Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009224

Physical Location & Seq

Genomic Coordinates Reverse (-)

23038389 .. 23041617

Gene Structure 3229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGATGCATTTGATTTTGAGCTGCAGCTATTTAATATCAATGGATGGATATTACAATGAAGCTTCTGAAGAACCTTCTTCGTCTTCTTCTTCTGGAAGTTTAGCTAGGAGCTTGTTCCATGAGTATCGCCAATCCGTTATCCCGCTCCAAAATGGGCATGTGCCAAGCATGGCGTTCATGAACAATCTTCCATACGTAGAAATTCGACCACAAGAGAGTCAAAGACTTGCTTTTAACGACACACAACGTCTCTTCTATCAGATGAAAATTGAAGCAAGTCTTCGAGAATGGTTCCCTGAAGATTTCAATAGAAAGTCTTCTCCGGCAAACTCCGATTATCTCCGGCCACCTCATTATCCCTCTTCATCGTCTTCTTCTCTTAGTCCCAACAACATCTCCGAATATTCCTCTCTTTTGTTCCCACTCATCCCTAAACCTTCAACGACGACTGAGGCCGTTAACGTTCCGGTACTTCCACCGCTAGCTCCGATCAATATGATCCATCCACAGCATCAAGAGCCTTTATTCCGTAACCGTCAACGTGAGGAAGAAGCAATGACGCAAGCAATCTTAGCGGTTTTAACGGGGCCATCAAGTCCTCCGTCAACTTCTTCCTCGCCGCAGCGTAAAGGAAGAGCCACCGCTTTTAAGAGATATTACTCCATGATTAGTGACCGCGGTAGAGCCCCGCTTCCGAGTGTTCGGAAGCAAAGTATGATGACAAGAGCGATGTCCTTCTACAATAGGCTTAACATTAACCAGAGAGAGCGTTTTACTAGGGAAAACGCTACTACACACGGCGAGGGAAGCGGTGGAAGTGGAGGGGGTGGACGTTATACTAGCGGGCCAAGCGCAACGCAACTGCAACATATGATATCGGAGAGGAAACGGCGAGAGAAGCTTAATGAGAGCTTTCAAGCATTGAGATCTCTCCTTCCTCCCGGAACTAAGAAAGATAAAGCATCGGTCCTCTCCATTGCAAGAGAGCAACTATCTTCTTTGCAAGGTGAGATTTCGAAACTACTAGAGAGAAATCGGGAGGTAGAGGCAAAGCTAGCAGGAGAAAGAGAGATTGAAAATGATTTACGACCCGAAGAGAGGTTTAACGTTCGTATAAGACATATACCTGAATCAACATCTAGAGAGAGGACTTTGGATCTACGAGTTGTTCTAAGGGGAGACATCATTAGGGTTGATGATTTGATGATAAGACTTCTCGAATTCTTGAAGCAAATCAACAATGTGAGCTTAGTGTCAATCGAAGCTCGAACTCTAGCTAGAGCAGAGGGGGATACTTCAATTGTTCTTGTGATCAGCTTAAGGCTCAAGATTGAGGGTGAATGGGACGAATCAGCCTTCCAAGAAGCAGTCAGAAGGGTTGTTGCTGACTTGGCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

466

Amino Acids

52.74

Weight (kDa)

9.36

Isoelectric Point (pI)

66.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7050	PF23133	14 - 90	1.7e-20	Domain of unknown function (DUF7050)
HLH	PF00010	290 - 335	1.8e-10	Helix-loop-helix DNA-binding domain
DUF7049	PF23132	365 - 464	1.1e-25	Domain of unknown function (DUF7049)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56960 AT5G56960
fragaria_vesca	FvH4_1g07710 FvH4_1g07710 FvH4_1g07710
malus_domestica	MD02G1081600.v1.1 MD15G1208900.v1.1
prunus_persica	Prupe.7G207500_v2.0.a1
pyrus_communis	pycom02g06440 pycom15g18520
rosa_chinensis	RchiOBHm_Chr2g0093571
rosa_laevigata	RLG00000016419
rosa_multiflora	Rmu_sc0006964.1_g000006 Rmu_sc0024845.1_g000001 Rmu_sc0024846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147970
rosa_rugosa	Rorug02G0037700
rosa_samantha	Rh2AG084200 Rh2BG084800 Rh2CG087100 Rh2DG082800
rosa_wichuraiana	Rw2G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	145
AccII	CGCG	1 cut(s)	678
AclI	AACGTT	2 cut(s)	462, 1107
AclWI	GGATC	2 cut(s)	493, 1164
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	2 cut(s)	201, 1220
AcuI	CTGAAG	2 cut(s)	87, 318
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	1 cut(s)	1098
AflII	CTTAAG	1 cut(s)	1318
AgsI	TTSAA	7 cut(s)	272, 307, 441, 917, 1076, 1228, 1299
Alw26I	GTCTC	2 cut(s)	254, 1173
AlwI	GGATC	2 cut(s)	493, 1164
AoxI	GGCC	4 cut(s)	344, 453, 587, 845
ApeKI	GCWGC	3 cut(s)	21, 24, 622
ApoI	RAATTY	2 cut(s)	201, 1220
Asp700I	GAANNNNTTC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	854
AspS9I	GGNCC	3 cut(s)	587, 845, 967
AsuC2I	CCSGG	1 cut(s)	942
AsuHPI	GGTGA	2 cut(s)	1019, 1349
AsuII	TTCGAA	1 cut(s)	1016
AsuNHI	GCTAGC	2 cut(s)	481, 1054
AvaII	GGWCC	1 cut(s)	967
BanII	GRGCYC	1 cut(s)	688
BbsI	GAAGAC	4 cut(s)	75, 272, 309, 363
BbvI	GCAGC	3 cut(s)	8, 36, 634
BccI	CCATC	3 cut(s)	38, 510, 598
BceAI	ACGGC	3 cut(s)	440, 814, 905
BciVI	GTATCC	1 cut(s)	1285
BclI	TGATCA	1 cut(s)	1311
BcnI	CCSGG	1 cut(s)	942
BcoDI	GTCTC	2 cut(s)	254, 1173
BfaI	CTAG	9 cut(s)	105, 482, 777, 840, 1025, 1055, 1140, 1274, 1278
BfmI	CTRYAG	1 cut(s)	22
BfrI	CTTAAG	1 cut(s)	1318
BfuI	GTATCC	1 cut(s)	1285
BglII	AGATCT	1 cut(s)	926
BisI	GCNGC	4 cut(s)	22, 25, 620, 623
BlsI	GCNGC	4 cut(s)	23, 26, 621, 624
Bme1390I	CCNGG	1 cut(s)	942
Bme18I	GGWCC	1 cut(s)	967
BmgT120I	GGNCC	3 cut(s)	587, 845, 967
BmiI	GGNNCC	2 cut(s)	293, 588
BmrFI	CCNGG	1 cut(s)	942
BmsI	GCATC	2 cut(s)	520, 971
BmtI	GCTAGC	2 cut(s)	485, 1058
BpiI	GAAGAC	4 cut(s)	75, 272, 309, 363
Bpu14I	TTCGAA	1 cut(s)	1016
BpuEI	CTTGAG	1 cut(s)	1310
BpuMI	CCSGG	1 cut(s)	942
BsaAI	YACGTR	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	676
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	1098
Bse3DI	GCAATG	2 cut(s)	561, 975
BseDI	CCNNGG	1 cut(s)	676
BseGI	GGATG	3 cut(s)	49, 426, 502
BseLI	CCNNNNNNNGG	1 cut(s)	1098
BseMI	GCAATG	2 cut(s)	561, 975
BseMII	CTCAG	1 cut(s)	441
BseXI	GCAGC	3 cut(s)	8, 36, 634
Bsh1236I	CGCG	1 cut(s)	678
BshFI	GGCC	4 cut(s)	346, 455, 589, 847
BsiSI	CCGG	4 cut(s)	323, 343, 467, 942
BslFI	GGGAC	2 cut(s)	369, 1358
BslI	CCNNNNNNNGG	1 cut(s)	1098
BsmAI	GTCTC	2 cut(s)	254, 1173
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	369, 1358
BsnI	GGCC	4 cut(s)	346, 455, 589, 847
Bsp119I	TTCGAA	1 cut(s)	1016
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	5 cut(s)	489, 498, 926, 1156, 1311
BspANI	GGCC	4 cut(s)	346, 455, 589, 847
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	678
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	293, 588
BspMAI	CTGCAG	1 cut(s)	26
BspOI	GCTAGC	2 cut(s)	485, 1058
BspPI	GGATC	2 cut(s)	493, 1164
BspQI	GCTCTTC	1 cut(s)	628
BspT104I	TTCGAA	1 cut(s)	1016
BspTI	CTTAAG	1 cut(s)	1318
BsrBI	CCGCTC	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	561, 975
BssECI	CCNNGG	1 cut(s)	676
BssMI	GATC	5 cut(s)	489, 498, 926, 1156, 1311
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	4 cut(s)	257, 367, 628, 1089
BstAFI	CTTAAG	1 cut(s)	1318
BstBAI	YACGTR	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	1016
BstC8I	GCNNGC	4 cut(s)	483, 564, 845, 1056
BstDEI	CTNAG	6 cut(s)	380, 450, 571, 948, 1172, 1249
BstDSI	CCRYGG	1 cut(s)	676
BstF5I	GGATG	3 cut(s)	49, 426, 502
BstFNI	CGCG	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	854
BstKTI	GATC	5 cut(s)	492, 501, 929, 1159, 1314
BstMAI	GTCTC	2 cut(s)	254, 1173
BstMBI	GATC	5 cut(s)	489, 498, 926, 1156, 1311
BstMWI	GCNNNNNNNGC	7 cut(s)	517, 572, 807, 849, 898, 1055, 1391
BstNSI	RCATGY	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	940
BstSFI	CTRYAG	1 cut(s)	22
BstSNI	TACGTA	1 cut(s)	196
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	3 cut(s)	8, 36, 634
BstV2I	GAAGAC	4 cut(s)	75, 272, 309, 363
BstX2I	RGATCY	2 cut(s)	926, 1156
BstYI	RGATCY	2 cut(s)	926, 1156
BsuI	GTATCC	1 cut(s)	1285
BsuRI	GGCC	4 cut(s)	346, 455, 589, 847
BtgI	CCRYGG	1 cut(s)	676
BtgZI	GCGATG	1 cut(s)	743
BtsCI	GGATG	3 cut(s)	49, 426, 502
BtsIMutI	CAGTG	1 cut(s)	1396
Cac8I	GCNNGC	4 cut(s)	483, 564, 845, 1056
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	1 cut(s)	854
Cfr13I	GGNCC	3 cut(s)	587, 845, 967
Cfr42I	CCGCGG	1 cut(s)	679
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	5 cut(s)	119, 158, 169, 178, 664
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	6 cut(s)	380, 450, 571, 948, 1172, 1249
DpnI	GATC	5 cut(s)	491, 500, 928, 1158, 1313
DpnII	GATC	5 cut(s)	489, 498, 926, 1156, 1311
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	4 cut(s)	257, 367, 628, 1089
EarI	CTCTTC	4 cut(s)	257, 367, 628, 1089
Eco105I	TACGTA	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	688
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	1 cut(s)	967
Eco57I	CTGAAG	2 cut(s)	87, 318
EcoRI	GAATTC	1 cut(s)	1220
EcoRV	GATATC	1 cut(s)	876
EcoT22I	ATGCAT	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	5 cut(s)	122, 161, 172, 181, 667
FalI	AAGNNNNNCTT	4 cut(s)	214, 246, 264, 296
FaqI	GGGAC	2 cut(s)	369, 1358
FatI	CATG	5 cut(s)	118, 157, 168, 177, 663
FauI	CCCGC	3 cut(s)	150, 696, 836
FauNDI	CATATG	1 cut(s)	870
FbaI	TGATCA	1 cut(s)	1311
Fnu4HI	GCNGC	4 cut(s)	22, 25, 620, 623
FokI	GGATG	3 cut(s)	56, 413, 489
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	4 cut(s)	22, 25, 620, 623
FspBI	CTAG	9 cut(s)	105, 482, 777, 840, 1025, 1055, 1140, 1274, 1278
GlaI	GCGC	1 cut(s)	853
GluI	GCNGC	4 cut(s)	22, 25, 620, 623
HaeIII	GGCC	4 cut(s)	346, 455, 589, 847
HapII	CCGG	4 cut(s)	323, 343, 467, 942
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	1 cut(s)	854
Hin1II	CATG	5 cut(s)	122, 161, 172, 181, 667
Hin6I	GCGC	1 cut(s)	852
HinP1I	GCGC	1 cut(s)	852
HincII	GTYRAC	3 cut(s)	460, 539, 606
HindII	GTYRAC	3 cut(s)	460, 539, 606
HindIII	AAGCTT	2 cut(s)	60, 899
HinfI	GANTC	3 cut(s)	217, 1130, 1349
HpaI	GTTAAC	1 cut(s)	460
HpaII	CCGG	4 cut(s)	323, 343, 467, 942
HphI	GGTGA	2 cut(s)	1019, 1349
Hpy166II	GTNNAC	4 cut(s)	460, 539, 606, 830
Hpy188I	TCNGA	9 cut(s)	67, 261, 334, 400, 489, 696, 705, 880, 1373
Hpy188III	TCNNGA	9 cut(s)	93, 178, 284, 515, 1037, 1140, 1217, 1225, 1327
Hpy8I	GTNNAC	4 cut(s)	460, 539, 606, 830
Hpy99I	CGWCG	1 cut(s)	448
HpyAV	CCTTC	6 cut(s)	84, 447, 745, 944, 1366, 1368
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4IV	ACGT	6 cut(s)	195, 247, 462, 541, 832, 1107
HpyCH4V	TGCA	5 cut(s)	7, 24, 865, 980, 1003
HpyF10VI	GCNNNNNNNGC	7 cut(s)	517, 572, 807, 849, 898, 1055, 1391
HpyF3I	CTNAG	6 cut(s)	380, 450, 571, 948, 1172, 1249
HpySE526I	ACGT	6 cut(s)	195, 247, 462, 541, 832, 1107
Hsp92II	CATG	5 cut(s)	122, 161, 172, 181, 667
HspAI	GCGC	1 cut(s)	852
Ksp22I	TGATCA	1 cut(s)	1311
KspAI	GTTAAC	1 cut(s)	460
KspI	CCGCGG	1 cut(s)	679
Kzo9I	GATC	5 cut(s)	489, 498, 926, 1156, 1311
LguI	GCTCTTC	1 cut(s)	628
LmnI	GCTCC	3 cut(s)	108, 150, 490
LpnPI	CCDG	9 cut(s)	78, 309, 336, 356, 480, 773, 955, 1044, 1140
Lsp1109I	GCAGC	3 cut(s)	8, 36, 634
LweI	GCATC	2 cut(s)	520, 971
MaeI	CTAG	9 cut(s)	105, 482, 777, 840, 1025, 1055, 1140, 1274, 1278
MaeII	ACGT	6 cut(s)	195, 247, 462, 541, 832, 1107
MaeIII	GTNAC	2 cut(s)	530, 671
MalI	GATC	5 cut(s)	491, 500, 928, 1158, 1313
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	5 cut(s)	489, 498, 926, 1156, 1311
MfeI	CAATTG	1 cut(s)	1299
MflI	RGATCY	2 cut(s)	926, 1156
MhlI	GDGCHC	1 cut(s)	688
MluCI	AATT	4 cut(s)	201, 267, 1220, 1299
MlyI	GAGTC	1 cut(s)	226
Mph1103I	ATGCAT	1 cut(s)	9
MroXI	GAANNNNTTC	1 cut(s)	316
MspA1I	CMGCKG	1 cut(s)	678
MspCI	CTTAAG	1 cut(s)	1318
MspI	CCGG	4 cut(s)	323, 343, 467, 942
MspR9I	CCNGG	1 cut(s)	942
MunI	CAATTG	1 cut(s)	1299
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	7 cut(s)	517, 572, 807, 849, 898, 1055, 1391
NciI	CCSGG	1 cut(s)	942
NdeI	CATATG	1 cut(s)	870
NdeII	GATC	5 cut(s)	489, 498, 926, 1156, 1311
NheI	GCTAGC	2 cut(s)	481, 1054
NlaIII	CATG	5 cut(s)	122, 161, 172, 181, 667
NlaIV	GGNNCC	2 cut(s)	293, 588
NmuCI	GTSAC	1 cut(s)	671
NsiI	ATGCAT	1 cut(s)	9
NspI	RCATGY	1 cut(s)	161
NspV	TTCGAA	1 cut(s)	1016
PagI	TCATGA	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	1130, 1349
PfoI	TCCNGGA	1 cut(s)	940
PkrI	GCNGC	4 cut(s)	23, 26, 621, 624
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Ppu21I	YACGTR	1 cut(s)	196
Psp1406I	AACGTT	2 cut(s)	462, 1107
PspN4I	GGNNCC	2 cut(s)	293, 588
PspPI	GGNCC	3 cut(s)	587, 845, 967
PstI	CTGCAG	1 cut(s)	26
PsuI	RGATCY	2 cut(s)	926, 1156
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
SacII	CCGCGG	1 cut(s)	679
SapI	GCTCTTC	1 cut(s)	628
SatI	GCNGC	4 cut(s)	22, 25, 620, 623
Sau3AI	GATC	5 cut(s)	489, 498, 926, 1156, 1311
Sau96I	GGNCC	3 cut(s)	587, 845, 967
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	942
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	2 cut(s)	520, 971
SfcI	CTRYAG	1 cut(s)	22
Sfr303I	CCGCGG	1 cut(s)	679
SfuI	TTCGAA	1 cut(s)	1016
SgrBI	CCGCGG	1 cut(s)	679
SinI	GGWCC	1 cut(s)	967
SmlI	CTYRAG	2 cut(s)	1318, 1325
SmoI	CTYRAG	2 cut(s)	1318, 1325
SnaBI	TACGTA	1 cut(s)	196
Sse9I	AATT	4 cut(s)	201, 267, 1220, 1299
SspI	AATATT	1 cut(s)	404
SspMI	CTAG	9 cut(s)	105, 482, 777, 840, 1025, 1055, 1140, 1274, 1278
StyD4I	CCNGG	1 cut(s)	940
TaaI	ACNGT	1 cut(s)	536
TaiI	ACGT	6 cut(s)	198, 250, 465, 544, 835, 1110
TaqI	TCGA	6 cut(s)	205, 283, 1016, 1218, 1260, 1267
TaqII	GACCGA	1 cut(s)	955
TasI	AATT	4 cut(s)	201, 267, 1220, 1299
TauI	GCSGC	1 cut(s)	622
TfiI	GAWTC	2 cut(s)	1130, 1349
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	3 cut(s)	21, 24, 622
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	5 cut(s)	72, 166, 194, 278, 354
TspGWI	ACGGA	3 cut(s)	124, 518, 591
Vha464I	CTTAAG	1 cut(s)	1318
VpaK11BI	GGWCC	1 cut(s)	967
XapI	RAATTY	2 cut(s)	201, 1220
XbaI	TCTAGA	1 cut(s)	1139
XceI	RCATGY	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	9 cut(s)	105, 482, 777, 840, 1025, 1055, 1140, 1274, 1278
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.