transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G56960 AT5G56960 |
| fragaria_vesca | FvH4_1g07710 FvH4_1g07710 FvH4_1g07710 |
| malus_domestica | MD02G1081600.v1.1 MD15G1208900.v1.1 |
| prunus_persica | Prupe.7G207500_v2.0.a1 |
| pyrus_communis | pycom02g06440 pycom15g18520 |
| rosa_chinensis | RchiOBHm_Chr2g0093571 |
| rosa_laevigata | RLG00000016419 |
| rosa_multiflora | Rmu_sc0006964.1_g000006 Rmu_sc0024845.1_g000001 Rmu_sc0024846.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00147970 |
| rosa_rugosa | Rorug02G0037700 |
| rosa_samantha | Rh2AG084200 Rh2BG084800 Rh2CG087100 Rh2DG082800 |
| rosa_wichuraiana | Rw2G007120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 420 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1485 |
| AccII | CGCG | 4 cut(s) | 36, 1008, 1324, 1518 |
| AccIII | TCCGGA | 1 cut(s) | 745 |
| AciI | CCGC | 5 cut(s) | 190, 1027, 1423, 1444, 1516 |
| AclWI | GGATC | 3 cut(s) | 960, 1356, 1414 |
| AcsI | RAATTY | 2 cut(s) | 1433, 1501 |
| AfaI | GTAC | 3 cut(s) | 679, 1172, 1608 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 745, 1429, 1485 |
| AflIII | ACRYGT | 1 cut(s) | 1322 |
| AgsI | TTSAA | 7 cut(s) | 223, 532, 707, 889, 991, 1108, 1441 |
| AhlI | ACTAGT | 3 cut(s) | 674, 683, 1178 |
| AjnI | CCWGG | 4 cut(s) | 247, 374, 394, 1572 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 154, 186 |
| AlwI | GGATC | 3 cut(s) | 960, 1356, 1414 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1283 |
| Aor13HI | TCCGGA | 1 cut(s) | 745 |
| AoxI | GGCC | 1 cut(s) | 876 |
| ApeKI | GCWGC | 9 cut(s) | 72, 1038, 1271, 1274, 1277, 1280, 1283, 1401, 1565 |
| ApoI | RAATTY | 2 cut(s) | 1433, 1501 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 390, 1095 |
| AspLEI | GCGC | 2 cut(s) | 38, 1068 |
| AspS9I | GGNCC | 2 cut(s) | 298, 876 |
| AsuC2I | CCSGG | 2 cut(s) | 1125, 1346 |
| AsuHPI | GGTGA | 1 cut(s) | 1429 |
| AsuII | TTCGAA | 1 cut(s) | 231 |
| AvaII | GGWCC | 1 cut(s) | 298 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1311, 1344 |
| BbsI | GAAGAC | 2 cut(s) | 220, 786 |
| BbvI | GCAGC | 9 cut(s) | 59, 1050, 1270, 1283, 1286, 1289, 1292, 1388, 1552 |
| BccI | CCATC | 2 cut(s) | 128, 785 |
| BciT130I | CCWGG | 4 cut(s) | 249, 376, 396, 1574 |
| BciVI | GTATCC | 1 cut(s) | 1025 |
| BclI | TGATCA | 2 cut(s) | 853, 1540 |
| BcnI | CCSGG | 2 cut(s) | 1125, 1346 |
| BcuI | ACTAGT | 3 cut(s) | 674, 683, 1178 |
| BfaI | CTAG | 4 cut(s) | 675, 684, 1179, 1621 |
| BfmI | CTRYAG | 1 cut(s) | 1284 |
| BfuAI | ACCTGC | 1 cut(s) | 420 |
| BfuI | GTATCC | 1 cut(s) | 1025 |
| BlpI | GCTNAGC | 2 cut(s) | 1200, 1205 |
| BmcAI | AGTACT | 2 cut(s) | 679, 1172 |
| Bme1390I | CCNGG | 6 cut(s) | 249, 376, 396, 1125, 1346, 1574 |
| Bme18I | GGWCC | 1 cut(s) | 298 |
| BmgT120I | GGNCC | 2 cut(s) | 298, 876 |
| BmiI | GGNNCC | 3 cut(s) | 633, 1129, 1291 |
| BmrFI | CCNGG | 6 cut(s) | 249, 376, 396, 1125, 1346, 1574 |
| BmsI | GCATC | 3 cut(s) | 323, 748, 1057 |
| BpiI | GAAGAC | 2 cut(s) | 220, 786 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1255 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1200, 1205 |
| Bpu14I | TTCGAA | 1 cut(s) | 231 |
| BpuEI | CTTGAG | 3 cut(s) | 1000, 1176, 1546 |
| BpuMI | CCSGG | 2 cut(s) | 1125, 1346 |
| BsaAI | YACGTR | 1 cut(s) | 1610 |
| BsaBI | GATNNNNATC | 1 cut(s) | 204 |
| BsaJI | CCNNGG | 3 cut(s) | 872, 1344, 1470 |
| BsaWI | WCCGGW | 1 cut(s) | 745 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 745, 1429, 1485 |
| Bse1I | ACTGG | 3 cut(s) | 315, 879, 1042 |
| Bse8I | GATNNNNATC | 1 cut(s) | 204 |
| BseAI | TCCGGA | 1 cut(s) | 745 |
| BseBI | CCWGG | 4 cut(s) | 249, 376, 396, 1574 |
| BseDI | CCNNGG | 3 cut(s) | 872, 1344, 1470 |
| BseGI | GGATG | 4 cut(s) | 567, 729, 777, 1340 |
| BseJI | GATNNNNATC | 1 cut(s) | 204 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 745, 1429, 1485 |
| BseMII | CTCAG | 3 cut(s) | 918, 1161, 1191 |
| BseNI | ACTGG | 3 cut(s) | 315, 879, 1042 |
| BseRI | GAGGAG | 2 cut(s) | 515, 1282 |
| BseXI | GCAGC | 9 cut(s) | 59, 1050, 1270, 1283, 1286, 1289, 1292, 1388, 1552 |
| BsgI | GTGCAG | 1 cut(s) | 1387 |
| Bsh1236I | CGCG | 4 cut(s) | 36, 1008, 1324, 1518 |
| BshFI | GGCC | 1 cut(s) | 878 |
| BsiSI | CCGG | 4 cut(s) | 174, 746, 1124, 1346 |
| BslFI | GGGAC | 1 cut(s) | 1571 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 745, 1429, 1485 |
| BsmFI | GGGAC | 1 cut(s) | 1571 |
| BsnI | GGCC | 1 cut(s) | 878 |
| Bsp119I | TTCGAA | 1 cut(s) | 231 |
| Bsp13I | TCCGGA | 1 cut(s) | 745 |
| Bsp143I | GATC | 8 cut(s) | 485, 750, 853, 965, 1348, 1388, 1419, 1540 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1200, 1205 |
| Bsp19I | CCATGG | 1 cut(s) | 1470 |
| Bsp68I | TCGCGA | 1 cut(s) | 1008 |
| BspACI | CCGC | 5 cut(s) | 190, 1027, 1423, 1444, 1516 |
| BspANI | GGCC | 1 cut(s) | 878 |
| BspCNI | CTCAG | 3 cut(s) | 917, 1160, 1192 |
| BspEI | TCCGGA | 1 cut(s) | 745 |
| BspFNI | CGCG | 4 cut(s) | 36, 1008, 1324, 1518 |
| BspLI | GGNNCC | 3 cut(s) | 633, 1129, 1291 |
| BspMAI | CTGCAG | 1 cut(s) | 1288 |
| BspMI | ACCTGC | 1 cut(s) | 420 |
| BspPI | GGATC | 3 cut(s) | 960, 1356, 1414 |
| BspQI | GCTCTTC | 1 cut(s) | 172 |
| BspT104I | TTCGAA | 1 cut(s) | 231 |
| BsrI | ACTGG | 3 cut(s) | 315, 879, 1042 |
| BssECI | CCNNGG | 3 cut(s) | 872, 1344, 1470 |
| BssMI | GATC | 8 cut(s) | 485, 750, 853, 965, 1348, 1388, 1419, 1540 |
| BssT1I | CCWWGG | 2 cut(s) | 872, 1470 |
| Bst2UI | CCWGG | 4 cut(s) | 249, 376, 396, 1574 |
| Bst4CI | ACNGT | 2 cut(s) | 443, 1318 |
| Bst6I | CTCTTC | 2 cut(s) | 172, 533 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 955, 1283 |
| BstBAI | YACGTR | 1 cut(s) | 1610 |
| BstBI | TTCGAA | 1 cut(s) | 231 |
| BstC8I | GCNNGC | 4 cut(s) | 427, 947, 1252, 1288 |
| BstDEI | CTNAG | 7 cut(s) | 904, 1147, 1200, 1205, 1255, 1385, 1603 |
| BstDSI | CCRYGG | 1 cut(s) | 1470 |
| BstF5I | GGATG | 4 cut(s) | 567, 729, 777, 1340 |
| BstFNI | CGCG | 4 cut(s) | 36, 1008, 1324, 1518 |
| BstHHI | GCGC | 2 cut(s) | 38, 1068 |
| BstKTI | GATC | 8 cut(s) | 488, 753, 856, 968, 1351, 1391, 1422, 1543 |
| BstMBI | GATC | 8 cut(s) | 485, 750, 853, 965, 1348, 1388, 1419, 1540 |
| BstNI | CCWGG | 4 cut(s) | 249, 376, 396, 1574 |
| BstNSI | RCATGY | 1 cut(s) | 958 |
| BstSCI | CCNGG | 6 cut(s) | 247, 374, 394, 1123, 1344, 1572 |
| BstSFI | CTRYAG | 1 cut(s) | 1284 |
| BstSNI | TACGTA | 1 cut(s) | 1610 |
| BstUI | CGCG | 4 cut(s) | 36, 1008, 1324, 1518 |
| BstV1I | GCAGC | 9 cut(s) | 59, 1050, 1270, 1283, 1286, 1289, 1292, 1388, 1552 |
| BstV2I | GAAGAC | 2 cut(s) | 220, 786 |
| BsuI | GTATCC | 1 cut(s) | 1025 |
| BsuRI | GGCC | 1 cut(s) | 878 |
| BtgI | CCRYGG | 1 cut(s) | 1470 |
| BtsCI | GGATG | 4 cut(s) | 567, 729, 777, 1340 |
| BtsI | GCAGTG | 2 cut(s) | 6, 1587 |
| BtsIMutI | CAGTG | 3 cut(s) | 6, 886, 1587 |
| BtuMI | TCGCGA | 1 cut(s) | 1008 |
| BveI | ACCTGC | 1 cut(s) | 420 |
| Cac8I | GCNNGC | 4 cut(s) | 427, 947, 1252, 1288 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1283 |
| CfoI | GCGC | 2 cut(s) | 38, 1068 |
| Cfr13I | GGNCC | 2 cut(s) | 298, 876 |
| CsiI | ACCWGGT | 1 cut(s) | 374 |
| Csp6I | GTAC | 3 cut(s) | 678, 1171, 1607 |
| CviAII | CATG | 3 cut(s) | 58, 955, 1471 |
| CviQI | GTAC | 3 cut(s) | 678, 1171, 1607 |
| DdeI | CTNAG | 7 cut(s) | 904, 1147, 1200, 1205, 1255, 1385, 1603 |
| DpnI | GATC | 8 cut(s) | 487, 752, 855, 967, 1350, 1390, 1421, 1542 |
| DpnII | GATC | 8 cut(s) | 485, 750, 853, 965, 1348, 1388, 1419, 1540 |
| DraI | TTTAAA | 1 cut(s) | 1185 |
| Eam1104I | CTCTTC | 2 cut(s) | 172, 533 |
| EarI | CTCTTC | 2 cut(s) | 172, 533 |
| Eco105I | TACGTA | 1 cut(s) | 1610 |
| Eco130I | CCWWGG | 2 cut(s) | 872, 1470 |
| Eco32I | GATATC | 2 cut(s) | 1059, 1491 |
| Eco47I | GGWCC | 1 cut(s) | 298 |
| EcoRI | GAATTC | 1 cut(s) | 1433 |
| EcoRII | CCWGG | 4 cut(s) | 247, 374, 394, 1572 |
| EcoRV | GATATC | 2 cut(s) | 1059, 1491 |
| EcoT14I | CCWWGG | 2 cut(s) | 872, 1470 |
| ErhI | CCWWGG | 2 cut(s) | 872, 1470 |
| FaeI | CATG | 3 cut(s) | 61, 958, 1474 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 154, 186 |
| FaqI | GGGAC | 1 cut(s) | 1571 |
| FatI | CATG | 3 cut(s) | 57, 954, 1470 |
| FauI | CCCGC | 2 cut(s) | 1034, 1437 |
| FauNDI | CATATG | 1 cut(s) | 1053 |
| FbaI | TGATCA | 2 cut(s) | 853, 1540 |
| FokI | GGATG | 4 cut(s) | 554, 716, 764, 1327 |
| FspBI | CTAG | 4 cut(s) | 675, 684, 1179, 1621 |
| GlaI | GCGC | 2 cut(s) | 37, 1067 |
| HaeIII | GGCC | 1 cut(s) | 878 |
| HapII | CCGG | 4 cut(s) | 174, 746, 1124, 1346 |
| HhaI | GCGC | 2 cut(s) | 38, 1068 |
| Hin1II | CATG | 3 cut(s) | 61, 958, 1474 |
| Hin6I | GCGC | 2 cut(s) | 36, 1066 |
| HinP1I | GCGC | 2 cut(s) | 36, 1066 |
| HindIII | AAGCTT | 3 cut(s) | 985, 1093, 1459 |
| HinfI | GANTC | 6 cut(s) | 252, 720, 991, 1337, 1381, 1496 |
| HpaII | CCGG | 4 cut(s) | 174, 746, 1124, 1346 |
| HphI | GGTGA | 1 cut(s) | 1429 |
| Hpy188I | TCNGA | 5 cut(s) | 319, 345, 725, 1063, 1495 |
| HpyAV | CCTTC | 7 cut(s) | 20, 56, 120, 843, 985, 1004, 1581 |
| HpyCH4III | ACNGT | 2 cut(s) | 443, 1318 |
| HpyCH4IV | ACGT | 1 cut(s) | 1609 |
| HpyF3I | CTNAG | 7 cut(s) | 904, 1147, 1200, 1205, 1255, 1385, 1603 |
| HpySE526I | ACGT | 1 cut(s) | 1609 |
| Hsp92II | CATG | 3 cut(s) | 61, 958, 1474 |
| HspAI | GCGC | 2 cut(s) | 36, 1066 |
| Kpn2I | TCCGGA | 1 cut(s) | 745 |
| Ksp22I | TGATCA | 2 cut(s) | 853, 1540 |
| Kzo9I | GATC | 8 cut(s) | 485, 750, 853, 965, 1348, 1388, 1419, 1540 |
| LguI | GCTCTTC | 1 cut(s) | 172 |
| LmnI | GCTCC | 2 cut(s) | 1259, 1295 |
| Lsp1109I | GCAGC | 9 cut(s) | 59, 1050, 1270, 1283, 1286, 1289, 1292, 1388, 1552 |
| LweI | GCATC | 3 cut(s) | 323, 748, 1057 |
| MabI | ACCWGGT | 1 cut(s) | 374 |
| MaeI | CTAG | 4 cut(s) | 675, 684, 1179, 1621 |
| MaeII | ACGT | 1 cut(s) | 1609 |
| MaeIII | GTNAC | 2 cut(s) | 893, 1318 |
| MalI | GATC | 8 cut(s) | 487, 752, 855, 967, 1350, 1390, 1421, 1542 |
| MboI | GATC | 8 cut(s) | 485, 750, 853, 965, 1348, 1388, 1419, 1540 |
| MluI | ACGCGT | 1 cut(s) | 1322 |
| MroI | TCCGGA | 1 cut(s) | 745 |
| MroXI | GAANNNNTTC | 2 cut(s) | 390, 1095 |
| MseI | TTAA | 3 cut(s) | 1184, 1506, 1532 |
| MslI | CAYNNNNRTG | 1 cut(s) | 21 |
| MspA1I | CMGCKG | 1 cut(s) | 1283 |
| MspI | CCGG | 4 cut(s) | 174, 746, 1124, 1346 |
| MspR9I | CCNGG | 6 cut(s) | 249, 376, 396, 1125, 1346, 1574 |
| MvaI | CCWGG | 4 cut(s) | 249, 376, 396, 1574 |
| MvnI | CGCG | 4 cut(s) | 36, 1008, 1324, 1518 |
| NciI | CCSGG | 2 cut(s) | 1125, 1346 |
| NcoI | CCATGG | 1 cut(s) | 1470 |
| NdeI | CATATG | 1 cut(s) | 1053 |
| NdeII | GATC | 8 cut(s) | 485, 750, 853, 965, 1348, 1388, 1419, 1540 |
| NlaIII | CATG | 3 cut(s) | 61, 958, 1474 |
| NlaIV | GGNNCC | 3 cut(s) | 633, 1129, 1291 |
| NmeAIII | GCCGAG | 1 cut(s) | 166 |
| NruI | TCGCGA | 1 cut(s) | 1008 |
| NspI | RCATGY | 1 cut(s) | 958 |
| NspV | TTCGAA | 1 cut(s) | 231 |
| PciSI | GCTCTTC | 1 cut(s) | 172 |
| PdmI | GAANNNNTTC | 2 cut(s) | 390, 1095 |
| PfeI | GAWTC | 6 cut(s) | 252, 720, 991, 1337, 1381, 1496 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1485 |
| PfoI | TCCNGGA | 4 cut(s) | 247, 394, 1123, 1572 |
| Ppu21I | YACGTR | 1 cut(s) | 1610 |
| Psp6I | CCWGG | 4 cut(s) | 247, 374, 394, 1572 |
| PspGI | CCWGG | 4 cut(s) | 247, 374, 394, 1572 |
| PspN4I | GGNNCC | 3 cut(s) | 633, 1129, 1291 |
| PspPI | GGNCC | 2 cut(s) | 298, 876 |
| PstI | CTGCAG | 1 cut(s) | 1288 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1283 |
| PvuII | CAGCTG | 1 cut(s) | 1283 |
| RruI | TCGCGA | 1 cut(s) | 1008 |
| RsaI | GTAC | 3 cut(s) | 679, 1172, 1608 |
| RsaNI | GTAC | 3 cut(s) | 678, 1171, 1607 |
| RseI | CAYNNNNRTG | 1 cut(s) | 21 |
| SapI | GCTCTTC | 1 cut(s) | 172 |
| SaqAI | TTAA | 3 cut(s) | 1184, 1506, 1532 |
| Sau3AI | GATC | 8 cut(s) | 485, 750, 853, 965, 1348, 1388, 1419, 1540 |
| Sau96I | GGNCC | 2 cut(s) | 298, 876 |
| ScaI | AGTACT | 2 cut(s) | 679, 1172 |
| ScrFI | CCNGG | 6 cut(s) | 249, 376, 396, 1125, 1346, 1574 |
| SexAI | ACCWGGT | 1 cut(s) | 374 |
| SfaNI | GCATC | 3 cut(s) | 323, 748, 1057 |
| SfcI | CTRYAG | 1 cut(s) | 1284 |
| SfuI | TTCGAA | 1 cut(s) | 231 |
| SinI | GGWCC | 1 cut(s) | 298 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 21 |
| SmlI | CTYRAG | 3 cut(s) | 979, 1191, 1525 |
| SmoI | CTYRAG | 3 cut(s) | 979, 1191, 1525 |
| SnaBI | TACGTA | 1 cut(s) | 1610 |
| SpeI | ACTAGT | 3 cut(s) | 674, 683, 1178 |
| SsiI | CCGC | 5 cut(s) | 190, 1027, 1423, 1444, 1516 |
| SspI | AATATT | 2 cut(s) | 515, 619 |
| SspMI | CTAG | 4 cut(s) | 675, 684, 1179, 1621 |
| StyD4I | CCNGG | 6 cut(s) | 247, 374, 394, 1123, 1344, 1572 |
| StyI | CCWWGG | 2 cut(s) | 872, 1470 |
| TaaI | ACNGT | 2 cut(s) | 443, 1318 |
| TaiI | ACGT | 1 cut(s) | 1612 |
| TaqI | TCGA | 7 cut(s) | 21, 49, 132, 198, 231, 718, 753 |
| TatI | WGTACW | 2 cut(s) | 677, 1170 |
| TauI | GCSGC | 1 cut(s) | 193 |
| TfiI | GAWTC | 6 cut(s) | 252, 720, 991, 1337, 1381, 1496 |
| Tru1I | TTAA | 3 cut(s) | 1184, 1506, 1532 |
| Tru9I | TTAA | 3 cut(s) | 1184, 1506, 1532 |
| TscAI | CASTG | 3 cut(s) | 13, 886, 1587 |
| TseI | GCWGC | 9 cut(s) | 72, 1038, 1271, 1274, 1277, 1280, 1283, 1401, 1565 |
| TspRI | CASTG | 3 cut(s) | 13, 886, 1587 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1485 |
| VpaK11BI | GGWCC | 1 cut(s) | 298 |
| XapI | RAATTY | 2 cut(s) | 1433, 1501 |
| XceI | RCATGY | 1 cut(s) | 958 |
| XmnI | GAANNNNTTC | 2 cut(s) | 390, 1095 |
| XspI | CTAG | 4 cut(s) | 675, 684, 1179, 1621 |
| ZrmI | AGTACT | 2 cut(s) | 679, 1172 |