MD02G1079500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0013232
Physical Location & Seq
Reverse (-)
6269690 .. 6270331
642 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1079500.v1.1.491

Sequence Viewer

Length: 642 bp
ATGGAGGACATGCGCAAGAGACCCGGAAGCGAACCGGCGGAGGAGGACGGGAGCGCCGCGAAGAAGCAGCGACATCTGGGGGCGGAGCAAGTGATAAGCGACGACTTTGAGACTGTGCCCTCCAAGGCAAAGGACGGGAAGCTCGAGGAGCTCGCGAAGCTCGTGAACAAAGACTGGCCGATCGTGCCCGCTGCAGGTGCCGCAGCGGTGACTTTCGTCGAGAACCCGTACTCGCAGCCATGGGTGTTCCAAGCGCTGCCGTCGTCATACGTCACGATCAATCTCAACGAGGAGAGCTGCGGGCCGTCGTTCTCTGACTCGGTGTCGACGGTCATGGCGAGCGTCGACCTGGGCGGCGGGTTGTACGGCATTTCGAAGGAGGTGCTGGGGTTGGAGTCTGAGAAGTGGTTGATGGAGGAGGTGGAGGAGGCTGGCGGTTTGTACGGACTTACAAAGGAGGTTGCCGATTTGGAATCTTTGAAGTTGGTAATGGCGGAGGAGAAAGAGGTGAGTGAGTTCGGCGGTACGTCTGGTGAAACAAAAGAGTTGGCTCGTGGTGGTTGGGCGGGGGTGGAGATGGACTGGGACGATGCTGCGCTGGCGAGGTTTATCGGGGAAGACGGAGACTTACCTGACGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

22.85

Weight (kDa)

4.25

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56880
fragaria_vesca FvH4_1g07430 FvH4_1g21692
malus_domestica MD02G1079500.v1.1 MD15G1207000.v1.1
prunus_persica Prupe.7G209700_v2.0.a1
pyrus_communis pycom02g06330
rosa_laevigata RLG00000016392
rosa_multiflora Rmu_sc0005227.1_g000006 Rmu_sc0005227.1_g000007 Rmu_sc0005227.1_g000008
rosa_roxburghii Rroxscaffold_2G00148170
rosa_rugosa Rorug02G0034900
rosa_samantha Rh2AG081100 Rh2BG082200 Rh2CG084400 Rh2DG080100
rosa_wichuraiana Rw2G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 185
Acc16I TGCGCA 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 2 cut(s) 326, 345
AccII CGCG 2 cut(s) 59, 155
AcoI YGGCCR 1 cut(s) 176
AfaI GTAC 4 cut(s) 230, 365, 443, 526
AfeI AGCGCT 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 481
AhdI GACNNNNNGTC 1 cut(s) 322
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 4 cut(s) 142, 151, 160, 297
AluI AGCT 4 cut(s) 142, 151, 160, 297
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 3 cut(s) 13, 104, 618
Ama87I CYCGRG 1 cut(s) 143
Aor51HI AGCGCT 1 cut(s) 255
AoxI GGCC 2 cut(s) 176, 302
ApeKI GCWGC 7 cut(s) 67, 191, 203, 235, 256, 297, 593
AspLEI GCGC 4 cut(s) 15, 56, 256, 598
AspS9I GGNCC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 220, 520, 545
AsuII TTCGAA 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 143
BaeGI GKGCMC 2 cut(s) 120, 189
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 153
BauI CACGAG 2 cut(s) 161, 552
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 7 cut(s) 79, 178, 215, 243, 247, 284, 580
BccI CCATC 2 cut(s) 406, 571
BceAI ACGGC 3 cut(s) 244, 289, 382
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciT130I CCWGG 1 cut(s) 350
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 3 cut(s) 13, 104, 618
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 2 cut(s) 57, 257
BfuAI ACCTGC 1 cut(s) 185
Bme1390I CCNGG 2 cut(s) 24, 350
BmeRI GACNNNNNGTC 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 24, 350
BmrI ACTGGG 1 cut(s) 592
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 592
BoxI GACNNNNGTC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 624
Bpu14I TTCGAA 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 3 cut(s) 123, 239, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 179, 587
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 123, 239, 349
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 179, 587
BseRI GAGGAG 6 cut(s) 56, 161, 305, 431, 440, 512
BseSI GKGCMC 2 cut(s) 120, 189
BseXI GCAGC 7 cut(s) 79, 178, 215, 243, 247, 284, 580
BseYI CCCAGC 1 cut(s) 385
Bsh1236I CGCG 2 cut(s) 59, 155
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 178, 304
BshNI GGYRCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 2 cut(s) 24, 35
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 3 cut(s) 13, 104, 618
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 2 cut(s) 178, 304
Bso31I GGTCTC 1 cut(s) 13
BsoBI CYCGRG 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 120, 153, 189
Bsp143I GATC 2 cut(s) 180, 276
Bsp19I CCATGG 1 cut(s) 239
Bsp68I TCGCGA 1 cut(s) 155
BspANI GGCC 2 cut(s) 178, 304
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 2 cut(s) 59, 155
BspLI GGNNCC 1 cut(s) 199
BspMAI CTGCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 2 cut(s) 179, 587
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 123, 239, 349
BssMI GATC 2 cut(s) 180, 276
BssSI CACGAG 2 cut(s) 161, 552
BssT1I CCWWGG 2 cut(s) 123, 239
Bst2BI CACGAG 2 cut(s) 161, 552
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 115, 331
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 6 cut(s) 153, 189, 302, 340, 433, 600
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 239
BstFNI CGCG 2 cut(s) 59, 155
BstH2I RGCGCY 2 cut(s) 57, 257
BstHHI GCGC 4 cut(s) 15, 56, 256, 598
BstKTI GATC 2 cut(s) 183, 279
BstMAI GTCTC 3 cut(s) 13, 104, 618
BstMBI GATC 2 cut(s) 180, 276
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 6 cut(s) 148, 157, 184, 197, 200, 599
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 13
BstPAI GACNNNNGTC 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 22, 348
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 2 cut(s) 120, 189
BstUI CGCG 2 cut(s) 59, 155
BstV1I GCAGC 7 cut(s) 79, 178, 215, 243, 247, 284, 580
BstV2I GAAGAC 1 cut(s) 624
BsuRI GGCC 2 cut(s) 178, 304
BtgI CCRYGG 1 cut(s) 239
BtuMI TCGCGA 1 cut(s) 155
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 6 cut(s) 153, 189, 302, 340, 433, 600
CfoI GCGC 4 cut(s) 15, 56, 256, 598
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 302
CseI GACGC 1 cut(s) 331
Csp6I GTAC 4 cut(s) 229, 364, 442, 525
CviAII CATG 3 cut(s) 10, 240, 334
CviJI RGCY 9 cut(s) 142, 151, 160, 178, 238, 297, 304, 431, 551
CviKI_1 RGCY 9 cut(s) 142, 151, 160, 178, 238, 297, 304, 431, 551
CviQI GTAC 4 cut(s) 229, 364, 442, 525
DdeI CTNAG 1 cut(s) 399
DpnI GATC 2 cut(s) 182, 278
DpnII GATC 2 cut(s) 180, 276
DriI GACNNNNNGTC 1 cut(s) 322
EaeI YGGCCR 1 cut(s) 176
Eam1105I GACNNNNNGTC 1 cut(s) 322
EciI GGCGGA 3 cut(s) 53, 98, 509
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 123, 239
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 13
Eco47III AGCGCT 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 2 cut(s) 123, 239
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 2 cut(s) 123, 239
FaeI CATG 3 cut(s) 13, 243, 337
FaiI YATR 4 cut(s) 11, 241, 268, 335
FaqI GGGAC 1 cut(s) 599
FatI CATG 3 cut(s) 9, 239, 333
FauI CCCGC 4 cut(s) 196, 293, 350, 559
FblI GTMKAC 2 cut(s) 326, 345
FriOI GRGCYC 1 cut(s) 153
FspI TGCGCA 1 cut(s) 14
GlaI GCGC 4 cut(s) 14, 55, 255, 597
GsaI CCCAGC 1 cut(s) 389
HaeII RGCGCY 2 cut(s) 57, 257
HaeIII GGCC 2 cut(s) 178, 304
HapII CCGG 2 cut(s) 24, 35
HgaI GACGC 1 cut(s) 331
HhaI GCGC 4 cut(s) 15, 56, 256, 598
Hin1II CATG 3 cut(s) 13, 243, 337
Hin6I GCGC 4 cut(s) 13, 54, 254, 596
HinP1I GCGC 4 cut(s) 13, 54, 254, 596
HincII GTYRAC 2 cut(s) 327, 346
HindII GTYRAC 2 cut(s) 327, 346
HinfI GANTC 3 cut(s) 317, 395, 473
HpaII CCGG 2 cut(s) 24, 35
HphI GGTGA 3 cut(s) 220, 520, 545
Hpy166II GTNNAC 3 cut(s) 166, 327, 346
Hpy188I TCNGA 2 cut(s) 316, 400
Hpy188III TCNNGA 4 cut(s) 154, 163, 220, 274
Hpy8I GTNNAC 3 cut(s) 166, 327, 346
Hpy99I CGWCG 6 cut(s) 104, 221, 265, 310, 331, 347
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 2 cut(s) 115, 331
HpyCH4IV ACGT 2 cut(s) 270, 527
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 157, 184, 197, 200, 599
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 2 cut(s) 270, 527
Hsp92II CATG 3 cut(s) 13, 243, 337
HspAI GCGC 4 cut(s) 13, 54, 254, 596
Kzo9I GATC 2 cut(s) 180, 276
LmnI GCTCC 3 cut(s) 51, 85, 148
Lsp1109I GCAGC 7 cut(s) 79, 178, 215, 243, 247, 284, 580
LweI GCATC 1 cut(s) 580
MaeII ACGT 2 cut(s) 270, 527
MaeIII GTNAC 2 cut(s) 208, 271
MalI GATC 2 cut(s) 182, 278
MboI GATC 2 cut(s) 180, 276
MboII GAAGA 2 cut(s) 73, 629
MhlI GDGCHC 3 cut(s) 120, 153, 189
MlyI GAGTC 2 cut(s) 311, 404
MmeI TCCRAC 1 cut(s) 372
MspA1I CMGCKG 2 cut(s) 191, 206
MspI CCGG 2 cut(s) 24, 35
MspR9I CCNGG 2 cut(s) 24, 350
MvaI CCWGG 1 cut(s) 350
MvnI CGCG 2 cut(s) 59, 155
MwoI GCNNNNNNNGC 6 cut(s) 148, 157, 184, 197, 200, 599
NciI CCSGG 1 cut(s) 24
NcoI CCATGG 1 cut(s) 239
NdeII GATC 2 cut(s) 180, 276
NlaIII CATG 3 cut(s) 13, 243, 337
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 208, 271
NruI TCGCGA 1 cut(s) 155
NsbI TGCGCA 1 cut(s) 14
NspI RCATGY 1 cut(s) 13
NspV TTCGAA 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 143
PaqCI CACCTGC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 3 cut(s) 141, 159, 335
PfeI GAWTC 1 cut(s) 473
Ple19I CGATCG 1 cut(s) 183
PleI GAGTC 2 cut(s) 311, 403
PpsI GAGTC 2 cut(s) 311, 403
PshAI GACNNNNGTC 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 302
PspXI VCTCGAGB 1 cut(s) 143
PstI CTGCAG 1 cut(s) 196
PvuI CGATCG 1 cut(s) 183
RruI TCGCGA 1 cut(s) 155
RsaI GTAC 4 cut(s) 230, 365, 443, 526
RsaNI GTAC 4 cut(s) 229, 364, 442, 525
SacI GAGCTC 1 cut(s) 153
SalI GTCGAC 2 cut(s) 325, 344
Sau3AI GATC 2 cut(s) 180, 276
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 2 cut(s) 311, 404
ScrFI CCNGG 2 cut(s) 24, 350
SduI GDGCHC 3 cut(s) 120, 153, 189
SfaNI GCATC 1 cut(s) 580
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 143
SfuI TTCGAA 1 cut(s) 374
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 22, 348
StyI CCWWGG 2 cut(s) 123, 239
TaaI ACNGT 2 cut(s) 115, 331
TaiI ACGT 2 cut(s) 273, 530
TaqI TCGA 5 cut(s) 144, 219, 326, 345, 374
TauI GCSGC 3 cut(s) 59, 203, 357
TfiI GAWTC 1 cut(s) 473
TseFI GTSAC 2 cut(s) 208, 271
TseI GCWGC 7 cut(s) 67, 191, 203, 235, 256, 297, 593
Tsp45I GTSAC 2 cut(s) 208, 271
TspGWI ACGGA 2 cut(s) 459, 636
XceI RCATGY 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 143
XmiI GTMKAC 2 cut(s) 326, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.