FvH4_1g21692

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013232
Physical Location & Seq
Forward (+)
13673139 .. 13673578
440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21692.t1

Sequence Viewer

Length: 324 bp
ATGCATCTGAAGGAGAGGAAGATAAGACGTACAACCCAGTTCGCATATAGTTTATATCGAATCAATGGTTTACCAAACAAAGGCACATGCTACAGCTGGACCAAGGACTTCGACAAGTCGGAATTCGACAACCGCGCATGGGATGCTGTCGATGTGTCGGCACGTGAGGGAACGGTGCTGAGCTTCGACTTGGATTTGGACTGGGACGATGCTGCGCTGGGCAGGTTTGTAGGTGACGACCTCAATTCCCAACTACCACCGGTTTTAGGTACTGATCAAGTAGGCATAGCGGTGGAGTTGTGTACAGTGCTAAACACAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.09

Weight (kDa)

4.68

Isoelectric Point (pI)

22.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56880
fragaria_vesca FvH4_1g07430 FvH4_1g21692
malus_domestica MD02G1079500.v1.1 MD15G1207000.v1.1
prunus_persica Prupe.7G209700_v2.0.a1
pyrus_communis pycom02g06330
rosa_laevigata RLG00000016392
rosa_multiflora Rmu_sc0005227.1_g000006 Rmu_sc0005227.1_g000007 Rmu_sc0005227.1_g000008
rosa_roxburghii Rroxscaffold_2G00148170
rosa_rugosa Rorug02G0034900
rosa_samantha Rh2AG081100 Rh2BG082200 Rh2CG084400 Rh2DG080100
rosa_wichuraiana Rw2G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 213
AccII CGCG 1 cut(s) 135
AciI CCGC 2 cut(s) 133, 290
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 29
AcvI CACGTG 1 cut(s) 164
AfaI GTAC 3 cut(s) 31, 271, 304
AfiI CCNNNNNNNGG 3 cut(s) 80, 139, 266
AgeI ACCGGT 1 cut(s) 259
AluBI AGCT 2 cut(s) 96, 183
AluI AGCT 2 cut(s) 96, 183
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 122
AsiGI ACCGGT 1 cut(s) 259
AspLEI GCGC 2 cut(s) 137, 217
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 99
BbrPI CACGTG 1 cut(s) 164
BbvI GCAGC 1 cut(s) 199
BclI TGATCA 1 cut(s) 274
BfaI CTAG 1 cut(s) 322
BfmI CTRYAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 1 cut(s) 213
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmrI ACTGGG 2 cut(s) 31, 211
BmsI GCATC 3 cut(s) 13, 133, 199
BmuI ACTGGG 2 cut(s) 31, 211
Bpu1102I GCTNAGC 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 139, 266
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 37, 206
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 3 cut(s) 80, 139, 266
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 2 cut(s) 37, 206
BseXI GCAGC 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 135
BshTI ACCGGT 1 cut(s) 259
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 3 cut(s) 80, 139, 266
BsmFI GGGAC 1 cut(s) 218
Bsp1407I TGTACA 1 cut(s) 302
Bsp143I GATC 1 cut(s) 274
Bsp1720I GCTNAGC 1 cut(s) 179
BspACI CCGC 2 cut(s) 133, 290
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 259
BsrGI TGTACA 1 cut(s) 302
BsrI ACTGG 2 cut(s) 37, 206
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 102
Bst4CI ACNGT 3 cut(s) 175, 307, 319
BstAPI GCANNNNNTGC 1 cut(s) 143
BstAUI TGTACA 1 cut(s) 302
BstBAI YACGTR 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 2 cut(s) 137, 217
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 213
CfoI GCGC 2 cut(s) 137, 217
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 3 cut(s) 30, 270, 303
CspAI ACCGGT 1 cut(s) 259
CviAII CATG 2 cut(s) 87, 138
CviJI RGCY 2 cut(s) 96, 183
CviKI_1 RGCY 2 cut(s) 96, 183
CviQI GTAC 3 cut(s) 30, 270, 303
DdeI CTNAG 1 cut(s) 179
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 29
Eco72I CACGTG 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 2 cut(s) 90, 141
FaiI YATR 6 cut(s) 46, 48, 55, 88, 139, 287
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 86, 137
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 322
GlaI GCGC 2 cut(s) 136, 216
GluI GCNGC 1 cut(s) 213
GsaI CCCAGC 1 cut(s) 221
HapII CCGG 1 cut(s) 260
HhaI GCGC 2 cut(s) 137, 217
Hin1II CATG 2 cut(s) 90, 141
Hin6I GCGC 2 cut(s) 135, 215
HinP1I GCGC 2 cut(s) 135, 215
HinfI GANTC 1 cut(s) 60
HpaII CCGG 1 cut(s) 260
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 71, 303
Hpy188I TCNGA 2 cut(s) 9, 121
Hpy8I GTNNAC 2 cut(s) 71, 303
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 3 cut(s) 175, 307, 319
HpyCH4IV ACGT 2 cut(s) 28, 163
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 2 cut(s) 28, 163
Hsp92II CATG 2 cut(s) 90, 141
HspAI GCGC 2 cut(s) 135, 215
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 6 cut(s) 50, 82, 187, 203, 208, 273
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 3 cut(s) 13, 133, 199
MaeI CTAG 1 cut(s) 322
MaeII ACGT 2 cut(s) 28, 163
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 1 cut(s) 31
MluCI AATT 2 cut(s) 122, 244
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 3 cut(s) 9, 160, 251
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 90, 141
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 90
PfeI GAWTC 1 cut(s) 60
PinAI ACCGGT 1 cut(s) 259
PkrI GCNGC 1 cut(s) 214
PmaCI CACGTG 1 cut(s) 164
PmlI CACGTG 1 cut(s) 164
Ppu21I YACGTR 1 cut(s) 164
PspCI CACGTG 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 96
RsaI GTAC 3 cut(s) 31, 271, 304
RsaNI GTAC 3 cut(s) 30, 270, 303
RseI CAYNNNNRTG 1 cut(s) 290
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 99
SetI ASST 8 cut(s) 31, 98, 166, 185, 227, 235, 243, 271
SfaNI GCATC 3 cut(s) 13, 133, 199
SfcI CTRYAG 1 cut(s) 91
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 2 cut(s) 122, 244
SsiI CCGC 2 cut(s) 133, 290
SspMI CTAG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 3 cut(s) 175, 307, 319
TaiI ACGT 2 cut(s) 31, 166
TaqI TCGA 5 cut(s) 58, 111, 126, 150, 186
TasI AATT 2 cut(s) 122, 244
TatI WGTACW 1 cut(s) 302
TfiI GAWTC 1 cut(s) 60
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 233
TspRI CASTG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 90
XspI CTAG 1 cut(s) 322
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.