Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024845.1

Orthogroup ID

OG0009224

Physical Location & Seq

Genomic Coordinates Reverse (-)

1343 .. 3322

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024845.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atggggtgcaagagtggagagattgagctcggcttctccaatgtgtctcaaatgaatgtaaagaaggaactgatcatgagaagctggatgttgccagaagctttctgtagatcacaattatctccacatacagtagaagtagttagtactagagcatatactgagcagcaaaaccaactttcatcatcttcctcatctttgagatcgcactcaaccatggatagccccgaatattcatccctcctcttcaacactctccaaacatctaccgcacctacttctctcaatatcccagctgatcaagtctataatactacaaactttacttcatcattgcaaccaattgtatcaccaaatacaaacatatttagcagtactagtagtagtactaatcctcatcaacagcccatgcaagcattttctcgaattcgagggaacatccaattaccagctcctgagatcgaagatgctgaaattacaagagcaatcctcgccgtcctgactactccttcaccttcttcatctccttctatatcttcacaccaatcagtacctccagcattgaaggatgatccggcccctagtcctagtcatctaaagccgaaacccagcagtgctttcaagaattataattacatctcatcgcctttggccccaagaacacaaacgaaaggcgctgctaatttagcaggtatgcaagctgccacccgccccacaacaagtcagttgcatcatatgatatctgagcgcaaaaggcgtgagaaacttaacgaaagctttcattctttgaaatctctacttcctcctggaaccaagaaagacaaagcatcagtgcttacaactgcaagggactacttaactagtttaaaagctcaagttgatgagcttagcaaacgaaaccagcagttagaggcagctgcaaggcttgtagcaaaagaagatcaagaagaagaaacagctggctcctcatcaacagaaagagttactgtgacgcttacgcatgtatctggctcgagcacagatcaagatcagcaaattattgccttgcaagtgattgtgagatcaggagaatgttcgaccgaagatatggtaattagaatcttggaattcttgaagcaagttaagaacttgagcttgatgtccatgaaagcaagtacttggaaaacagaattacatcccaacatcaaccgcgtggtcttgagattaagagttgatgatcaggcgaacgaatgggacgagtctgccttccaggaagcagtgagaagggtggttgctgacttggcacaaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

430

Amino Acids

47.39

Weight (kDa)

8.33

Isoelectric Point (pI)

62.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56960 AT5G56960
fragaria_vesca	FvH4_1g07710 FvH4_1g07710 FvH4_1g07710
malus_domestica	MD02G1081600.v1.1 MD15G1208900.v1.1
prunus_persica	Prupe.7G207500_v2.0.a1
pyrus_communis	pycom02g06440 pycom15g18520
rosa_chinensis	RchiOBHm_Chr2g0093571
rosa_laevigata	RLG00000016419
rosa_multiflora	Rmu_sc0006964.1_g000006 Rmu_sc0024845.1_g000001 Rmu_sc0024846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147970
rosa_rugosa	Rorug02G0037700
rosa_samantha	Rh2AG084200 Rh2BG084800 Rh2CG087100 Rh2DG082800
rosa_wichuraiana	Rw2G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
Acc36I	ACCTGC	1 cut(s)	680
AccII	CGCG	1 cut(s)	1191
AciI	CCGC	3 cut(s)	270, 709, 1189
AclWI	GGATC	1 cut(s)	566
AcsI	RAATTY	2 cut(s)	426, 1106
AfaI	GTAC	5 cut(s)	148, 376, 388, 552, 1156
AgsI	TTSAA	5 cut(s)	250, 565, 622, 790, 1114
AhlI	ACTAGT	2 cut(s)	377, 860
AjnI	CCWGG	2 cut(s)	805, 1248
Alw21I	GWGCWC	2 cut(s)	30, 1019
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	1012
AoxI	GGCC	2 cut(s)	576, 651
ApeKI	GCWGC	5 cut(s)	166, 677, 701, 914, 917
ApoI	RAATTY	2 cut(s)	426, 1106
Asp700I	GAANNNNTTC	1 cut(s)	777
AspLEI	GCGC	2 cut(s)	677, 750
AspS9I	GGNCC	2 cut(s)	577, 652
AsuHPI	GGTGA	2 cut(s)	342, 504
AvaI	CYCGRG	1 cut(s)	1012
BaeI	ACNNNNGTAYC	2 cut(s)	987, 1020
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	30, 1019
BbvI	GCAGC	5 cut(s)	178, 664, 688, 904, 926
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	2 cut(s)	807, 1250
BclI	TGATCA	3 cut(s)	72, 298, 1216
BcoDI	GTCTC	1 cut(s)	51
BcuI	ACTAGT	2 cut(s)	377, 860
BfaI	CTAG	5 cut(s)	150, 378, 582, 588, 861
BfmI	CTRYAG	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	678
BfuAI	ACCTGC	1 cut(s)	680
BisI	GCNGC	5 cut(s)	167, 678, 702, 915, 918
BlpI	GCTNAGC	1 cut(s)	887
BlsI	GCNGC	5 cut(s)	168, 679, 703, 916, 919
BmcAI	AGTACT	4 cut(s)	148, 376, 388, 1156
Bme1390I	CCNGG	2 cut(s)	807, 1250
BmeT110I	CYCGRG	1 cut(s)	1012
BmgT120I	GGNCC	2 cut(s)	577, 652
BmiI	GGNNCC	4 cut(s)	579, 654, 811, 964
BmrFI	CCNGG	2 cut(s)	807, 1250
BmsI	GCATC	3 cut(s)	457, 739, 836
BplI	GAGNNNNNCTC	2 cut(s)	474, 506
BpmI	CTGGAG	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	887
BpuEI	CTTGAG	3 cut(s)	858, 1150, 1219
BsaBI	GATNNNNATC	1 cut(s)	1026
BsaJI	CCNNGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	1026
BseBI	CCWGG	2 cut(s)	807, 1250
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	5 cut(s)	93, 236, 438, 574, 1174
BseJI	GATNNNNATC	1 cut(s)	1026
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	3 cut(s)	153, 447, 735
BseRI	GAGGAG	2 cut(s)	233, 955
BseXI	GCAGC	5 cut(s)	178, 664, 688, 904, 926
BseYI	CCCAGC	2 cut(s)	292, 608
Bsh1236I	CGCG	1 cut(s)	1191
Bsh1285I	CGRYCG	1 cut(s)	1080
BshFI	GGCC	2 cut(s)	578, 653
BsiEI	CGRYCG	1 cut(s)	1080
BsiHKAI	GWGCWC	2 cut(s)	30, 1019
BsiHKCI	CYCGRG	1 cut(s)	1012
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	2 cut(s)	863, 1247
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	863, 1247
BsnI	GGCC	2 cut(s)	578, 653
BsoBI	CYCGRG	1 cut(s)	1012
Bsp1286I	GDGCHC	2 cut(s)	30, 1019
Bsp1720I	GCTNAGC	1 cut(s)	887
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	3 cut(s)	270, 709, 1189
BspANI	GGCC	2 cut(s)	578, 653
BspCNI	CTCAG	3 cut(s)	154, 448, 736
BspFNI	CGCG	1 cut(s)	1191
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	4 cut(s)	579, 654, 811, 964
BspMI	ACCTGC	1 cut(s)	680
BspPI	GGATC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	807, 1250
Bst4CI	ACNGT	2 cut(s)	133, 988
Bst6I	CTCTTC	1 cut(s)	251
BstC8I	GCNNGC	3 cut(s)	414, 699, 961
BstDEI	CTNAG	4 cut(s)	162, 456, 744, 887
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	5 cut(s)	93, 236, 438, 574, 1174
BstFNI	CGCG	1 cut(s)	1191
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	2 cut(s)	677, 750
BstMAI	GTCTC	1 cut(s)	51
BstMCI	CGRYCG	1 cut(s)	1080
BstMWI	GCNNNNNNNGC	4 cut(s)	491, 686, 754, 1280
BstNI	CCWGG	2 cut(s)	807, 1250
BstNSI	RCATGY	1 cut(s)	1004
BstSCI	CCNGG	2 cut(s)	805, 1248
BstSFI	CTRYAG	1 cut(s)	106
BstUI	CGCG	1 cut(s)	1191
BstV1I	GCAGC	5 cut(s)	178, 664, 688, 904, 926
BsuRI	GGCC	2 cut(s)	578, 653
BtgI	CCRYGG	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	5 cut(s)	93, 236, 438, 574, 1174
BtsI	GCAGTG	2 cut(s)	619, 1263
BtsIMutI	CAGTG	3 cut(s)	619, 837, 1263
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	3 cut(s)	414, 699, 961
CaiI	CAGNNNCTG	1 cut(s)	455
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	2 cut(s)	677, 750
Cfr13I	GGNCC	2 cut(s)	577, 652
CseI	GACGC	1 cut(s)	1000
Csp6I	GTAC	5 cut(s)	147, 375, 387, 551, 1155
CviAII	CATG	5 cut(s)	76, 217, 409, 1001, 1144
CviQI	GTAC	5 cut(s)	147, 375, 387, 551, 1155
DdeI	CTNAG	4 cut(s)	162, 456, 744, 887
DraI	TTTAAA	1 cut(s)	867
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	741
Eco53kI	GAGCTC	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	1012
EcoICRI	GAGCTC	1 cut(s)	28
EcoRI	GAATTC	2 cut(s)	426, 1106
EcoRII	CCWGG	2 cut(s)	805, 1248
EcoRV	GATATC	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	5 cut(s)	79, 220, 412, 1004, 1147
FaqI	GGGAC	2 cut(s)	863, 1247
FatI	CATG	5 cut(s)	75, 216, 408, 1000, 1143
FauI	CCCGC	1 cut(s)	716
FauNDI	CATATG	1 cut(s)	735
FbaI	TGATCA	3 cut(s)	72, 298, 1216
Fnu4HI	GCNGC	5 cut(s)	167, 678, 702, 915, 918
FokI	GGATG	5 cut(s)	100, 223, 425, 581, 1161
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	5 cut(s)	167, 678, 702, 915, 918
FspBI	CTAG	5 cut(s)	150, 378, 582, 588, 861
GlaI	GCGC	2 cut(s)	676, 749
GluI	GCNGC	5 cut(s)	167, 678, 702, 915, 918
GsaI	CCCAGC	2 cut(s)	296, 612
GsuI	CTGGAG	1 cut(s)	540
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	578, 653
HapII	CCGG	1 cut(s)	575
HgaI	GACGC	1 cut(s)	1000
HhaI	GCGC	2 cut(s)	677, 750
Hin1II	CATG	5 cut(s)	79, 220, 412, 1004, 1147
Hin6I	GCGC	2 cut(s)	675, 748
HinP1I	GCGC	2 cut(s)	675, 748
HindIII	AAGCTT	2 cut(s)	99, 775
HinfI	GANTC	2 cut(s)	1098, 1238
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	2 cut(s)	342, 504
Hpy188I	TCNGA	1 cut(s)	745
HpyAV	CCTTC	7 cut(s)	58, 519, 525, 537, 559, 1255, 1257
HpyCH4III	ACNGT	2 cut(s)	133, 988
HpyCH4V	TGCA	8 cut(s)	9, 337, 412, 697, 730, 845, 920, 1048
HpyF10VI	GCNNNNNNNGC	4 cut(s)	491, 686, 754, 1280
HpyF3I	CTNAG	4 cut(s)	162, 456, 744, 887
Hsp92II	CATG	5 cut(s)	79, 220, 412, 1004, 1147
HspAI	GCGC	2 cut(s)	675, 748
Ksp22I	TGATCA	3 cut(s)	72, 298, 1216
LmnI	GCTCC	2 cut(s)	457, 968
Lsp1109I	GCAGC	5 cut(s)	178, 664, 688, 904, 926
LweI	GCATC	3 cut(s)	457, 739, 836
MaeI	CTAG	5 cut(s)	150, 378, 582, 588, 861
MaeIII	GTNAC	2 cut(s)	982, 988
MboII	GAAGA	9 cut(s)	180, 238, 476, 510, 528, 950, 959, 962, 1094
MfeI	CAATTG	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	30, 1019
MlyI	GAGTC	1 cut(s)	1247
MroXI	GAANNNNTTC	1 cut(s)	777
MseI	TTAA	5 cut(s)	768, 857, 866, 1122, 1205
MspA1I	CMGCKG	3 cut(s)	296, 917, 959
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	807, 1250
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	2 cut(s)	807, 1250
MvnI	CGCG	1 cut(s)	1191
MwoI	GCNNNNNNNGC	4 cut(s)	491, 686, 754, 1280
NcoI	CCATGG	1 cut(s)	216
NdeI	CATATG	1 cut(s)	735
NlaIII	CATG	5 cut(s)	79, 220, 412, 1004, 1147
NlaIV	GGNNCC	4 cut(s)	579, 654, 811, 964
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	988
NspI	RCATGY	1 cut(s)	1004
PaeR7I	CTCGAG	1 cut(s)	1012
PagI	TCATGA	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	1233
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	1 cut(s)	1098
PfoI	TCCNGGA	2 cut(s)	805, 1248
PkrI	GCNGC	5 cut(s)	168, 679, 703, 916, 919
PleI	GAGTC	1 cut(s)	1246
PpsI	GAGTC	1 cut(s)	1246
PsiI	TTATAA	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	805, 1248
PspFI	CCCAGC	2 cut(s)	292, 608
PspGI	CCWGG	2 cut(s)	805, 1248
PspN4I	GGNNCC	4 cut(s)	579, 654, 811, 964
PspPI	GGNCC	2 cut(s)	577, 652
PspXI	VCTCGAGB	1 cut(s)	1012
PstNI	CAGNNNCTG	1 cut(s)	455
PvuII	CAGCTG	3 cut(s)	296, 917, 959
RsaI	GTAC	5 cut(s)	148, 376, 388, 552, 1156
RsaNI	GTAC	5 cut(s)	147, 375, 387, 551, 1155
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	5 cut(s)	768, 857, 866, 1122, 1205
SatI	GCNGC	5 cut(s)	167, 678, 702, 915, 918
Sau96I	GGNCC	2 cut(s)	577, 652
ScaI	AGTACT	4 cut(s)	148, 376, 388, 1156
SchI	GAGTC	1 cut(s)	1247
ScrFI	CCNGG	2 cut(s)	807, 1250
SduI	GDGCHC	2 cut(s)	30, 1019
SfaNI	GCATC	3 cut(s)	457, 739, 836
SfcI	CTRYAG	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	1012
SlaI	CTCGAG	1 cut(s)	1012
SmlI	CTYRAG	4 cut(s)	873, 1012, 1129, 1198
SmoI	CTYRAG	4 cut(s)	873, 1012, 1129, 1198
SpeI	ACTAGT	2 cut(s)	377, 860
SsiI	CCGC	3 cut(s)	270, 709, 1189
SspI	AATATT	1 cut(s)	233
SspMI	CTAG	5 cut(s)	150, 378, 582, 588, 861
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	805, 1248
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	133, 988
TaqI	TCGA	5 cut(s)	424, 430, 462, 1013, 1076
TaqII	GACCGA	1 cut(s)	1094
TatI	WGTACW	4 cut(s)	146, 374, 386, 1154
TfiI	GAWTC	1 cut(s)	1098
Tru1I	TTAA	5 cut(s)	768, 857, 866, 1122, 1205
Tru9I	TTAA	5 cut(s)	768, 857, 866, 1122, 1205
TscAI	CASTG	3 cut(s)	619, 837, 1263
TseFI	GTSAC	1 cut(s)	988
TseI	GCWGC	5 cut(s)	166, 677, 701, 914, 917
Tsp45I	GTSAC	1 cut(s)	988
TspDTI	ATGAA	7 cut(s)	68, 171, 225, 318, 510, 770, 1160
TspRI	CASTG	3 cut(s)	619, 837, 1263
XapI	RAATTY	2 cut(s)	426, 1106
XceI	RCATGY	1 cut(s)	1004
XhoI	CTCGAG	1 cut(s)	1012
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	5 cut(s)	150, 378, 582, 588, 861
ZrmI	AGTACT	4 cut(s)	148, 376, 388, 1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.