MD15G1208900.v1.1

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
16754154 .. 16757315
3162 bp
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UTR
Exon/CDS
Intron
MD15G1208900.v1.1.491

Sequence Viewer

Length: 1623 bp
ATGGACACTGCTTTCCACCTCGATGAAGGTTCTCGCGCCAATTTCCTTCGACTTGTCATGCAATCTTTTGGCTGCTTTTACATTTGCTTGTGGTCTTATATGCCACCTCCTTCTAACTGCTTATTCTTTCTCGATGGTGTCTATGATGAAGAAAATCAACCAAGCTCTTCTTCCGGCAGTTTGGCTCGGCGGCTTTTCGATGAGTATCGGCTATCAGTTTTCAAAGTCTTCGAAAACGAGTGTGTTCCAGGATTCGCTTTCAGGAATAGTATTTCATTTGTGGAGTTGCAAGAAATGGACCTACAAAGACTGGCATCAGATGATAAACAGAGGCAATTTTATCAGATAAATATAAAAAGAGAAATGATGAGAACCTGGTTGCCAGAAGTTTTTCCAGGACAATTATCTCCACATACAGAAGTTGCCAGCAGGTCAATCAACGGTCAGCAACAATATCCACTTTCATCATCTTCATCTTCTTTGAGATCACTTTCCACAATGGATAGTCCTGAATATTCCTCCCTCCTCTTCAACATTCCCACCACCACTACCACCATTTCTCATAACATCCCAGAACTCTTTACACAATTATCTTCCAATCCCTTGCAACCAATCAATATTAGTTCATTGGAACCTTTACCAACCAAAAATCTCATTACTACTACTTCTTCTACTAGTACTACTAGTCCTCATCAACAAGCCATTCAAGCAATTTCTCGAATCCGAAACATCCAATTCCCAACTCCGGAGATCGAAGATGCCACGATGACAAGAGCCATCCTTGCAGTTCTGTCTTCTTCTCCATATCAACCACCCCCACAAACTAATCCACCTTCTTCTTCTTCTACTACTGATCATCACTTGCAAACTCCAAGGGCCAGTGCTTTCAAGAGTTACAACACCTCAGTTTTAGCCCCAAGAACGCAAATGAGTGCTAATTTACGCCAGCAAAACATGCACAAGCGATCCATTTCCTTCTTGAGAAGCTTGAATCTAACGAGGCTTCGCGAAGGTATCCAAGCCACCCGCCCCACAAGCAGCCAGTTGCATCATATGATATCAGAGCGCAAAAGGCGTGAGAAGCTCAATGAAAGCTTTCATACATTGAAATCACTACTTCCTCCGGGAACCAAGAAAGACAAAGCCTCAGTTCTTACAACTGCAAGGGAGTACTTGACTAGTTTAAAAGCTCAAGTTGCTGAGCTTAGCAAAAGAAACCAGCAGTTAGAGGCAAGGCTCTTGCCACTTGCCAGCTTAGGAGCTAATGAAGCAGCAGCAGCAGCTGCAGGCTCCTCAAATGAAAGATGTAGTCTTACGGTTACGCGTGTATCAACCGAATCATCCCCGGATCAAGATGAGCAAATTATTGACTTGCAAGTGATTCTAAGATCACAAGAGAGCTGCACCGAAGATATGGTGATCCGCATTTTGGAATTCTTGAAGCGGGTTGAGAATGTAAGCTTGATGTCCATGGAAGCCAATACTTGGATATCAGAATCAAATTTTAACATCAACCGCGTAATCTTGAGATTAAGAGTTGATCAGGGAACTGAATGGGACGAGGCTGCTTTCCAGGAAGCAGTGAGAAGGGTGGTTGCTGACTTAGTACGTAGGATAGACTAG

Protein Analysis

541

Amino Acids

60.95

Weight (kDa)

7.16

Isoelectric Point (pI)

70.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7050 PF23133 1 - 119 5.6e-44 Domain of unknown function (DUF7050)
HLH PF00010 350 - 395 1.6e-11 Helix-loop-helix DNA-binding domain
DUF7049 PF23132 433 - 535 8.4e-30 Domain of unknown function (DUF7049)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 420
AccB7I CCANNNNNTGG 1 cut(s) 1485
AccII CGCG 4 cut(s) 36, 1008, 1324, 1518
AccIII TCCGGA 1 cut(s) 745
AciI CCGC 5 cut(s) 190, 1027, 1423, 1444, 1516
AclWI GGATC 3 cut(s) 960, 1356, 1414
AcsI RAATTY 2 cut(s) 1433, 1501
AfaI GTAC 3 cut(s) 679, 1172, 1608
AfiI CCNNNNNNNGG 3 cut(s) 745, 1429, 1485
AflIII ACRYGT 1 cut(s) 1322
AgsI TTSAA 7 cut(s) 223, 532, 707, 889, 991, 1108, 1441
AhlI ACTAGT 3 cut(s) 674, 683, 1178
AjnI CCWGG 4 cut(s) 247, 374, 394, 1572
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
AlwI GGATC 3 cut(s) 960, 1356, 1414
AlwNI CAGNNNCTG 1 cut(s) 1283
Aor13HI TCCGGA 1 cut(s) 745
AoxI GGCC 1 cut(s) 876
ApeKI GCWGC 9 cut(s) 72, 1038, 1271, 1274, 1277, 1280, 1283, 1401, 1565
ApoI RAATTY 2 cut(s) 1433, 1501
Asp700I GAANNNNTTC 2 cut(s) 390, 1095
AspLEI GCGC 2 cut(s) 38, 1068
AspS9I GGNCC 2 cut(s) 298, 876
AsuC2I CCSGG 2 cut(s) 1125, 1346
AsuHPI GGTGA 1 cut(s) 1429
AsuII TTCGAA 1 cut(s) 231
AvaII GGWCC 1 cut(s) 298
BaeI ACNNNNGTAYC 2 cut(s) 1311, 1344
BbsI GAAGAC 2 cut(s) 220, 786
BbvI GCAGC 9 cut(s) 59, 1050, 1270, 1283, 1286, 1289, 1292, 1388, 1552
BccI CCATC 2 cut(s) 128, 785
BciT130I CCWGG 4 cut(s) 249, 376, 396, 1574
BciVI GTATCC 1 cut(s) 1025
BclI TGATCA 2 cut(s) 853, 1540
BcnI CCSGG 2 cut(s) 1125, 1346
BcuI ACTAGT 3 cut(s) 674, 683, 1178
BfaI CTAG 4 cut(s) 675, 684, 1179, 1621
BfmI CTRYAG 1 cut(s) 1284
BfuAI ACCTGC 1 cut(s) 420
BfuI GTATCC 1 cut(s) 1025
BlpI GCTNAGC 2 cut(s) 1200, 1205
BmcAI AGTACT 2 cut(s) 679, 1172
Bme1390I CCNGG 6 cut(s) 249, 376, 396, 1125, 1346, 1574
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 298, 876
BmiI GGNNCC 3 cut(s) 633, 1129, 1291
BmrFI CCNGG 6 cut(s) 249, 376, 396, 1125, 1346, 1574
BmsI GCATC 3 cut(s) 323, 748, 1057
BpiI GAAGAC 2 cut(s) 220, 786
Bpu10I CCTNAGC 1 cut(s) 1255
Bpu1102I GCTNAGC 2 cut(s) 1200, 1205
Bpu14I TTCGAA 1 cut(s) 231
BpuEI CTTGAG 3 cut(s) 1000, 1176, 1546
BpuMI CCSGG 2 cut(s) 1125, 1346
BsaAI YACGTR 1 cut(s) 1610
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 3 cut(s) 872, 1344, 1470
BsaWI WCCGGW 1 cut(s) 745
Bsc4I CCNNNNNNNGG 3 cut(s) 745, 1429, 1485
Bse1I ACTGG 3 cut(s) 315, 879, 1042
Bse8I GATNNNNATC 1 cut(s) 204
BseAI TCCGGA 1 cut(s) 745
BseBI CCWGG 4 cut(s) 249, 376, 396, 1574
BseDI CCNNGG 3 cut(s) 872, 1344, 1470
BseGI GGATG 4 cut(s) 567, 729, 777, 1340
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 3 cut(s) 745, 1429, 1485
BseMII CTCAG 3 cut(s) 918, 1161, 1191
BseNI ACTGG 3 cut(s) 315, 879, 1042
BseRI GAGGAG 2 cut(s) 515, 1282
BseXI GCAGC 9 cut(s) 59, 1050, 1270, 1283, 1286, 1289, 1292, 1388, 1552
BsgI GTGCAG 1 cut(s) 1387
Bsh1236I CGCG 4 cut(s) 36, 1008, 1324, 1518
BshFI GGCC 1 cut(s) 878
BsiSI CCGG 4 cut(s) 174, 746, 1124, 1346
BslFI GGGAC 1 cut(s) 1571
BslI CCNNNNNNNGG 3 cut(s) 745, 1429, 1485
BsmFI GGGAC 1 cut(s) 1571
BsnI GGCC 1 cut(s) 878
Bsp119I TTCGAA 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 745
Bsp143I GATC 8 cut(s) 485, 750, 853, 965, 1348, 1388, 1419, 1540
Bsp1720I GCTNAGC 2 cut(s) 1200, 1205
Bsp19I CCATGG 1 cut(s) 1470
Bsp68I TCGCGA 1 cut(s) 1008
BspACI CCGC 5 cut(s) 190, 1027, 1423, 1444, 1516
BspANI GGCC 1 cut(s) 878
BspCNI CTCAG 3 cut(s) 917, 1160, 1192
BspEI TCCGGA 1 cut(s) 745
BspFNI CGCG 4 cut(s) 36, 1008, 1324, 1518
BspLI GGNNCC 3 cut(s) 633, 1129, 1291
BspMAI CTGCAG 1 cut(s) 1288
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 3 cut(s) 960, 1356, 1414
BspQI GCTCTTC 1 cut(s) 172
BspT104I TTCGAA 1 cut(s) 231
BsrI ACTGG 3 cut(s) 315, 879, 1042
BssECI CCNNGG 3 cut(s) 872, 1344, 1470
BssMI GATC 8 cut(s) 485, 750, 853, 965, 1348, 1388, 1419, 1540
BssT1I CCWWGG 2 cut(s) 872, 1470
Bst2UI CCWGG 4 cut(s) 249, 376, 396, 1574
Bst4CI ACNGT 2 cut(s) 443, 1318
Bst6I CTCTTC 2 cut(s) 172, 533
BstAPI GCANNNNNTGC 2 cut(s) 955, 1283
BstBAI YACGTR 1 cut(s) 1610
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 4 cut(s) 427, 947, 1252, 1288
BstDEI CTNAG 7 cut(s) 904, 1147, 1200, 1205, 1255, 1385, 1603
BstDSI CCRYGG 1 cut(s) 1470
BstF5I GGATG 4 cut(s) 567, 729, 777, 1340
BstFNI CGCG 4 cut(s) 36, 1008, 1324, 1518
BstHHI GCGC 2 cut(s) 38, 1068
BstKTI GATC 8 cut(s) 488, 753, 856, 968, 1351, 1391, 1422, 1543
BstMBI GATC 8 cut(s) 485, 750, 853, 965, 1348, 1388, 1419, 1540
BstNI CCWGG 4 cut(s) 249, 376, 396, 1574
BstNSI RCATGY 1 cut(s) 958
BstSCI CCNGG 6 cut(s) 247, 374, 394, 1123, 1344, 1572
BstSFI CTRYAG 1 cut(s) 1284
BstSNI TACGTA 1 cut(s) 1610
BstUI CGCG 4 cut(s) 36, 1008, 1324, 1518
BstV1I GCAGC 9 cut(s) 59, 1050, 1270, 1283, 1286, 1289, 1292, 1388, 1552
BstV2I GAAGAC 2 cut(s) 220, 786
BsuI GTATCC 1 cut(s) 1025
BsuRI GGCC 1 cut(s) 878
BtgI CCRYGG 1 cut(s) 1470
BtsCI GGATG 4 cut(s) 567, 729, 777, 1340
BtsI GCAGTG 2 cut(s) 6, 1587
BtsIMutI CAGTG 3 cut(s) 6, 886, 1587
BtuMI TCGCGA 1 cut(s) 1008
BveI ACCTGC 1 cut(s) 420
Cac8I GCNNGC 4 cut(s) 427, 947, 1252, 1288
CaiI CAGNNNCTG 1 cut(s) 1283
CfoI GCGC 2 cut(s) 38, 1068
Cfr13I GGNCC 2 cut(s) 298, 876
CsiI ACCWGGT 1 cut(s) 374
Csp6I GTAC 3 cut(s) 678, 1171, 1607
CviAII CATG 3 cut(s) 58, 955, 1471
CviQI GTAC 3 cut(s) 678, 1171, 1607
DdeI CTNAG 7 cut(s) 904, 1147, 1200, 1205, 1255, 1385, 1603
DpnI GATC 8 cut(s) 487, 752, 855, 967, 1350, 1390, 1421, 1542
DpnII GATC 8 cut(s) 485, 750, 853, 965, 1348, 1388, 1419, 1540
DraI TTTAAA 1 cut(s) 1185
Eam1104I CTCTTC 2 cut(s) 172, 533
EarI CTCTTC 2 cut(s) 172, 533
Eco105I TACGTA 1 cut(s) 1610
Eco130I CCWWGG 2 cut(s) 872, 1470
Eco32I GATATC 2 cut(s) 1059, 1491
Eco47I GGWCC 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 1433
EcoRII CCWGG 4 cut(s) 247, 374, 394, 1572
EcoRV GATATC 2 cut(s) 1059, 1491
EcoT14I CCWWGG 2 cut(s) 872, 1470
ErhI CCWWGG 2 cut(s) 872, 1470
FaeI CATG 3 cut(s) 61, 958, 1474
FalI AAGNNNNNCTT 2 cut(s) 154, 186
FaqI GGGAC 1 cut(s) 1571
FatI CATG 3 cut(s) 57, 954, 1470
FauI CCCGC 2 cut(s) 1034, 1437
FauNDI CATATG 1 cut(s) 1053
FbaI TGATCA 2 cut(s) 853, 1540
FokI GGATG 4 cut(s) 554, 716, 764, 1327
FspBI CTAG 4 cut(s) 675, 684, 1179, 1621
GlaI GCGC 2 cut(s) 37, 1067
HaeIII GGCC 1 cut(s) 878
HapII CCGG 4 cut(s) 174, 746, 1124, 1346
HhaI GCGC 2 cut(s) 38, 1068
Hin1II CATG 3 cut(s) 61, 958, 1474
Hin6I GCGC 2 cut(s) 36, 1066
HinP1I GCGC 2 cut(s) 36, 1066
HindIII AAGCTT 3 cut(s) 985, 1093, 1459
HinfI GANTC 6 cut(s) 252, 720, 991, 1337, 1381, 1496
HpaII CCGG 4 cut(s) 174, 746, 1124, 1346
HphI GGTGA 1 cut(s) 1429
Hpy188I TCNGA 5 cut(s) 319, 345, 725, 1063, 1495
HpyAV CCTTC 7 cut(s) 20, 56, 120, 843, 985, 1004, 1581
HpyCH4III ACNGT 2 cut(s) 443, 1318
HpyCH4IV ACGT 1 cut(s) 1609
HpyF3I CTNAG 7 cut(s) 904, 1147, 1200, 1205, 1255, 1385, 1603
HpySE526I ACGT 1 cut(s) 1609
Hsp92II CATG 3 cut(s) 61, 958, 1474
HspAI GCGC 2 cut(s) 36, 1066
Kpn2I TCCGGA 1 cut(s) 745
Ksp22I TGATCA 2 cut(s) 853, 1540
Kzo9I GATC 8 cut(s) 485, 750, 853, 965, 1348, 1388, 1419, 1540
LguI GCTCTTC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 1259, 1295
Lsp1109I GCAGC 9 cut(s) 59, 1050, 1270, 1283, 1286, 1289, 1292, 1388, 1552
LweI GCATC 3 cut(s) 323, 748, 1057
MabI ACCWGGT 1 cut(s) 374
MaeI CTAG 4 cut(s) 675, 684, 1179, 1621
MaeII ACGT 1 cut(s) 1609
MaeIII GTNAC 2 cut(s) 893, 1318
MalI GATC 8 cut(s) 487, 752, 855, 967, 1350, 1390, 1421, 1542
MboI GATC 8 cut(s) 485, 750, 853, 965, 1348, 1388, 1419, 1540
MluI ACGCGT 1 cut(s) 1322
MroI TCCGGA 1 cut(s) 745
MroXI GAANNNNTTC 2 cut(s) 390, 1095
MseI TTAA 3 cut(s) 1184, 1506, 1532
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 1283
MspI CCGG 4 cut(s) 174, 746, 1124, 1346
MspR9I CCNGG 6 cut(s) 249, 376, 396, 1125, 1346, 1574
MvaI CCWGG 4 cut(s) 249, 376, 396, 1574
MvnI CGCG 4 cut(s) 36, 1008, 1324, 1518
NciI CCSGG 2 cut(s) 1125, 1346
NcoI CCATGG 1 cut(s) 1470
NdeI CATATG 1 cut(s) 1053
NdeII GATC 8 cut(s) 485, 750, 853, 965, 1348, 1388, 1419, 1540
NlaIII CATG 3 cut(s) 61, 958, 1474
NlaIV GGNNCC 3 cut(s) 633, 1129, 1291
NmeAIII GCCGAG 1 cut(s) 166
NruI TCGCGA 1 cut(s) 1008
NspI RCATGY 1 cut(s) 958
NspV TTCGAA 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 172
PdmI GAANNNNTTC 2 cut(s) 390, 1095
PfeI GAWTC 6 cut(s) 252, 720, 991, 1337, 1381, 1496
PflMI CCANNNNNTGG 1 cut(s) 1485
PfoI TCCNGGA 4 cut(s) 247, 394, 1123, 1572
Ppu21I YACGTR 1 cut(s) 1610
Psp6I CCWGG 4 cut(s) 247, 374, 394, 1572
PspGI CCWGG 4 cut(s) 247, 374, 394, 1572
PspN4I GGNNCC 3 cut(s) 633, 1129, 1291
PspPI GGNCC 2 cut(s) 298, 876
PstI CTGCAG 1 cut(s) 1288
PstNI CAGNNNCTG 1 cut(s) 1283
PvuII CAGCTG 1 cut(s) 1283
RruI TCGCGA 1 cut(s) 1008
RsaI GTAC 3 cut(s) 679, 1172, 1608
RsaNI GTAC 3 cut(s) 678, 1171, 1607
RseI CAYNNNNRTG 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 3 cut(s) 1184, 1506, 1532
Sau3AI GATC 8 cut(s) 485, 750, 853, 965, 1348, 1388, 1419, 1540
Sau96I GGNCC 2 cut(s) 298, 876
ScaI AGTACT 2 cut(s) 679, 1172
ScrFI CCNGG 6 cut(s) 249, 376, 396, 1125, 1346, 1574
SexAI ACCWGGT 1 cut(s) 374
SfaNI GCATC 3 cut(s) 323, 748, 1057
SfcI CTRYAG 1 cut(s) 1284
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 3 cut(s) 979, 1191, 1525
SmoI CTYRAG 3 cut(s) 979, 1191, 1525
SnaBI TACGTA 1 cut(s) 1610
SpeI ACTAGT 3 cut(s) 674, 683, 1178
SsiI CCGC 5 cut(s) 190, 1027, 1423, 1444, 1516
SspI AATATT 2 cut(s) 515, 619
SspMI CTAG 4 cut(s) 675, 684, 1179, 1621
StyD4I CCNGG 6 cut(s) 247, 374, 394, 1123, 1344, 1572
StyI CCWWGG 2 cut(s) 872, 1470
TaaI ACNGT 2 cut(s) 443, 1318
TaiI ACGT 1 cut(s) 1612
TaqI TCGA 7 cut(s) 21, 49, 132, 198, 231, 718, 753
TatI WGTACW 2 cut(s) 677, 1170
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 6 cut(s) 252, 720, 991, 1337, 1381, 1496
Tru1I TTAA 3 cut(s) 1184, 1506, 1532
Tru9I TTAA 3 cut(s) 1184, 1506, 1532
TscAI CASTG 3 cut(s) 13, 886, 1587
TseI GCWGC 9 cut(s) 72, 1038, 1271, 1274, 1277, 1280, 1283, 1401, 1565
TspRI CASTG 3 cut(s) 13, 886, 1587
Van91I CCANNNNNTGG 1 cut(s) 1485
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 2 cut(s) 1433, 1501
XceI RCATGY 1 cut(s) 958
XmnI GAANNNNTTC 2 cut(s) 390, 1095
XspI CTAG 4 cut(s) 675, 684, 1179, 1621
ZrmI AGTACT 2 cut(s) 679, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.