FvH4_1g07430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013232
Physical Location & Seq
Reverse (-)
3948655 .. 3949932
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07430.t1

Sequence Viewer

Length: 999 bp
ATGGAGGACATGCGGAAGAGGCCCGGTGGTGACGTCACTCCAGACGACGCGTCGTCCTCATCCTCGTCTCCCTCCGCGAAGAGGCGGCGAGATCAGGCCGCCGAAGAATCCGCCGACATTTCCATTCCTCCGGTGTCAAACGACGTCGTCCTGCACAGCGGCGATTTCGCTCCTGTAGTCAACGCCGTCGTTTCGGTTCCTCCGGTAGCAAACGACGTCGTTACCGACAGCGGCGACGTTTCCGTTTCTCCAGCAGTCGTTGCGGCCGGCGTCGACGTCATTTCGGTTCCTCCGGTAGTGAACGACGTCATGGACGGCGGCGACGTTTCGGTTCCTCCGCCAGCGAACGACGTCGGTGCAGTCATCGTCGACGTTTGGGCTTTTCCGCCAGTGAACGACGTCGTTGCGAAAAGCGGCGGCGGCATTTCAATTCCTCCGGCAGTGAACGGCGTCGTTTCGGTCCCTCCGGTGTTCAACGACAATGACGTCATCGGAGACGTTTCGGTTCCTCCGGCAGTGAACGACGTCGTTGCAGTCATGGTCGACGTTTGGGATCCTCCGCCAGCGAACGACGTCGTTATGGCCAGCGACGACGACGAGACGCTGAGCGAGCTGACGCGCCTACTGGACTTGAACAACGCCGACGTCGCTGCTCCGGAGACGTCGTTGACGTTCGCGGAGAATCCGTCCAGGTCACCGAGGGTGTTCCAGACCATGTCCACCTCATACGTAACGATCAACGGGAACGAGGAGAGCTGCGGCTCGTCGTTCTCGGACGCCGACTCGTCGGTTATGGCCAGCGTGGACATGAGTCAGGTGTGGATGGGCGGCCACGAGTGGTACACGGCGGAGAGCGCGTGGGATATGGATGATGCTGAAATGTGGGCGCGTGAGGTAATAGAAGCACCAGAGTTAGATGCAGACTGGGACGACGCTGCGCTGGCACGGTTTCTAGGTGAAGACTTGAATCCAGACCAGCTTTTCTCCGGTACCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

34.69

Weight (kDa)

4.05

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56880
fragaria_vesca FvH4_1g07430 FvH4_1g21692
malus_domestica MD02G1079500.v1.1 MD15G1207000.v1.1
prunus_persica Prupe.7G209700_v2.0.a1
pyrus_communis pycom02g06330
rosa_laevigata RLG00000016392
rosa_multiflora Rmu_sc0005227.1_g000006 Rmu_sc0005227.1_g000007 Rmu_sc0005227.1_g000008
rosa_roxburghii Rroxscaffold_2G00148170
rosa_rugosa Rorug02G0034900
rosa_samantha Rh2AG081100 Rh2BG082200 Rh2CG084400 Rh2DG080100
rosa_wichuraiana Rw2G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 485
Acc65I GGTACC 1 cut(s) 989
AccB1I GGYRCC 1 cut(s) 989
AccI GTMKAC 3 cut(s) 273, 369, 543
AccII CGCG 6 cut(s) 50, 77, 619, 677, 857, 889
AccIII TCCGGA 1 cut(s) 655
AclWI GGATC 2 cut(s) 548, 561
AcoI YGGCCR 4 cut(s) 264, 582, 795, 829
AfaI GTAC 2 cut(s) 842, 991
AfiI CCNNNNNNNGG 1 cut(s) 81
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 4 cut(s) 429, 475, 634, 967
AhdI GACNNNNNGTC 2 cut(s) 49, 52
AjnI CCWGG 1 cut(s) 689
AluBI AGCT 3 cut(s) 613, 756, 979
AluI AGCT 3 cut(s) 613, 756, 979
Alw26I GTCTC 4 cut(s) 72, 489, 593, 653
AlwI GGATC 2 cut(s) 548, 561
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 6 cut(s) 20, 96, 264, 582, 795, 829
ApeKI GCWGC 3 cut(s) 650, 756, 935
Asp718I GGTACC 1 cut(s) 989
AspLEI GCGC 4 cut(s) 621, 857, 889, 940
AspS9I GGNCC 2 cut(s) 21, 460
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 41, 687, 968
AvaII GGWCC 1 cut(s) 460
BalI TGGCCA 2 cut(s) 584, 797
BamHI GGATCC 1 cut(s) 553
BanI GGYRCC 1 cut(s) 989
BauI CACGAG 1 cut(s) 833
BbsI GAAGAC 1 cut(s) 966
BbvI GCAGC 3 cut(s) 637, 743, 922
BccI CCATC 1 cut(s) 817
BceAI ACGGC 4 cut(s) 170, 331, 463, 861
BcgI CGANNNNNNTGC 8 cut(s) 338, 372, 386, 420, 512, 546, 632, 666
BciT130I CCWGG 1 cut(s) 691
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 4 cut(s) 72, 489, 593, 653
BfaI CTAG 1 cut(s) 953
BfmI CTRYAG 1 cut(s) 174
BlpI GCTNAGC 1 cut(s) 605
Bme1390I CCNGG 2 cut(s) 24, 691
Bme18I GGWCC 1 cut(s) 460
BmeRI GACNNNNNGTC 2 cut(s) 49, 52
BmgT120I GGNCC 2 cut(s) 21, 460
BmiI GGNNCC 7 cut(s) 198, 288, 333, 462, 507, 555, 991
BmrFI CCNGG 2 cut(s) 24, 691
BmrI ACTGGG 1 cut(s) 934
BmsI GCATC 2 cut(s) 862, 907
BmuI ACTGGG 1 cut(s) 934
BoxI GACNNNNGTC 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 966
BpmI CTGGAG 2 cut(s) 24, 234
Bpu1102I GCTNAGC 1 cut(s) 605
BpuMI CCSGG 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 730
BsaJI CCNNGG 1 cut(s) 698
BsaWI WCCGGW 6 cut(s) 130, 202, 292, 466, 655, 986
BsaXI ACNNNNNCTCC 6 cut(s) 650, 671, 680, 701, 842, 872
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 3 cut(s) 389, 630, 929
BseAI TCCGGA 1 cut(s) 655
BseBI CCWGG 1 cut(s) 691
BseDI CCNNGG 1 cut(s) 698
BseGI GGATG 3 cut(s) 59, 828, 874
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 3 cut(s) 389, 630, 929
BseRI GAGGAG 1 cut(s) 764
BseX3I CGGCCG 1 cut(s) 264
BseXI GCAGC 3 cut(s) 637, 743, 922
BsgI GTGCAG 2 cut(s) 137, 378
Bsh1236I CGCG 6 cut(s) 50, 77, 619, 677, 857, 889
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 6 cut(s) 22, 98, 266, 584, 797, 831
BshNI GGYRCC 1 cut(s) 989
BsiEI CGRYCG 1 cut(s) 267
BslFI GGGAC 2 cut(s) 446, 941
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 4 cut(s) 72, 489, 593, 653
BsmBI CGTCTC 4 cut(s) 72, 489, 593, 653
BsmFI GGGAC 2 cut(s) 446, 941
BsnI GGCC 6 cut(s) 22, 98, 266, 584, 797, 831
Bsp13I TCCGGA 1 cut(s) 655
Bsp143I GATC 3 cut(s) 91, 553, 735
Bsp1720I GCTNAGC 1 cut(s) 605
BspANI GGCC 6 cut(s) 22, 98, 266, 584, 797, 831
BspCNI CTCAG 1 cut(s) 597
BspEI TCCGGA 1 cut(s) 655
BspFNI CGCG 6 cut(s) 50, 77, 619, 677, 857, 889
BspLI GGNNCC 7 cut(s) 198, 288, 333, 462, 507, 555, 991
BspPI GGATC 2 cut(s) 548, 561
BspT107I GGYRCC 1 cut(s) 989
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 3 cut(s) 389, 630, 929
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 698
BssMI GATC 3 cut(s) 91, 553, 735
BssSI CACGAG 1 cut(s) 833
Bst2BI CACGAG 1 cut(s) 833
Bst2UI CCWGG 1 cut(s) 691
Bst4CI ACNGT 1 cut(s) 948
Bst6I CTCTTC 2 cut(s) 11, 74
BstAPI GCANNNNNTGC 1 cut(s) 260
BstBAI YACGTR 1 cut(s) 730
BstC8I GCNNGC 7 cut(s) 268, 342, 564, 586, 611, 799, 942
BstDEI CTNAG 1 cut(s) 605
BstEII GGTNACC 1 cut(s) 693
BstF5I GGATG 3 cut(s) 59, 828, 874
BstFNI CGCG 6 cut(s) 50, 77, 619, 677, 857, 889
BstHHI GCGC 4 cut(s) 621, 857, 889, 940
BstKTI GATC 3 cut(s) 94, 556, 738
BstMAI GTCTC 4 cut(s) 72, 489, 593, 653
BstMBI GATC 3 cut(s) 91, 553, 735
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 7 cut(s) 19, 260, 420, 610, 647, 854, 941
BstNI CCWGG 1 cut(s) 691
BstNSI RCATGY 1 cut(s) 13
BstPAI GACNNNNGTC 1 cut(s) 810
BstPI GGTNACC 1 cut(s) 693
BstSCI CCNGG 2 cut(s) 22, 689
BstSFI CTRYAG 1 cut(s) 174
BstSNI TACGTA 1 cut(s) 730
BstUI CGCG 6 cut(s) 50, 77, 619, 677, 857, 889
BstV1I GCAGC 3 cut(s) 637, 743, 922
BstV2I GAAGAC 1 cut(s) 966
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BstZI CGGCCG 1 cut(s) 264
BsuRI GGCC 6 cut(s) 22, 98, 266, 584, 797, 831
BtsCI GGATG 3 cut(s) 59, 828, 874
BtsI GCAGTG 2 cut(s) 447, 522
BtsIMutI CAGTG 3 cut(s) 396, 447, 522
Cac8I GCNNGC 7 cut(s) 268, 342, 564, 586, 611, 799, 942
CfoI GCGC 4 cut(s) 621, 857, 889, 940
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 21, 460
CseI GACGC 8 cut(s) 39, 56, 259, 439, 610, 625, 785, 941
Csp6I GTAC 2 cut(s) 841, 990
CviAII CATG 5 cut(s) 10, 310, 538, 715, 808
CviQI GTAC 2 cut(s) 841, 990
DdeI CTNAG 1 cut(s) 605
DpnI GATC 3 cut(s) 93, 555, 737
DpnII GATC 3 cut(s) 91, 553, 735
DrdI GACNNNNNNGTC 1 cut(s) 485
DriI GACNNNNNGTC 2 cut(s) 49, 52
DseDI GACNNNNNNGTC 1 cut(s) 485
EaeI YGGCCR 4 cut(s) 264, 582, 795, 829
EagI CGGCCG 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 11, 74
Eam1105I GACNNNNNGTC 2 cut(s) 49, 52
EarI CTCTTC 2 cut(s) 11, 74
EciI GGCGGA 5 cut(s) 100, 327, 375, 549, 863
EclXI CGGCCG 1 cut(s) 264
Eco105I TACGTA 1 cut(s) 730
Eco47I GGWCC 1 cut(s) 460
Eco52I CGGCCG 1 cut(s) 264
Eco91I GGTNACC 1 cut(s) 693
EcoO65I GGTNACC 1 cut(s) 693
EcoRII CCWGG 1 cut(s) 689
Esp3I CGTCTC 4 cut(s) 72, 489, 593, 653
FaeI CATG 5 cut(s) 13, 313, 541, 718, 811
FaiI YATR 9 cut(s) 11, 311, 539, 581, 716, 727, 794, 809, 866
FaqI GGGAC 2 cut(s) 446, 941
FatI CATG 5 cut(s) 9, 309, 537, 714, 807
FblI GTMKAC 3 cut(s) 273, 369, 543
FokI GGATG 3 cut(s) 46, 835, 881
FspBI CTAG 1 cut(s) 953
GlaI GCGC 4 cut(s) 620, 856, 888, 939
GsuI CTGGAG 2 cut(s) 24, 234
HaeIII GGCC 6 cut(s) 22, 98, 266, 584, 797, 831
HgaI GACGC 8 cut(s) 39, 56, 259, 439, 610, 625, 785, 941
HhaI GCGC 4 cut(s) 621, 857, 889, 940
Hin1II CATG 5 cut(s) 13, 313, 541, 718, 811
Hin6I GCGC 4 cut(s) 619, 855, 887, 938
HinP1I GCGC 4 cut(s) 619, 855, 887, 938
HincII GTYRAC 5 cut(s) 181, 274, 370, 544, 669
HindII GTYRAC 5 cut(s) 181, 274, 370, 544, 669
HinfI GANTC 5 cut(s) 107, 682, 782, 811, 967
HphI GGTGA 3 cut(s) 41, 687, 968
Hpy188I TCNGA 2 cut(s) 494, 775
Hpy188III TCNNGA 4 cut(s) 41, 656, 709, 971
HpyCH4III ACNGT 1 cut(s) 948
HpyCH4V TGCA 4 cut(s) 154, 359, 533, 920
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 260, 420, 610, 647, 854, 941
HpyF3I CTNAG 1 cut(s) 605
Hsp92II CATG 5 cut(s) 13, 313, 541, 718, 811
HspAI GCGC 4 cut(s) 619, 855, 887, 938
Kpn2I TCCGGA 1 cut(s) 655
KpnI GGTACC 1 cut(s) 993
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Kzo9I GATC 3 cut(s) 91, 553, 735
LmnI GCTCC 2 cut(s) 175, 658
Lsp1109I GCAGC 3 cut(s) 637, 743, 922
LweI GCATC 2 cut(s) 862, 907
MaeI CTAG 1 cut(s) 953
MaeIII GTNAC 5 cut(s) 29, 34, 220, 693, 730
MalI GATC 3 cut(s) 93, 555, 737
MboI GATC 3 cut(s) 91, 553, 735
MboII GAAGA 4 cut(s) 28, 91, 116, 971
MflI RGATCY 1 cut(s) 553
MlsI TGGCCA 2 cut(s) 584, 797
MluCI AATT 2 cut(s) 429, 994
MluI ACGCGT 1 cut(s) 48
MluNI TGGCCA 2 cut(s) 584, 797
MlyI GAGTC 2 cut(s) 776, 820
Mox20I TGGCCA 2 cut(s) 584, 797
MroI TCCGGA 1 cut(s) 655
MroNI GCCGGC 1 cut(s) 266
MscI TGGCCA 2 cut(s) 584, 797
MseI TTAA 1 cut(s) 997
Msp20I TGGCCA 2 cut(s) 584, 797
MspA1I CMGCKG 2 cut(s) 159, 231
MspR9I CCNGG 2 cut(s) 24, 691
MvaI CCWGG 1 cut(s) 691
MvnI CGCG 6 cut(s) 50, 77, 619, 677, 857, 889
MwoI GCNNNNNNNGC 7 cut(s) 19, 260, 420, 610, 647, 854, 941
NaeI GCCGGC 1 cut(s) 268
NciI CCSGG 1 cut(s) 24
NdeII GATC 3 cut(s) 91, 553, 735
NgoMIV GCCGGC 1 cut(s) 266
NlaIII CATG 5 cut(s) 13, 313, 541, 718, 811
NlaIV GGNNCC 7 cut(s) 198, 288, 333, 462, 507, 555, 991
NmuCI GTSAC 3 cut(s) 29, 34, 693
NspI RCATGY 1 cut(s) 13
PcsI WCGNNNNNNNCGW 4 cut(s) 222, 321, 483, 668
PdiI GCCGGC 1 cut(s) 268
PfeI GAWTC 3 cut(s) 107, 682, 967
PflFI GACNNNGTC 2 cut(s) 146, 715
PleI GAGTC 2 cut(s) 776, 819
PpsI GAGTC 2 cut(s) 776, 819
Ppu21I YACGTR 1 cut(s) 730
PshAI GACNNNNGTC 1 cut(s) 810
Psp6I CCWGG 1 cut(s) 689
PspEI GGTNACC 1 cut(s) 693
PspGI CCWGG 1 cut(s) 689
PspN4I GGNNCC 7 cut(s) 198, 288, 333, 462, 507, 555, 991
PspPI GGNCC 2 cut(s) 21, 460
PsuI RGATCY 1 cut(s) 553
PsyI GACNNNGTC 2 cut(s) 146, 715
RsaI GTAC 2 cut(s) 842, 991
RsaNI GTAC 2 cut(s) 841, 990
SalI GTCGAC 3 cut(s) 272, 368, 542
SaqAI TTAA 1 cut(s) 997
Sau3AI GATC 3 cut(s) 91, 553, 735
Sau96I GGNCC 2 cut(s) 21, 460
SchI GAGTC 2 cut(s) 776, 820
ScrFI CCNGG 2 cut(s) 24, 691
SfaNI GCATC 2 cut(s) 862, 907
SfcI CTRYAG 1 cut(s) 174
SgrDI CGTCGACG 2 cut(s) 272, 368
SinI GGWCC 1 cut(s) 460
SnaBI TACGTA 1 cut(s) 730
Sse9I AATT 2 cut(s) 429, 994
SspMI CTAG 1 cut(s) 953
StyD4I CCNGG 2 cut(s) 22, 689
TaaI ACNGT 1 cut(s) 948
TaqI TCGA 3 cut(s) 273, 369, 543
TaqII GACCGA 1 cut(s) 448
TasI AATT 2 cut(s) 429, 994
TfiI GAWTC 3 cut(s) 107, 682, 967
Tru1I TTAA 1 cut(s) 997
Tru9I TTAA 1 cut(s) 997
TscAI CASTG 3 cut(s) 396, 447, 522
TseFI GTSAC 3 cut(s) 29, 34, 693
TseI GCWGC 3 cut(s) 650, 756, 935
Tsp45I GTSAC 3 cut(s) 29, 34, 693
TspGWI ACGGA 2 cut(s) 232, 675
TspRI CASTG 3 cut(s) 396, 447, 522
Tth111I GACNNNGTC 2 cut(s) 146, 715
VpaK11BI GGWCC 1 cut(s) 460
XceI RCATGY 1 cut(s) 13
XmiI GTMKAC 3 cut(s) 273, 369, 543
XspI CTAG 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.