MD02G1081600.v1.1

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
6399988 .. 6403120
3133 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1081600.v1.1.491

Sequence Viewer

Length: 1671 bp
ATGGACATTGCTTTCCAACTAGATGAAGGCTCTCGCGCCAATTTCCTTCGACTTGTCATGCAATCTTTTGGCTGCTTCTACATTTGCTTGTGGTCTTATATGCCCCCTCCTTCTAACTTCTTATTTTTTCTCGATGGTGTTTATGATGAAGAAAATCAACCAAGCTCTTCTTCGGGCAGTTTGGCTCGGCAGCTTTTCAATGAATATCGCCTATCAGTATTCAACGTTGTCGAAAATGACTGTGTTCCAGGATTCGCTTTCAGGAATAGCGTTCCATATTTGGAGTTGCAAGAAATGGACCTACAAAGACTGGCATCAGTTGATACACAGAGGCAATTTTATCAGACTGCAGTTTTCATGGGGTGCAAAAGCGGAGAAATTGAGCTGGGCTTGTCCAATGTGTCTCAAATAGACATAAAAAGAGAATTGATGAGAACCTGGTTACCAGAAGCTTTTTCCAGACAATTATCTCCACATACAGAAGTTGCCAGCAGGCCAATCAATGTTCAGCAAAACCCACCGTCATCCTCTTCATCTTCTTTGAGATCACTTTCCGTAATCGATAGTCCTGAATATTCCTCCCTCCTCTTCAACATTCCAACCACTACTACTTCTCATAACATCCCAGAGATCTTTACACAATTATCTTCCGATCCCTTGCGACCAATCAATGTTAATCCATTGGAACCTTTACCAATCATAAATCTCATTAGAACTACTTCTACTAGTACTAGTCCTCATCAACAAGCCATCCAAGCTTTTTCTCGAACCGGAAACATCCAATTCCCAACTCCGGAGATCGAAGATGCCACAATGACAAGAGCTATCCTTGCAGTTCTATCTTCTTCACCTTCTTCTTCTTCATATCAACCACCCCCACATACTAATCCACCTTCTTCTTCTACTGCTCATCGCCACTTACTAACTCCAAAATCCAGTGCTTTCAAGACTTACAGCACCTCAGCTTTAGCCCCAAGAACGCAAATGAGTGCTAATTTACGCCGGCAAAACATGCACAAGCGATCCATTTCCTTCTTGAGAAGCTTGAATCTGATGAGGCTTCGCGAAGGTATCCAAACCACCCGTCCCACAAGCGGCCAGTTGCATCATATGATATCGGAGCGCAAAAGGCGTGAGAAGATCAATGAAAGCTTTCATACATTGAAATCATTACTTCCACCTGGAACCAAGAAAGACAAAGCCTCGGTTCTTATATCTGCGAGGGAGTACTTGACTAGTTTGAAAGCTCGAGTTGATGAGCTTAGTAAAAGAAACCAGCAGTTAGAGGCAAGGCTCTTGCCCCCGGCCAACTTAGGAGCTAATGAAGCAGCAGCTACTGCAGGCTCCTCAAATGAACGAGTTAGTCTTACACTTACACATGTATCATCCGAATCATCCCCCGATCAAGATCAGCAAATTATTGACTTGCAAGTGGTTCTAAGATCAATAGAGAGTTGCACCGAAGATATGGTGATCCGCATTTTGGAATTCTTGAAGCGGGTTGAGAATGTAAGCTTGATGTCCATGGAAGCCAATACTTGGATATCAGAACCAAATTCTAACATCAACCGCGTAATCCTGAGATTAAGAGTTGATCAGGGAACCGAATGGGACGAGGCTGCCTTCCAGGAAGCAGTAAGAAGGGTGGTTGCTGACTTAGCATTGATATAA

Protein Analysis

557

Amino Acids

62.4

Weight (kDa)

6.85

Isoelectric Point (pI)

66.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7050 PF23133 1 - 154 1.9e-60 Domain of unknown function (DUF7050)
HLH PF00010 369 - 414 4.5e-11 Helix-loop-helix DNA-binding domain
DUF7049 PF23132 451 - 553 2.3e-30 Domain of unknown function (DUF7049)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1539
AccII CGCG 3 cut(s) 36, 1065, 1572
AccIII TCCGGA 1 cut(s) 793
AciI CCGC 5 cut(s) 372, 1095, 1477, 1498, 1570
AclI AACGTT 1 cut(s) 225
AclWI GGATC 3 cut(s) 647, 1017, 1468
AcoI YGGCCR 2 cut(s) 1096, 1305
AcsI RAATTY 2 cut(s) 1487, 1555
AfaI GTAC 2 cut(s) 730, 1229
AfiI CCNNNNNNNGG 4 cut(s) 793, 1094, 1483, 1539
AflIII ACRYGT 1 cut(s) 1378
AgsI TTSAA 8 cut(s) 199, 223, 592, 946, 1048, 1165, 1243, 1495
AhlI ACTAGT 3 cut(s) 725, 731, 1235
AjnI CCWGG 4 cut(s) 247, 437, 1180, 1626
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 3 cut(s) 647, 1017, 1468
AlwNI CAGNNNCTG 1 cut(s) 1337
Ama87I CYCGRG 1 cut(s) 1248
Aor13HI TCCGGA 1 cut(s) 793
AoxI GGCC 3 cut(s) 494, 1096, 1305
ApeKI GCWGC 5 cut(s) 72, 190, 1328, 1331, 1619
ApoI RAATTY 2 cut(s) 1487, 1555
ArsI GACNNNNNNTTYG 2 cut(s) 1069, 1101
Asp700I GAANNNNTTC 2 cut(s) 718, 1152
AspLEI GCGC 2 cut(s) 38, 1125
AspS9I GGNCC 1 cut(s) 298
AsuC2I CCSGG 1 cut(s) 1304
AsuHPI GGTGA 2 cut(s) 840, 1483
AvaI CYCGRG 1 cut(s) 1248
AvaII GGWCC 1 cut(s) 298
BaeI ACNNNNGTAYC 2 cut(s) 1365, 1398
BbvCI CCTCAGC 1 cut(s) 961
BbvI GCAGC 5 cut(s) 59, 202, 1340, 1343, 1606
BccI CCATC 2 cut(s) 128, 758
BciT130I CCWGG 4 cut(s) 249, 439, 1182, 1628
BciVI GTATCC 1 cut(s) 1082
BclI TGATCA 1 cut(s) 1594
BcnI CCSGG 1 cut(s) 1304
BcoDI GTCTC 1 cut(s) 408
BcuI ACTAGT 3 cut(s) 725, 731, 1235
BfaI CTAG 4 cut(s) 20, 726, 732, 1236
BfmI CTRYAG 2 cut(s) 348, 1338
BfuI GTATCC 1 cut(s) 1082
BglII AGATCT 1 cut(s) 630
BisI GCNGC 6 cut(s) 73, 191, 1096, 1329, 1332, 1620
BlsI GCNGC 6 cut(s) 74, 192, 1097, 1330, 1333, 1621
BmcAI AGTACT 2 cut(s) 730, 1229
Bme1390I CCNGG 5 cut(s) 249, 439, 1182, 1304, 1628
Bme18I GGWCC 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 1248
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 4 cut(s) 687, 1186, 1345, 1603
BmrFI CCNGG 5 cut(s) 249, 439, 1182, 1304, 1628
BmsI GCATC 3 cut(s) 323, 796, 1114
Bpu10I CCTNAGC 1 cut(s) 961
BpuEI CTTGAG 1 cut(s) 1057
BpuMI CCSGG 1 cut(s) 1304
Bsa29I ATCGAT 1 cut(s) 561
BsaBI GATNNNNATC 1 cut(s) 1407
BsaJI CCNNGG 3 cut(s) 1203, 1302, 1524
BsaWI WCCGGW 2 cut(s) 770, 793
Bsc4I CCNNNNNNNGG 4 cut(s) 793, 1094, 1483, 1539
Bse118I RCCGGY 1 cut(s) 1002
Bse1I ACTGG 3 cut(s) 315, 936, 1099
Bse3DI GCAATG 1 cut(s) 6
Bse8I GATNNNNATC 1 cut(s) 1407
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 4 cut(s) 249, 439, 1182, 1628
BseCI ATCGAT 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 1203, 1302, 1524
BseGI GGATG 6 cut(s) 524, 621, 750, 777, 1385, 1394
BseJI GATNNNNATC 1 cut(s) 1407
BseLI CCNNNNNNNGG 4 cut(s) 793, 1094, 1483, 1539
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 2 cut(s) 975, 1571
BseNI ACTGG 3 cut(s) 315, 936, 1099
BseRI GAGGAG 2 cut(s) 575, 1336
BseXI GCAGC 5 cut(s) 59, 202, 1340, 1343, 1606
BseYI CCCAGC 1 cut(s) 385
Bsh1236I CGCG 3 cut(s) 36, 1065, 1572
BshFI GGCC 3 cut(s) 496, 1098, 1307
BshVI ATCGAT 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 1248
BsiSI CCGG 4 cut(s) 771, 794, 1003, 1304
BslFI GGGAC 2 cut(s) 1071, 1625
BslI CCNNNNNNNGG 4 cut(s) 793, 1094, 1483, 1539
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 2 cut(s) 1071, 1625
BsnI GGCC 3 cut(s) 496, 1098, 1307
BsoBI CYCGRG 1 cut(s) 1248
Bsp13I TCCGGA 1 cut(s) 793
Bsp19I CCATGG 1 cut(s) 1524
Bsp68I TCGCGA 1 cut(s) 1065
BspACI CCGC 5 cut(s) 372, 1095, 1477, 1498, 1570
BspANI GGCC 3 cut(s) 496, 1098, 1307
BspCNI CTCAG 2 cut(s) 974, 1572
BspDI ATCGAT 1 cut(s) 561
BspEI TCCGGA 1 cut(s) 793
BspFNI CGCG 3 cut(s) 36, 1065, 1572
BspLI GGNNCC 4 cut(s) 687, 1186, 1345, 1603
BspMAI CTGCAG 2 cut(s) 352, 1342
BspPI GGATC 3 cut(s) 647, 1017, 1468
BspQI GCTCTTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 1002
BsrI ACTGG 3 cut(s) 315, 936, 1099
BssAI RCCGGY 1 cut(s) 1002
BssECI CCNNGG 3 cut(s) 1203, 1302, 1524
BssT1I CCWWGG 1 cut(s) 1524
Bst2UI CCWGG 4 cut(s) 249, 439, 1182, 1628
Bst4CI ACNGT 2 cut(s) 242, 522
Bst6I CTCTTC 3 cut(s) 172, 535, 593
BstAPI GCANNNNNTGC 2 cut(s) 1012, 1337
BstC8I GCNNGC 4 cut(s) 490, 494, 1004, 1342
BstDEI CTNAG 6 cut(s) 961, 1262, 1312, 1439, 1580, 1657
BstDSI CCRYGG 1 cut(s) 1524
BstEII GGTNACC 1 cut(s) 441
BstF5I GGATG 6 cut(s) 524, 621, 750, 777, 1385, 1394
BstFNI CGCG 3 cut(s) 36, 1065, 1572
BstHHI GCGC 2 cut(s) 38, 1125
BstMAI GTCTC 1 cut(s) 408
BstMWI GCNNNNNNNGC 7 cut(s) 755, 830, 1012, 1129, 1325, 1337, 1658
BstNI CCWGG 4 cut(s) 249, 439, 1182, 1628
BstNSI RCATGY 2 cut(s) 1015, 1382
BstPI GGTNACC 1 cut(s) 441
BstSCI CCNGG 5 cut(s) 247, 437, 1180, 1302, 1626
BstSFI CTRYAG 2 cut(s) 348, 1338
BstUI CGCG 3 cut(s) 36, 1065, 1572
BstV1I GCAGC 5 cut(s) 59, 202, 1340, 1343, 1606
BstX2I RGATCY 1 cut(s) 630
BstYI RGATCY 1 cut(s) 630
Bsu15I ATCGAT 1 cut(s) 561
BsuI GTATCC 1 cut(s) 1082
BsuRI GGCC 3 cut(s) 496, 1098, 1307
BsuTUI ATCGAT 1 cut(s) 561
BtgI CCRYGG 1 cut(s) 1524
BtgZI GCGATG 1 cut(s) 896
BtsCI GGATG 6 cut(s) 524, 621, 750, 777, 1385, 1394
BtsIMutI CAGTG 1 cut(s) 943
BtuMI TCGCGA 1 cut(s) 1065
Cac8I GCNNGC 4 cut(s) 490, 494, 1004, 1342
CaiI CAGNNNCTG 1 cut(s) 1337
CfoI GCGC 2 cut(s) 38, 1125
Cfr10I RCCGGY 1 cut(s) 1002
Cfr13I GGNCC 1 cut(s) 298
ClaI ATCGAT 1 cut(s) 561
CsiI ACCWGGT 1 cut(s) 437
Csp6I GTAC 2 cut(s) 729, 1228
CviAII CATG 5 cut(s) 58, 358, 1012, 1379, 1525
CviQI GTAC 2 cut(s) 729, 1228
DdeI CTNAG 6 cut(s) 961, 1262, 1312, 1439, 1580, 1657
EaeI YGGCCR 2 cut(s) 1096, 1305
Eam1104I CTCTTC 3 cut(s) 172, 535, 593
EarI CTCTTC 3 cut(s) 172, 535, 593
Eco130I CCWWGG 1 cut(s) 1524
Eco32I GATATC 2 cut(s) 1116, 1545
Eco47I GGWCC 1 cut(s) 298
Eco88I CYCGRG 1 cut(s) 1248
Eco91I GGTNACC 1 cut(s) 441
EcoO65I GGTNACC 1 cut(s) 441
EcoRI GAATTC 1 cut(s) 1487
EcoRII CCWGG 4 cut(s) 247, 437, 1180, 1626
EcoRV GATATC 2 cut(s) 1116, 1545
EcoT14I CCWWGG 1 cut(s) 1524
ErhI CCWWGG 1 cut(s) 1524
FaeI CATG 5 cut(s) 61, 361, 1015, 1382, 1528
FalI AAGNNNNNCTT 2 cut(s) 154, 186
FaqI GGGAC 2 cut(s) 1071, 1625
FatI CATG 5 cut(s) 57, 357, 1011, 1378, 1524
FauI CCCGC 1 cut(s) 1491
FauNDI CATATG 1 cut(s) 1110
FbaI TGATCA 1 cut(s) 1594
Fnu4HI GCNGC 6 cut(s) 73, 191, 1096, 1329, 1332, 1620
FokI GGATG 6 cut(s) 511, 608, 737, 764, 1372, 1381
Fsp4HI GCNGC 6 cut(s) 73, 191, 1096, 1329, 1332, 1620
FspBI CTAG 4 cut(s) 20, 726, 732, 1236
GlaI GCGC 2 cut(s) 37, 1124
GluI GCNGC 6 cut(s) 73, 191, 1096, 1329, 1332, 1620
GsaI CCCAGC 1 cut(s) 389
HaeIII GGCC 3 cut(s) 496, 1098, 1307
HapII CCGG 4 cut(s) 771, 794, 1003, 1304
HhaI GCGC 2 cut(s) 38, 1125
Hin1II CATG 5 cut(s) 61, 361, 1015, 1382, 1528
Hin6I GCGC 2 cut(s) 36, 1123
HinP1I GCGC 2 cut(s) 36, 1123
HindIII AAGCTT 5 cut(s) 450, 756, 1042, 1150, 1513
HinfI GANTC 3 cut(s) 252, 1048, 1391
HpaII CCGG 4 cut(s) 771, 794, 1003, 1304
HphI GGTGA 2 cut(s) 840, 1483
Hpy188I TCNGA 6 cut(s) 345, 652, 1053, 1120, 1390, 1549
HpyAV CCTTC 9 cut(s) 20, 56, 120, 861, 903, 1042, 1061, 1633, 1635
HpyCH4III ACNGT 2 cut(s) 242, 522
HpyCH4IV ACGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 7 cut(s) 755, 830, 1012, 1129, 1325, 1337, 1658
HpyF3I CTNAG 6 cut(s) 961, 1262, 1312, 1439, 1580, 1657
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 5 cut(s) 61, 361, 1015, 1382, 1528
HspAI GCGC 2 cut(s) 36, 1123
Kpn2I TCCGGA 1 cut(s) 793
KroI GCCGGC 1 cut(s) 1002
KroNI GCCGGC 1 cut(s) 1004
Ksp22I TGATCA 1 cut(s) 1594
LguI GCTCTTC 1 cut(s) 172
LmnI GCTCC 3 cut(s) 1120, 1316, 1349
Lsp1109I GCAGC 5 cut(s) 59, 202, 1340, 1343, 1606
LweI GCATC 3 cut(s) 323, 796, 1114
MabI ACCWGGT 1 cut(s) 437
MaeI CTAG 4 cut(s) 20, 726, 732, 1236
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 441
MflI RGATCY 1 cut(s) 630
MmeI TCCRAC 2 cut(s) 40, 623
MroI TCCGGA 1 cut(s) 793
MroNI GCCGGC 1 cut(s) 1002
MroXI GAANNNNTTC 2 cut(s) 718, 1152
MseI TTAA 2 cut(s) 675, 1586
MspI CCGG 4 cut(s) 771, 794, 1003, 1304
MspR9I CCNGG 5 cut(s) 249, 439, 1182, 1304, 1628
MvaI CCWGG 4 cut(s) 249, 439, 1182, 1628
MvnI CGCG 3 cut(s) 36, 1065, 1572
MwoI GCNNNNNNNGC 7 cut(s) 755, 830, 1012, 1129, 1325, 1337, 1658
NaeI GCCGGC 1 cut(s) 1004
NciI CCSGG 1 cut(s) 1304
NcoI CCATGG 1 cut(s) 1524
NdeI CATATG 1 cut(s) 1110
NgoMIV GCCGGC 1 cut(s) 1002
NlaIII CATG 5 cut(s) 61, 361, 1015, 1382, 1528
NlaIV GGNNCC 4 cut(s) 687, 1186, 1345, 1603
NmeAIII GCCGAG 1 cut(s) 166
NruI TCGCGA 1 cut(s) 1065
NspI RCATGY 2 cut(s) 1015, 1382
PaeR7I CTCGAG 1 cut(s) 1248
PciI ACATGT 1 cut(s) 1378
PciSI GCTCTTC 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 1004
PdmI GAANNNNTTC 2 cut(s) 718, 1152
PfeI GAWTC 3 cut(s) 252, 1048, 1391
PflMI CCANNNNNTGG 1 cut(s) 1539
PfoI TCCNGGA 2 cut(s) 247, 1626
PkrI GCNGC 6 cut(s) 74, 192, 1097, 1330, 1333, 1621
PscI ACATGT 1 cut(s) 1378
Psp1406I AACGTT 1 cut(s) 225
Psp6I CCWGG 4 cut(s) 247, 437, 1180, 1626
PspEI GGTNACC 1 cut(s) 441
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 4 cut(s) 247, 437, 1180, 1626
PspN4I GGNNCC 4 cut(s) 687, 1186, 1345, 1603
PspPI GGNCC 1 cut(s) 298
PspXI VCTCGAGB 1 cut(s) 1248
PsrI GAACNNNNNNTAC 2 cut(s) 706, 738
PstI CTGCAG 2 cut(s) 352, 1342
PstNI CAGNNNCTG 1 cut(s) 1337
PsuI RGATCY 1 cut(s) 630
RruI TCGCGA 1 cut(s) 1065
RsaI GTAC 2 cut(s) 730, 1229
RsaNI GTAC 2 cut(s) 729, 1228
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 2 cut(s) 675, 1586
SatI GCNGC 6 cut(s) 73, 191, 1096, 1329, 1332, 1620
Sau96I GGNCC 1 cut(s) 298
ScaI AGTACT 2 cut(s) 730, 1229
ScrFI CCNGG 5 cut(s) 249, 439, 1182, 1304, 1628
SexAI ACCWGGT 1 cut(s) 437
SfaNI GCATC 3 cut(s) 323, 796, 1114
SfcI CTRYAG 2 cut(s) 348, 1338
Sfr274I CTCGAG 1 cut(s) 1248
SinI GGWCC 1 cut(s) 298
SlaI CTCGAG 1 cut(s) 1248
SmlI CTYRAG 2 cut(s) 1036, 1248
SmoI CTYRAG 2 cut(s) 1036, 1248
SpeI ACTAGT 3 cut(s) 725, 731, 1235
SsiI CCGC 5 cut(s) 372, 1095, 1477, 1498, 1570
SspI AATATT 1 cut(s) 575
SspMI CTAG 4 cut(s) 20, 726, 732, 1236
StyD4I CCNGG 5 cut(s) 247, 437, 1180, 1302, 1626
StyI CCWWGG 1 cut(s) 1524
TaaI ACNGT 2 cut(s) 242, 522
TaiI ACGT 1 cut(s) 228
TaqI TCGA 7 cut(s) 49, 132, 231, 561, 766, 801, 1249
TatI WGTACW 2 cut(s) 728, 1227
TauI GCSGC 1 cut(s) 1098
TfiI GAWTC 3 cut(s) 252, 1048, 1391
Tru1I TTAA 2 cut(s) 675, 1586
Tru9I TTAA 2 cut(s) 675, 1586
TscAI CASTG 1 cut(s) 943
TseI GCWGC 5 cut(s) 72, 190, 1328, 1331, 1619
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 1 cut(s) 943
Van91I CCANNNNNTGG 1 cut(s) 1539
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 2 cut(s) 1487, 1555
XceI RCATGY 2 cut(s) 1015, 1382
XhoI CTCGAG 1 cut(s) 1248
XmnI GAANNNNTTC 2 cut(s) 718, 1152
XspI CTAG 4 cut(s) 20, 726, 732, 1236
ZrmI AGTACT 2 cut(s) 730, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.