Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024846.1

Orthogroup ID

OG0009224

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1007

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024846.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

aaagacaaagcatcagtgcttacaactgcaagggactacttaactagtttaaaagctcaagttgatgagcttagcaaacgaaaccagcagttagaggcagctgcaaggcttgtagcaaaagaagatcaagaagaagaaacagctggctcctcatcaacagaaagagttactgtgacgcttacgcatgtatctggctcgagcacagatcaagatcagcaaattattgccttgcaagtgattgtgagatcaggagaatgttcgaccgaagatatggtaattagaatcttggaattcttgaagcaagttaagaacttgagcttgatgtccatgaaagcaagtacttggaaaacagaattacatcccaacatcaaccgcgtggtcttgagattaagagttgatgatcaggcgaacgaatgggacgagtctgccttccaggaagcagtgagaagggtggttgctgacttggcacaaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

158

Amino Acids

17.76

Weight (kDa)

5.3

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56960 AT5G56960
fragaria_vesca	FvH4_1g07710 FvH4_1g07710 FvH4_1g07710
malus_domestica	MD02G1081600.v1.1 MD15G1208900.v1.1
prunus_persica	Prupe.7G207500_v2.0.a1
pyrus_communis	pycom02g06440 pycom15g18520
rosa_chinensis	RchiOBHm_Chr2g0093571
rosa_laevigata	RLG00000016419
rosa_multiflora	Rmu_sc0006964.1_g000006 Rmu_sc0024845.1_g000001 Rmu_sc0024846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147970
rosa_rugosa	Rorug02G0037700
rosa_samantha	Rh2AG084200 Rh2BG084800 Rh2CG087100 Rh2DG082800
rosa_wichuraiana	Rw2G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	375
AciI	CCGC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	298
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	5 cut(s)	56, 70, 101, 143, 318
AluI	AGCT	5 cut(s)	56, 70, 101, 143, 318
Alw21I	GWGCWC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	98, 101
ApoI	RAATTY	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	196
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	88, 110
BciT130I	CCWGG	1 cut(s)	434
BclI	TGATCA	1 cut(s)	400
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	2 cut(s)	99, 102
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	2 cut(s)	100, 103
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	20
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	3 cut(s)	42, 334, 403
BsaBI	GATNNNNATC	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	434
BseGI	GGATG	1 cut(s)	358
BseJI	GATNNNNATC	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	88, 110
Bsh1236I	CGCG	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	196
BslFI	GGGAC	2 cut(s)	47, 431
BsmFI	GGGAC	2 cut(s)	47, 431
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	5 cut(s)	124, 205, 211, 245, 400
Bsp1720I	GCTNAGC	1 cut(s)	71
BspACI	CCGC	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	148
BssMI	GATC	5 cut(s)	124, 205, 211, 245, 400
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	375
BstKTI	GATC	5 cut(s)	127, 208, 214, 248, 403
BstMBI	GATC	5 cut(s)	124, 205, 211, 245, 400
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	88, 110
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	21, 447
Cac8I	GCNNGC	1 cut(s)	145
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	2 cut(s)	185, 328
CviJI	RGCY	8 cut(s)	56, 70, 101, 109, 143, 147, 195, 318
CviKI_1	RGCY	8 cut(s)	56, 70, 101, 109, 143, 147, 195, 318
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	5 cut(s)	126, 207, 213, 247, 402
DpnII	GATC	5 cut(s)	124, 205, 211, 245, 400
DraI	TTTAAA	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	432
FaeI	CATG	2 cut(s)	188, 331
FaiI	YATR	3 cut(s)	186, 272, 329
FaqI	GGGAC	2 cut(s)	47, 431
FatI	CATG	2 cut(s)	184, 327
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	99, 102
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	99, 102
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	2 cut(s)	99, 102
HgaI	GACGC	1 cut(s)	184
Hin1II	CATG	2 cut(s)	188, 331
HinfI	GANTC	2 cut(s)	282, 422
Hpy188III	TCNNGA	5 cut(s)	128, 209, 249, 295, 382
HpyAV	CCTTC	2 cut(s)	439, 441
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	3 cut(s)	29, 104, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	188, 331
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	5 cut(s)	124, 205, 211, 245, 400
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	7 cut(s)	98, 129, 177, 234, 389, 419, 446
Lsp1109I	GCAGC	2 cut(s)	88, 110
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	166, 172
MalI	GATC	5 cut(s)	126, 207, 213, 247, 402
MboI	GATC	5 cut(s)	124, 205, 211, 245, 400
MboII	GAAGA	4 cut(s)	134, 143, 146, 278
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	4 cut(s)	219, 276, 290, 353
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	2 cut(s)	88, 160
MseI	TTAA	4 cut(s)	41, 50, 306, 389
MspA1I	CMGCKG	2 cut(s)	101, 143
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeII	GATC	5 cut(s)	124, 205, 211, 245, 400
NlaIII	CATG	2 cut(s)	188, 331
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	2 cut(s)	100, 103
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	148
PspXI	VCTCGAGB	1 cut(s)	196
PvuII	CAGCTG	2 cut(s)	101, 143
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SaqAI	TTAA	4 cut(s)	41, 50, 306, 389
SatI	GCNGC	2 cut(s)	99, 102
Sau3AI	GATC	5 cut(s)	124, 205, 211, 245, 400
ScaI	AGTACT	1 cut(s)	340
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	5 cut(s)	58, 72, 103, 145, 320
SfaNI	GCATC	1 cut(s)	20
Sfr274I	CTCGAG	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	196
SmlI	CTYRAG	4 cut(s)	57, 196, 313, 382
SmoI	CTYRAG	4 cut(s)	57, 196, 313, 382
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	4 cut(s)	219, 276, 290, 353
SsiI	CCGC	1 cut(s)	373
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	197, 260
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	4 cut(s)	219, 276, 290, 353
TatI	WGTACW	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	4 cut(s)	41, 50, 306, 389
Tru9I	TTAA	4 cut(s)	41, 50, 306, 389
TscAI	CASTG	2 cut(s)	21, 447
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	98, 101
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	21, 447
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	188
XhoI	CTCGAG	1 cut(s)	196
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.