Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006964.1

Orthogroup ID

OG0009224

Physical Location & Seq

Genomic Coordinates Forward (+)

28512 .. 28861

Gene Structure 350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006964.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atggacactgcgttcgagcttgatgaaggctctcgcgccaattttcttaaactcgtcaagcagtcttttagctgctcttacatttgcttatggcggtcttatattcccaactgtttattgttttttgatggtgtttatgatgaagaaaatcaacccggtagctcttcttcttctggacctagtctagctctgaggcttttcgacgagtatcggctgtcaatgttcccgattgtccaaaatgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

81

Amino Acids

9.28

Weight (kDa)

4.46

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56960 AT5G56960
fragaria_vesca	FvH4_1g07710 FvH4_1g07710 FvH4_1g07710
malus_domestica	MD02G1081600.v1.1 MD15G1208900.v1.1
prunus_persica	Prupe.7G207500_v2.0.a1
pyrus_communis	pycom02g06440 pycom15g18520
rosa_chinensis	RchiOBHm_Chr2g0093571
rosa_laevigata	RLG00000016419
rosa_multiflora	Rmu_sc0006964.1_g000006 Rmu_sc0024845.1_g000001 Rmu_sc0024846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147970
rosa_rugosa	Rorug02G0037700
rosa_samantha	Rh2AG084200 Rh2BG084800 Rh2CG087100 Rh2DG082800
rosa_wichuraiana	Rw2G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	94
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	19, 72, 162, 188
AluI	AGCT	4 cut(s)	19, 72, 162, 188
ApeKI	GCWGC	1 cut(s)	72
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	176
BarI	GAAGNNNNNNTAC	2 cut(s)	151, 183
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	156
BfaI	CTAG	2 cut(s)	180, 185
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	156
BspACI	CCGC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	191
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	59
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	6
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	176
CviJI	RGCY	7 cut(s)	19, 30, 72, 162, 188, 196, 214
CviKI_1	RGCY	7 cut(s)	19, 30, 72, 162, 188, 196, 214
DdeI	CTNAG	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	176
FaiI	YATR	3 cut(s)	91, 102, 138
Fnu4HI	GCNGC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	2 cut(s)	180, 185
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	73
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	2 cut(s)	174, 226
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	191
HspAI	GCGC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	169
LpnPI	CCDG	2 cut(s)	159, 169
Lsp1109I	GCAGC	1 cut(s)	59
MaeI	CTAG	2 cut(s)	180, 185
MboII	GAAGA	4 cut(s)	155, 156, 159, 162
MluCI	AATT	1 cut(s)	40
MnlI	CCTC	1 cut(s)	186
MseI	TTAA	1 cut(s)	48
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	36
NciI	CCSGG	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	5 cut(s)	21, 74, 164, 181, 190
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	2 cut(s)	180, 185
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	2 cut(s)	15, 201
TasI	AATT	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	39, 156
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	176
XspI	CTAG	2 cut(s)	180, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.