 79, 275, 408, 582, 680, 806
TfiI GAWTC 1 cut(s) 714
TscAI CASTG 4 cut(s) 183, 231, 253, 387
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 2 cut(s) 473, 737
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 338, 368
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 4 cut(s) 183, 231, 253, 387
Tth111I GACNNNGTC 2 cut(s) 137, 535
VpaK11BI GGWCC 1 cut(s) 630
XapI RAATTY 1 cut(s) 784
XceI RCATGY 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 430
XmiI GTMKAC 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 524
ZraI GACGTC 5 cut(s) 34, 136, 187, 283, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.