Rh2AG081100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013232
Physical Location & Seq
Reverse (-)
6805100 .. 6805909
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG081100.1

Sequence Viewer

Length: 810 bp
ATGGAGGACATGCGGAAGAGGCCCGGAGCTGACGTCACGACCGACGACGCGTCGTCCTCATCCTCCGCGAAGAGGCGGCGAGATCAGGCCGAAGGAGGCGGTGGCATTTCGGTTGTTCCTCCGGTAGCGAAGGACGTCGTCGTTGCGGACAGAGGCGACGTTTCGGTTACTCCGGCGGTGAACGACGTCGTTGCGGACAACGGCGACATTTTGGCTCCTCCGGCAGTGAACGGCGTCGTTGCGGACAGTGGAGACGCTTCGGTTCCTCCGGCCGCGAACGACGTCGTTGTGGAAAACGGCGACATTTCGGTTCCTCCGGCAATGAACGGAGTCGTTGCGGTTCCTCCGGCAGTGAACGACGTCGTTGCGGAGAGCGGCGACGAGACGGCGAGCGAGCTCTCGAGGCTTCTGGAGACGGACTACCTGTCGCGGAACTCGGTCGCTGCTCCGGCGAGATTGACGTTCTCGGAGCACCCGTCCAGGTCGCCGAAGCTGTTCCAGACGATGTCGACTTCGTACATCACGATAAACGGGAACGAGGAGAGTTGCGGCTCGTCGTTCTCGGACGCCGAGTCGTCGGTGATGGCGAGCGTGGACAGGACCGGGCGCGACGTGGAGCAGGTGAGGCTGGACTACGAGTGGTACGCGGCGGAGAGATGGGCGGAGGGGCACGGCGAGTCGGGATTCGACGACCGCGCGTGGGATGCTGCCGATCAGTCGGCGCGTGAAAGAATGGTGCTCAACTTGGACTTGAATTCGGAGTGGGACGACGCCGCGCTGGCCAGGTTTGTAGGCGAAGACCTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

28.43

Weight (kDa)

4.19

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56880
fragaria_vesca FvH4_1g07430 FvH4_1g21692
malus_domestica MD02G1079500.v1.1 MD15G1207000.v1.1
prunus_persica Prupe.7G209700_v2.0.a1
pyrus_communis pycom02g06330
rosa_laevigata RLG00000016392
rosa_multiflora Rmu_sc0005227.1_g000006 Rmu_sc0005227.1_g000007 Rmu_sc0005227.1_g000008
rosa_roxburghii Rroxscaffold_2G00148170
rosa_rugosa Rorug02G0034900
rosa_samantha Rh2AG081100 Rh2BG082200 Rh2CG084400 Rh2DG080100
rosa_wichuraiana Rw2G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 610
AatII GACGTC 5 cut(s) 36, 138, 189, 285, 363
Acc36I ACCTGC 1 cut(s) 610
AccBSI CCGCTC 1 cut(s) 375
AccI GTMKAC 1 cut(s) 509
AcoI YGGCCR 2 cut(s) 270, 780
AcsI RAATTY 1 cut(s) 754
AcyI GRCGYC 8 cut(s) 33, 135, 186, 234, 282, 360, 567, 771
AfaI GTAC 2 cut(s) 518, 644
AfiI CCNNNNNNNGG 2 cut(s) 72, 700
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 1 cut(s) 754
AhdI GACNNNNNGTC 4 cut(s) 49, 52, 424, 571
AjiI CACGTC 1 cut(s) 613
AjnI CCWGG 2 cut(s) 479, 782
AluBI AGCT 3 cut(s) 29, 397, 493
AluI AGCT 3 cut(s) 29, 397, 493
Alw21I GWGCWC 3 cut(s) 399, 474, 741
Alw26I GTCTC 3 cut(s) 246, 377, 407
Ama87I CYCGRG 1 cut(s) 400
AoxI GGCC 4 cut(s) 20, 87, 270, 780
ApeKI GCWGC 2 cut(s) 443, 707
ApoI RAATTY 1 cut(s) 754
Asp700I GAANNNNTTC 1 cut(s) 494
AspLEI GCGC 4 cut(s) 609, 698, 724, 778
AspS9I GGNCC 2 cut(s) 21, 600
AsuC2I CCSGG 2 cut(s) 24, 604
AsuHPI GGTGA 3 cut(s) 190, 592, 634
AvaI CYCGRG 1 cut(s) 400
AvaII GGWCC 1 cut(s) 600
BaeGI GKGCMC 1 cut(s) 672
BalI TGGCCA 1 cut(s) 782
BanII GRGCYC 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 804
Bbv12I GWGCWC 3 cut(s) 399, 474, 741
BbvI GCAGC 2 cut(s) 430, 694
BccI CCATC 2 cut(s) 577, 651
BceAI ACGGC 5 cut(s) 217, 247, 313, 402, 688
BcgI CGANNNNNNTGC 4 cut(s) 173, 207, 347, 381
BciT130I CCWGG 2 cut(s) 481, 784
BcnI CCSGG 2 cut(s) 24, 604
BcoDI GTCTC 3 cut(s) 246, 377, 407
BfuAI ACCTGC 1 cut(s) 610
BglI GCCNNNNNGGC 1 cut(s) 779
BisI GCNGC 8 cut(s) 77, 273, 376, 444, 550, 648, 708, 774
BlsI GCNGC 8 cut(s) 78, 274, 377, 445, 551, 649, 709, 775
Bme1390I CCNGG 4 cut(s) 24, 481, 604, 784
Bme18I GGWCC 1 cut(s) 600
BmeRI GACNNNNNGTC 4 cut(s) 49, 52, 424, 571
BmeT110I CYCGRG 1 cut(s) 400
BmgBI CACGTC 1 cut(s) 613
BmgT120I GGNCC 2 cut(s) 21, 600
BmiI GGNNCC 4 cut(s) 216, 264, 312, 342
BmrFI CCNGG 4 cut(s) 24, 481, 604, 784
BmsI GCATC 1 cut(s) 694
BpiI GAAGAC 1 cut(s) 804
BpmI CTGGAG 1 cut(s) 431
BpuMI CCSGG 2 cut(s) 24, 604
BsaHI GRCGYC 8 cut(s) 33, 135, 186, 234, 282, 360, 567, 771
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 461, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 700
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 2 cut(s) 481, 784
BseGI GGATG 2 cut(s) 59, 709
BseLI CCNNNNNNNGG 2 cut(s) 72, 700
BseMI GCAATG 1 cut(s) 327
BseRI GAGGAG 2 cut(s) 207, 554
BseSI GKGCMC 1 cut(s) 672
BseX3I CGGCCG 1 cut(s) 270
BseXI GCAGC 2 cut(s) 430, 694
Bsh1285I CGRYCG 4 cut(s) 42, 273, 441, 694
BshFI GGCC 4 cut(s) 22, 89, 272, 782
BsiEI CGRYCG 4 cut(s) 42, 273, 441, 694
BsiHKAI GWGCWC 3 cut(s) 399, 474, 741
BsiHKCI CYCGRG 1 cut(s) 400
BsiSI CCGG 9 cut(s) 24, 122, 173, 221, 269, 317, 347, 449, 603
BslFI GGGAC 1 cut(s) 779
BslI CCNNNNNNNGG 2 cut(s) 72, 700
BsmAI GTCTC 3 cut(s) 246, 377, 407
BsmBI CGTCTC 3 cut(s) 246, 377, 407
BsmFI GGGAC 1 cut(s) 779
BsnI GGCC 4 cut(s) 22, 89, 272, 782
BsoBI CYCGRG 1 cut(s) 400
Bsp1286I GDGCHC 4 cut(s) 399, 474, 672, 741
Bsp143I GATC 2 cut(s) 82, 712
BspANI GGCC 4 cut(s) 22, 89, 272, 782
BspLI GGNNCC 4 cut(s) 216, 264, 312, 342
BspMI ACCTGC 1 cut(s) 610
BsrBI CCGCTC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 327
BssMI GATC 2 cut(s) 82, 712
BssNI GRCGYC 8 cut(s) 33, 135, 186, 234, 282, 360, 567, 771
Bst2UI CCWGG 2 cut(s) 481, 784
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 2 cut(s) 11, 65
BstACI GRCGYC 8 cut(s) 33, 135, 186, 234, 282, 360, 567, 771
BstC8I GCNNGC 4 cut(s) 391, 395, 589, 780
BstF5I GGATG 2 cut(s) 59, 709
BstHHI GCGC 4 cut(s) 609, 698, 724, 778
BstKTI GATC 2 cut(s) 85, 715
BstMAI GTCTC 3 cut(s) 246, 377, 407
BstMBI GATC 2 cut(s) 82, 712
BstMCI CGRYCG 4 cut(s) 42, 273, 441, 694
BstMWI GCNNNNNNNGC 7 cut(s) 19, 221, 403, 449, 625, 704, 779
BstNI CCWGG 2 cut(s) 481, 784
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 4 cut(s) 22, 479, 602, 782
BstSLI GKGCMC 1 cut(s) 672
BstV1I GCAGC 2 cut(s) 430, 694
BstV2I GAAGAC 1 cut(s) 804
BstZI CGGCCG 1 cut(s) 270
BsuRI GGCC 4 cut(s) 22, 89, 272, 782
BtrI CACGTC 1 cut(s) 613
BtsCI GGATG 2 cut(s) 59, 709
BtsI GCAGTG 2 cut(s) 231, 357
BtsIMutI CAGTG 3 cut(s) 231, 253, 357
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 4 cut(s) 391, 395, 589, 780
CfoI GCGC 4 cut(s) 609, 698, 724, 778
Cfr13I GGNCC 2 cut(s) 21, 600
CseI GACGC 6 cut(s) 39, 56, 223, 263, 575, 779
Csp6I GTAC 2 cut(s) 517, 643
CviAII CATG 1 cut(s) 10
CviQI GTAC 2 cut(s) 517, 643
DpnI GATC 2 cut(s) 84, 714
DpnII GATC 2 cut(s) 82, 712
DriI GACNNNNNGTC 4 cut(s) 49, 52, 424, 571
EaeI YGGCCR 2 cut(s) 270, 780
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 11, 65
Eam1105I GACNNNNNGTC 4 cut(s) 49, 52, 424, 571
EarI CTCTTC 2 cut(s) 11, 65
EciI GGCGGA 2 cut(s) 665, 677
Ecl136II GAGCTC 1 cut(s) 397
EclXI CGGCCG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 600
Eco52I CGGCCG 1 cut(s) 270
Eco53kI GAGCTC 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 397
EcoRI GAATTC 1 cut(s) 754
EcoRII CCWGG 2 cut(s) 479, 782
EcoT38I GRGCYC 1 cut(s) 399
Esp3I CGTCTC 3 cut(s) 246, 377, 407
FaeI CATG 1 cut(s) 13
FaiI YATR 1 cut(s) 11
FaqI GGGAC 1 cut(s) 779
FatI CATG 1 cut(s) 9
FblI GTMKAC 1 cut(s) 509
Fnu4HI GCNGC 8 cut(s) 77, 273, 376, 444, 550, 648, 708, 774
FokI GGATG 2 cut(s) 46, 716
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 8 cut(s) 77, 273, 376, 444, 550, 648, 708, 774
GlaI GCGC 4 cut(s) 608, 697, 723, 777
GluI GCNGC 8 cut(s) 77, 273, 376, 444, 550, 648, 708, 774
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 4 cut(s) 22, 89, 272, 782
HapII CCGG 9 cut(s) 24, 122, 173, 221, 269, 317, 347, 449, 603
HgaI GACGC 6 cut(s) 39, 56, 223, 263, 575, 779
HhaI GCGC 4 cut(s) 609, 698, 724, 778
Hin1I GRCGYC 8 cut(s) 33, 135, 186, 234, 282, 360, 567, 771
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 4 cut(s) 607, 696, 722, 776
HinP1I GCGC 4 cut(s) 607, 696, 722, 776
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 4 cut(s) 330, 572, 677, 684
HpaII CCGG 9 cut(s) 24, 122, 173, 221, 269, 317, 347, 449, 603
HphI GGTGA 3 cut(s) 190, 592, 634
Hpy166II GTNNAC 5 cut(s) 181, 229, 355, 510, 595
Hpy188I TCNGA 3 cut(s) 469, 565, 760
Hpy188III TCNNGA 6 cut(s) 37, 400, 410, 499, 523, 681
Hpy8I GTNNAC 5 cut(s) 181, 229, 355, 510, 595
HpyAV CCTTC 2 cut(s) 86, 124
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 8 cut(s) 33, 135, 159, 186, 282, 360, 461, 612
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 221, 403, 449, 625, 704, 779
HpySE526I ACGT 8 cut(s) 33, 135, 159, 186, 282, 360, 461, 612
Hsp92I GRCGYC 8 cut(s) 33, 135, 186, 234, 282, 360, 567, 771
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 4 cut(s) 607, 696, 722, 776
Kzo9I GATC 2 cut(s) 82, 712
LmnI GCTCC 5 cut(s) 26, 220, 451, 469, 616
Lsp1109I GCAGC 2 cut(s) 430, 694
LweI GCATC 1 cut(s) 694
MaeII ACGT 8 cut(s) 33, 135, 159, 186, 282, 360, 461, 612
MaeIII GTNAC 2 cut(s) 34, 166
MalI GATC 2 cut(s) 84, 714
MbiI CCGCTC 1 cut(s) 375
MboI GATC 2 cut(s) 82, 712
MboII GAAGA 3 cut(s) 28, 82, 809
MfeI CAATTG 1 cut(s) 805
MhlI GDGCHC 4 cut(s) 399, 474, 672, 741
MlsI TGGCCA 1 cut(s) 782
MluCI AATT 2 cut(s) 754, 805
MluI ACGCGT 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 782
MlyI GAGTC 3 cut(s) 339, 581, 686
Mox20I TGGCCA 1 cut(s) 782
MroXI GAANNNNTTC 1 cut(s) 494
MscI TGGCCA 1 cut(s) 782
Msp20I TGGCCA 1 cut(s) 782
MspI CCGG 9 cut(s) 24, 122, 173, 221, 269, 317, 347, 449, 603
MspR9I CCNGG 4 cut(s) 24, 481, 604, 784
MunI CAATTG 1 cut(s) 805
MvaI CCWGG 2 cut(s) 481, 784
MwoI GCNNNNNNNGC 7 cut(s) 19, 221, 403, 449, 625, 704, 779
NciI CCSGG 2 cut(s) 24, 604
NdeII GATC 2 cut(s) 82, 712
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 4 cut(s) 216, 264, 312, 342
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 13
PaeR7I CTCGAG 1 cut(s) 400
PaqCI CACCTGC 1 cut(s) 610
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 473, 521, 584
PdmI GAANNNNTTC 1 cut(s) 494
PfeI GAWTC 1 cut(s) 684
PflFI GACNNNGTC 2 cut(s) 137, 505
PkrI GCNGC 8 cut(s) 78, 274, 377, 445, 551, 649, 709, 775
PleI GAGTC 3 cut(s) 338, 580, 685
PpsI GAGTC 3 cut(s) 338, 580, 685
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 2 cut(s) 479, 782
PspGI CCWGG 2 cut(s) 479, 782
PspN4I GGNNCC 4 cut(s) 216, 264, 312, 342
PspPI GGNCC 2 cut(s) 21, 600
PsyI GACNNNGTC 2 cut(s) 137, 505
RsaI GTAC 2 cut(s) 518, 644
RsaNI GTAC 2 cut(s) 517, 643
SacI GAGCTC 1 cut(s) 399
SalI GTCGAC 1 cut(s) 508
SatI GCNGC 8 cut(s) 77, 273, 376, 444, 550, 648, 708, 774
Sau3AI GATC 2 cut(s) 82, 712
Sau96I GGNCC 2 cut(s) 21, 600
SchI GAGTC 3 cut(s) 339, 581, 686
ScrFI CCNGG 4 cut(s) 24, 481, 604, 784
SduI GDGCHC 4 cut(s) 399, 474, 672, 741
SfaNI GCATC 1 cut(s) 694
Sfr274I CTCGAG 1 cut(s) 400
SinI GGWCC 1 cut(s) 600
SlaI CTCGAG 1 cut(s) 400
SmlI CTYRAG 1 cut(s) 400
SmoI CTYRAG 1 cut(s) 400
Sse9I AATT 2 cut(s) 754, 805
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 4 cut(s) 22, 479, 602, 782
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 8 cut(s) 36, 138, 162, 189, 285, 363, 464, 615
TaqI TCGA 3 cut(s) 401, 509, 687
TaqII GACCGA 2 cut(s) 56, 427
TasI AATT 2 cut(s) 754, 805
TauI GCSGC 6 cut(s) 79, 275, 378, 552, 650, 776
TfiI GAWTC 1 cut(s) 684
TscAI CASTG 3 cut(s) 231, 253, 357
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 2 cut(s) 443, 707
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 338
TspGWI ACGGA 2 cut(s) 342, 431
TspRI CASTG 3 cut(s) 231, 253, 357
Tth111I GACNNNGTC 2 cut(s) 137, 505
VpaK11BI GGWCC 1 cut(s) 600
XapI RAATTY 1 cut(s) 754
XceI RCATGY 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 494
ZraI GACGTC 5 cut(s) 34, 136, 187, 283, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.