transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G56960 AT5G56960 |
| fragaria_vesca | FvH4_1g07710 FvH4_1g07710 FvH4_1g07710 |
| malus_domestica | MD02G1081600.v1.1 MD15G1208900.v1.1 |
| prunus_persica | Prupe.7G207500_v2.0.a1 |
| pyrus_communis | pycom02g06440 pycom15g18520 |
| rosa_chinensis | RchiOBHm_Chr2g0093571 |
| rosa_laevigata | RLG00000016419 |
| rosa_multiflora | Rmu_sc0006964.1_g000006 Rmu_sc0024845.1_g000001 Rmu_sc0024846.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00147970 |
| rosa_rugosa | Rorug02G0037700 |
| rosa_samantha | Rh2AG084200 Rh2BG084800 Rh2CG087100 Rh2DG082800 |
| rosa_wichuraiana | Rw2G007120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1539 |
| AccII | CGCG | 3 cut(s) | 36, 1065, 1572 |
| AccIII | TCCGGA | 1 cut(s) | 793 |
| AciI | CCGC | 5 cut(s) | 372, 1095, 1477, 1498, 1570 |
| AclI | AACGTT | 1 cut(s) | 225 |
| AclWI | GGATC | 3 cut(s) | 647, 1017, 1468 |
| AcoI | YGGCCR | 2 cut(s) | 1096, 1305 |
| AcsI | RAATTY | 2 cut(s) | 1487, 1555 |
| AfaI | GTAC | 2 cut(s) | 730, 1229 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 793, 1094, 1483, 1539 |
| AflIII | ACRYGT | 1 cut(s) | 1378 |
| AgsI | TTSAA | 8 cut(s) | 199, 223, 592, 946, 1048, 1165, 1243, 1495 |
| AhlI | ACTAGT | 3 cut(s) | 725, 731, 1235 |
| AjnI | CCWGG | 4 cut(s) | 247, 437, 1180, 1626 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 154, 186 |
| Alw26I | GTCTC | 1 cut(s) | 408 |
| AlwI | GGATC | 3 cut(s) | 647, 1017, 1468 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1337 |
| Ama87I | CYCGRG | 1 cut(s) | 1248 |
| Aor13HI | TCCGGA | 1 cut(s) | 793 |
| AoxI | GGCC | 3 cut(s) | 494, 1096, 1305 |
| ApeKI | GCWGC | 5 cut(s) | 72, 190, 1328, 1331, 1619 |
| ApoI | RAATTY | 2 cut(s) | 1487, 1555 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1069, 1101 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 718, 1152 |
| AspLEI | GCGC | 2 cut(s) | 38, 1125 |
| AspS9I | GGNCC | 1 cut(s) | 298 |
| AsuC2I | CCSGG | 1 cut(s) | 1304 |
| AsuHPI | GGTGA | 2 cut(s) | 840, 1483 |
| AvaI | CYCGRG | 1 cut(s) | 1248 |
| AvaII | GGWCC | 1 cut(s) | 298 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1365, 1398 |
| BbvCI | CCTCAGC | 1 cut(s) | 961 |
| BbvI | GCAGC | 5 cut(s) | 59, 202, 1340, 1343, 1606 |
| BccI | CCATC | 2 cut(s) | 128, 758 |
| BciT130I | CCWGG | 4 cut(s) | 249, 439, 1182, 1628 |
| BciVI | GTATCC | 1 cut(s) | 1082 |
| BclI | TGATCA | 1 cut(s) | 1594 |
| BcnI | CCSGG | 1 cut(s) | 1304 |
| BcoDI | GTCTC | 1 cut(s) | 408 |
| BcuI | ACTAGT | 3 cut(s) | 725, 731, 1235 |
| BfaI | CTAG | 4 cut(s) | 20, 726, 732, 1236 |
| BfmI | CTRYAG | 2 cut(s) | 348, 1338 |
| BfuI | GTATCC | 1 cut(s) | 1082 |
| BglII | AGATCT | 1 cut(s) | 630 |
| BisI | GCNGC | 6 cut(s) | 73, 191, 1096, 1329, 1332, 1620 |
| BlsI | GCNGC | 6 cut(s) | 74, 192, 1097, 1330, 1333, 1621 |
| BmcAI | AGTACT | 2 cut(s) | 730, 1229 |
| Bme1390I | CCNGG | 5 cut(s) | 249, 439, 1182, 1304, 1628 |
| Bme18I | GGWCC | 1 cut(s) | 298 |
| BmeT110I | CYCGRG | 1 cut(s) | 1248 |
| BmgT120I | GGNCC | 1 cut(s) | 298 |
| BmiI | GGNNCC | 4 cut(s) | 687, 1186, 1345, 1603 |
| BmrFI | CCNGG | 5 cut(s) | 249, 439, 1182, 1304, 1628 |
| BmsI | GCATC | 3 cut(s) | 323, 796, 1114 |
| Bpu10I | CCTNAGC | 1 cut(s) | 961 |
| BpuEI | CTTGAG | 1 cut(s) | 1057 |
| BpuMI | CCSGG | 1 cut(s) | 1304 |
| Bsa29I | ATCGAT | 1 cut(s) | 561 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1407 |
| BsaJI | CCNNGG | 3 cut(s) | 1203, 1302, 1524 |
| BsaWI | WCCGGW | 2 cut(s) | 770, 793 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 793, 1094, 1483, 1539 |
| Bse118I | RCCGGY | 1 cut(s) | 1002 |
| Bse1I | ACTGG | 3 cut(s) | 315, 936, 1099 |
| Bse3DI | GCAATG | 1 cut(s) | 6 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1407 |
| BseAI | TCCGGA | 1 cut(s) | 793 |
| BseBI | CCWGG | 4 cut(s) | 249, 439, 1182, 1628 |
| BseCI | ATCGAT | 1 cut(s) | 561 |
| BseDI | CCNNGG | 3 cut(s) | 1203, 1302, 1524 |
| BseGI | GGATG | 6 cut(s) | 524, 621, 750, 777, 1385, 1394 |
| BseJI | GATNNNNATC | 1 cut(s) | 1407 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 793, 1094, 1483, 1539 |
| BseMI | GCAATG | 1 cut(s) | 6 |
| BseMII | CTCAG | 2 cut(s) | 975, 1571 |
| BseNI | ACTGG | 3 cut(s) | 315, 936, 1099 |
| BseRI | GAGGAG | 2 cut(s) | 575, 1336 |
| BseXI | GCAGC | 5 cut(s) | 59, 202, 1340, 1343, 1606 |
| BseYI | CCCAGC | 1 cut(s) | 385 |
| Bsh1236I | CGCG | 3 cut(s) | 36, 1065, 1572 |
| BshFI | GGCC | 3 cut(s) | 496, 1098, 1307 |
| BshVI | ATCGAT | 1 cut(s) | 561 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1248 |
| BsiSI | CCGG | 4 cut(s) | 771, 794, 1003, 1304 |
| BslFI | GGGAC | 2 cut(s) | 1071, 1625 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 793, 1094, 1483, 1539 |
| BsmAI | GTCTC | 1 cut(s) | 408 |
| BsmFI | GGGAC | 2 cut(s) | 1071, 1625 |
| BsnI | GGCC | 3 cut(s) | 496, 1098, 1307 |
| BsoBI | CYCGRG | 1 cut(s) | 1248 |
| Bsp13I | TCCGGA | 1 cut(s) | 793 |
| Bsp19I | CCATGG | 1 cut(s) | 1524 |
| Bsp68I | TCGCGA | 1 cut(s) | 1065 |
| BspACI | CCGC | 5 cut(s) | 372, 1095, 1477, 1498, 1570 |
| BspANI | GGCC | 3 cut(s) | 496, 1098, 1307 |
| BspCNI | CTCAG | 2 cut(s) | 974, 1572 |
| BspDI | ATCGAT | 1 cut(s) | 561 |
| BspEI | TCCGGA | 1 cut(s) | 793 |
| BspFNI | CGCG | 3 cut(s) | 36, 1065, 1572 |
| BspLI | GGNNCC | 4 cut(s) | 687, 1186, 1345, 1603 |
| BspMAI | CTGCAG | 2 cut(s) | 352, 1342 |
| BspPI | GGATC | 3 cut(s) | 647, 1017, 1468 |
| BspQI | GCTCTTC | 1 cut(s) | 172 |
| BsrDI | GCAATG | 1 cut(s) | 6 |
| BsrFI | RCCGGY | 1 cut(s) | 1002 |
| BsrI | ACTGG | 3 cut(s) | 315, 936, 1099 |
| BssAI | RCCGGY | 1 cut(s) | 1002 |
| BssECI | CCNNGG | 3 cut(s) | 1203, 1302, 1524 |
| BssT1I | CCWWGG | 1 cut(s) | 1524 |
| Bst2UI | CCWGG | 4 cut(s) | 249, 439, 1182, 1628 |
| Bst4CI | ACNGT | 2 cut(s) | 242, 522 |
| Bst6I | CTCTTC | 3 cut(s) | 172, 535, 593 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1012, 1337 |
| BstC8I | GCNNGC | 4 cut(s) | 490, 494, 1004, 1342 |
| BstDEI | CTNAG | 6 cut(s) | 961, 1262, 1312, 1439, 1580, 1657 |
| BstDSI | CCRYGG | 1 cut(s) | 1524 |
| BstEII | GGTNACC | 1 cut(s) | 441 |
| BstF5I | GGATG | 6 cut(s) | 524, 621, 750, 777, 1385, 1394 |
| BstFNI | CGCG | 3 cut(s) | 36, 1065, 1572 |
| BstHHI | GCGC | 2 cut(s) | 38, 1125 |
| BstMAI | GTCTC | 1 cut(s) | 408 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 755, 830, 1012, 1129, 1325, 1337, 1658 |
| BstNI | CCWGG | 4 cut(s) | 249, 439, 1182, 1628 |
| BstNSI | RCATGY | 2 cut(s) | 1015, 1382 |
| BstPI | GGTNACC | 1 cut(s) | 441 |
| BstSCI | CCNGG | 5 cut(s) | 247, 437, 1180, 1302, 1626 |
| BstSFI | CTRYAG | 2 cut(s) | 348, 1338 |
| BstUI | CGCG | 3 cut(s) | 36, 1065, 1572 |
| BstV1I | GCAGC | 5 cut(s) | 59, 202, 1340, 1343, 1606 |
| BstX2I | RGATCY | 1 cut(s) | 630 |
| BstYI | RGATCY | 1 cut(s) | 630 |
| Bsu15I | ATCGAT | 1 cut(s) | 561 |
| BsuI | GTATCC | 1 cut(s) | 1082 |
| BsuRI | GGCC | 3 cut(s) | 496, 1098, 1307 |
| BsuTUI | ATCGAT | 1 cut(s) | 561 |
| BtgI | CCRYGG | 1 cut(s) | 1524 |
| BtgZI | GCGATG | 1 cut(s) | 896 |
| BtsCI | GGATG | 6 cut(s) | 524, 621, 750, 777, 1385, 1394 |
| BtsIMutI | CAGTG | 1 cut(s) | 943 |
| BtuMI | TCGCGA | 1 cut(s) | 1065 |
| Cac8I | GCNNGC | 4 cut(s) | 490, 494, 1004, 1342 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1337 |
| CfoI | GCGC | 2 cut(s) | 38, 1125 |
| Cfr10I | RCCGGY | 1 cut(s) | 1002 |
| Cfr13I | GGNCC | 1 cut(s) | 298 |
| ClaI | ATCGAT | 1 cut(s) | 561 |
| CsiI | ACCWGGT | 1 cut(s) | 437 |
| Csp6I | GTAC | 2 cut(s) | 729, 1228 |
| CviAII | CATG | 5 cut(s) | 58, 358, 1012, 1379, 1525 |
| CviQI | GTAC | 2 cut(s) | 729, 1228 |
| DdeI | CTNAG | 6 cut(s) | 961, 1262, 1312, 1439, 1580, 1657 |
| EaeI | YGGCCR | 2 cut(s) | 1096, 1305 |
| Eam1104I | CTCTTC | 3 cut(s) | 172, 535, 593 |
| EarI | CTCTTC | 3 cut(s) | 172, 535, 593 |
| Eco130I | CCWWGG | 1 cut(s) | 1524 |
| Eco32I | GATATC | 2 cut(s) | 1116, 1545 |
| Eco47I | GGWCC | 1 cut(s) | 298 |
| Eco88I | CYCGRG | 1 cut(s) | 1248 |
| Eco91I | GGTNACC | 1 cut(s) | 441 |
| EcoO65I | GGTNACC | 1 cut(s) | 441 |
| EcoRI | GAATTC | 1 cut(s) | 1487 |
| EcoRII | CCWGG | 4 cut(s) | 247, 437, 1180, 1626 |
| EcoRV | GATATC | 2 cut(s) | 1116, 1545 |
| EcoT14I | CCWWGG | 1 cut(s) | 1524 |
| ErhI | CCWWGG | 1 cut(s) | 1524 |
| FaeI | CATG | 5 cut(s) | 61, 361, 1015, 1382, 1528 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 154, 186 |
| FaqI | GGGAC | 2 cut(s) | 1071, 1625 |
| FatI | CATG | 5 cut(s) | 57, 357, 1011, 1378, 1524 |
| FauI | CCCGC | 1 cut(s) | 1491 |
| FauNDI | CATATG | 1 cut(s) | 1110 |
| FbaI | TGATCA | 1 cut(s) | 1594 |
| Fnu4HI | GCNGC | 6 cut(s) | 73, 191, 1096, 1329, 1332, 1620 |
| FokI | GGATG | 6 cut(s) | 511, 608, 737, 764, 1372, 1381 |
| Fsp4HI | GCNGC | 6 cut(s) | 73, 191, 1096, 1329, 1332, 1620 |
| FspBI | CTAG | 4 cut(s) | 20, 726, 732, 1236 |
| GlaI | GCGC | 2 cut(s) | 37, 1124 |
| GluI | GCNGC | 6 cut(s) | 73, 191, 1096, 1329, 1332, 1620 |
| GsaI | CCCAGC | 1 cut(s) | 389 |
| HaeIII | GGCC | 3 cut(s) | 496, 1098, 1307 |
| HapII | CCGG | 4 cut(s) | 771, 794, 1003, 1304 |
| HhaI | GCGC | 2 cut(s) | 38, 1125 |
| Hin1II | CATG | 5 cut(s) | 61, 361, 1015, 1382, 1528 |
| Hin6I | GCGC | 2 cut(s) | 36, 1123 |
| HinP1I | GCGC | 2 cut(s) | 36, 1123 |
| HindIII | AAGCTT | 5 cut(s) | 450, 756, 1042, 1150, 1513 |
| HinfI | GANTC | 3 cut(s) | 252, 1048, 1391 |
| HpaII | CCGG | 4 cut(s) | 771, 794, 1003, 1304 |
| HphI | GGTGA | 2 cut(s) | 840, 1483 |
| Hpy188I | TCNGA | 6 cut(s) | 345, 652, 1053, 1120, 1390, 1549 |
| HpyAV | CCTTC | 9 cut(s) | 20, 56, 120, 861, 903, 1042, 1061, 1633, 1635 |
| HpyCH4III | ACNGT | 2 cut(s) | 242, 522 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 755, 830, 1012, 1129, 1325, 1337, 1658 |
| HpyF3I | CTNAG | 6 cut(s) | 961, 1262, 1312, 1439, 1580, 1657 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92II | CATG | 5 cut(s) | 61, 361, 1015, 1382, 1528 |
| HspAI | GCGC | 2 cut(s) | 36, 1123 |
| Kpn2I | TCCGGA | 1 cut(s) | 793 |
| KroI | GCCGGC | 1 cut(s) | 1002 |
| KroNI | GCCGGC | 1 cut(s) | 1004 |
| Ksp22I | TGATCA | 1 cut(s) | 1594 |
| LguI | GCTCTTC | 1 cut(s) | 172 |
| LmnI | GCTCC | 3 cut(s) | 1120, 1316, 1349 |
| Lsp1109I | GCAGC | 5 cut(s) | 59, 202, 1340, 1343, 1606 |
| LweI | GCATC | 3 cut(s) | 323, 796, 1114 |
| MabI | ACCWGGT | 1 cut(s) | 437 |
| MaeI | CTAG | 4 cut(s) | 20, 726, 732, 1236 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MaeIII | GTNAC | 1 cut(s) | 441 |
| MflI | RGATCY | 1 cut(s) | 630 |
| MmeI | TCCRAC | 2 cut(s) | 40, 623 |
| MroI | TCCGGA | 1 cut(s) | 793 |
| MroNI | GCCGGC | 1 cut(s) | 1002 |
| MroXI | GAANNNNTTC | 2 cut(s) | 718, 1152 |
| MseI | TTAA | 2 cut(s) | 675, 1586 |
| MspI | CCGG | 4 cut(s) | 771, 794, 1003, 1304 |
| MspR9I | CCNGG | 5 cut(s) | 249, 439, 1182, 1304, 1628 |
| MvaI | CCWGG | 4 cut(s) | 249, 439, 1182, 1628 |
| MvnI | CGCG | 3 cut(s) | 36, 1065, 1572 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 755, 830, 1012, 1129, 1325, 1337, 1658 |
| NaeI | GCCGGC | 1 cut(s) | 1004 |
| NciI | CCSGG | 1 cut(s) | 1304 |
| NcoI | CCATGG | 1 cut(s) | 1524 |
| NdeI | CATATG | 1 cut(s) | 1110 |
| NgoMIV | GCCGGC | 1 cut(s) | 1002 |
| NlaIII | CATG | 5 cut(s) | 61, 361, 1015, 1382, 1528 |
| NlaIV | GGNNCC | 4 cut(s) | 687, 1186, 1345, 1603 |
| NmeAIII | GCCGAG | 1 cut(s) | 166 |
| NruI | TCGCGA | 1 cut(s) | 1065 |
| NspI | RCATGY | 2 cut(s) | 1015, 1382 |
| PaeR7I | CTCGAG | 1 cut(s) | 1248 |
| PciI | ACATGT | 1 cut(s) | 1378 |
| PciSI | GCTCTTC | 1 cut(s) | 172 |
| PdiI | GCCGGC | 1 cut(s) | 1004 |
| PdmI | GAANNNNTTC | 2 cut(s) | 718, 1152 |
| PfeI | GAWTC | 3 cut(s) | 252, 1048, 1391 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1539 |
| PfoI | TCCNGGA | 2 cut(s) | 247, 1626 |
| PkrI | GCNGC | 6 cut(s) | 74, 192, 1097, 1330, 1333, 1621 |
| PscI | ACATGT | 1 cut(s) | 1378 |
| Psp1406I | AACGTT | 1 cut(s) | 225 |
| Psp6I | CCWGG | 4 cut(s) | 247, 437, 1180, 1626 |
| PspEI | GGTNACC | 1 cut(s) | 441 |
| PspFI | CCCAGC | 1 cut(s) | 385 |
| PspGI | CCWGG | 4 cut(s) | 247, 437, 1180, 1626 |
| PspN4I | GGNNCC | 4 cut(s) | 687, 1186, 1345, 1603 |
| PspPI | GGNCC | 1 cut(s) | 298 |
| PspXI | VCTCGAGB | 1 cut(s) | 1248 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 706, 738 |
| PstI | CTGCAG | 2 cut(s) | 352, 1342 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1337 |
| PsuI | RGATCY | 1 cut(s) | 630 |
| RruI | TCGCGA | 1 cut(s) | 1065 |
| RsaI | GTAC | 2 cut(s) | 730, 1229 |
| RsaNI | GTAC | 2 cut(s) | 729, 1228 |
| SapI | GCTCTTC | 1 cut(s) | 172 |
| SaqAI | TTAA | 2 cut(s) | 675, 1586 |
| SatI | GCNGC | 6 cut(s) | 73, 191, 1096, 1329, 1332, 1620 |
| Sau96I | GGNCC | 1 cut(s) | 298 |
| ScaI | AGTACT | 2 cut(s) | 730, 1229 |
| ScrFI | CCNGG | 5 cut(s) | 249, 439, 1182, 1304, 1628 |
| SexAI | ACCWGGT | 1 cut(s) | 437 |
| SfaNI | GCATC | 3 cut(s) | 323, 796, 1114 |
| SfcI | CTRYAG | 2 cut(s) | 348, 1338 |
| Sfr274I | CTCGAG | 1 cut(s) | 1248 |
| SinI | GGWCC | 1 cut(s) | 298 |
| SlaI | CTCGAG | 1 cut(s) | 1248 |
| SmlI | CTYRAG | 2 cut(s) | 1036, 1248 |
| SmoI | CTYRAG | 2 cut(s) | 1036, 1248 |
| SpeI | ACTAGT | 3 cut(s) | 725, 731, 1235 |
| SsiI | CCGC | 5 cut(s) | 372, 1095, 1477, 1498, 1570 |
| SspI | AATATT | 1 cut(s) | 575 |
| SspMI | CTAG | 4 cut(s) | 20, 726, 732, 1236 |
| StyD4I | CCNGG | 5 cut(s) | 247, 437, 1180, 1302, 1626 |
| StyI | CCWWGG | 1 cut(s) | 1524 |
| TaaI | ACNGT | 2 cut(s) | 242, 522 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TaqI | TCGA | 7 cut(s) | 49, 132, 231, 561, 766, 801, 1249 |
| TatI | WGTACW | 2 cut(s) | 728, 1227 |
| TauI | GCSGC | 1 cut(s) | 1098 |
| TfiI | GAWTC | 3 cut(s) | 252, 1048, 1391 |
| Tru1I | TTAA | 2 cut(s) | 675, 1586 |
| Tru9I | TTAA | 2 cut(s) | 675, 1586 |
| TscAI | CASTG | 1 cut(s) | 943 |
| TseI | GCWGC | 5 cut(s) | 72, 190, 1328, 1331, 1619 |
| TspGWI | ACGGA | 1 cut(s) | 544 |
| TspRI | CASTG | 1 cut(s) | 943 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1539 |
| VpaK11BI | GGWCC | 1 cut(s) | 298 |
| XapI | RAATTY | 2 cut(s) | 1487, 1555 |
| XceI | RCATGY | 2 cut(s) | 1015, 1382 |
| XhoI | CTCGAG | 1 cut(s) | 1248 |
| XmnI | GAANNNNTTC | 2 cut(s) | 718, 1152 |
| XspI | CTAG | 4 cut(s) | 20, 726, 732, 1236 |
| ZrmI | AGTACT | 2 cut(s) | 730, 1229 |