Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009224

Physical Location & Seq

Genomic Coordinates Forward (+)

2940195 .. 2945127

Gene Structure 4933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0037700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3042 bp

ATGACCTCCATGAAAGAACCACCTCTCTCTCGTCGCAAAAAGCCCACTACTACCAACCACACCCAGCAGCCCAAGAAGCTCAAGCTCGTCTGCAGCTTCAACGGCGCATTCCACCCCCGGCCGCCGTCCGGGAAGCTCCGCTACATCGGCGGCGAGACCCGGATCATCTCCGTCGACCGGAACGTCGGGTTCTCCAAGCTCCGGTCGAAGATTGCCGATCTCTCCCCCAACATTGCCTCCTTCGTCATCAAGTACCAGCTCCCCGACTTCGGATCGAGCTCCGGCGCCGCCCTGCTCGTCCGCGTCGACTCCGACGACGACGTCCGACGCATGGTCGAAGCGTTCGAGAAGCTCGAGAGCTACGGTAAGTCCGCCAGACTCTGGCTCTTTGTTTGTAGCAATAGCAATGGTTATAGTAACGGAGTCGGATCGGGTCATGGGGTTGGGTCAGTGACCCGGACCCGGGTGGAGGGTGAGAAGGCGGCGGTTAAGAAACACGGCGATGAATCGCTGAGGAAGATGGTGTTGAAGCAGCAATTGCTGGCCAAGCAATCGGGTTTGGTTCGTGGGTTTGGTTTTAGTGAGAGTGATATGGAAGTTGGTGGCTTGGGTGAGACTAGGAAATGTGAGGTGCATGAACCTCTGCTTATAGATTTAGACCCTGATCGTGATGAACCGAAAATGGGGGAGTTGAATTCTGGCAACGTGGCTCGGTTTTCAGTGGCTAGGTCTAATCCATTGAACCTTAGAGATGTGAATTTGACGGTTGATCAAACTTTGGGGAGGTCTGGTCAGGTTTTGTGTAATGGGGTTGGGGTTGGGGTGGCTGATCAGTCAGTCTCGGCAATGCAGGGTTTGGAACCGGTGAATTACTCCGGTGTGAAGCCGGGGTGTAATGGTTGTGATGTTAAGAAGGATGTGGGGAAGAACGGAATTGCTAAAGTGAACAGAGAGAACATTATGCCTTGGGGAGCCAGTTGTAATTTAGTGAAGGATGGTTTGAGTTGTCATTCTTGTGGTGATTCTCCGCTGGAAACTGTGAATCAGTTGTATGCCGGCGATAGGGAGTGTGGTGGCAGCATTAGGAACCATAGGTTTGGCGCGAATGATACTAGACATCAGCGGTATAATCCATTTTGTGTTAGGAACCATAAGAGCAACACAGCTGAGATGGGGAACCATCTAACTGTTAGATTGGATGGGAGGCGCCTTTCGACAAGGAAATGCTTCCTTGGACTTAGGCCACATATGAGCATTGCAAAACAGGGGCAGTCTGTGAGAGTGTATCATCCCAATTCATGCAGGCATTATGCCGGTTTTTCTGAGGATGCATTGGCAGAAAGGGTGAGGATGATGAATTCTAGCTCAATCAAAGACAGGTCCTTGAGTGGTGTCCAACATACTAACCAGAAGCGAATTAAAGAGTATGGCCCTGGACTTTTACAGCATATGAATGTGAATCCCAAGGAATATTGCTTAGGTTATTATGGTGCGTTTACTAGAGTGGGTGATCAATCACTCTTGAACTGTGATGTTACTGACAATTTGTTTCCATCTGTGAGGACTATGGACACTCAGGAAAATCTTGTAACTGTTTCTGGTTTTGGAAAGTACGAAAGTGTTCATGGAGTGACCAGCAAATGCGAGCCTATTCATCGTGATCTTGACAAGGAGACATGCCTGAAAGACATTGTGAACGGTCGTAACACCTCTGGCACTATTGATAATAAGTTGCCTAATGAGGAAACAGTCATCAATTCTTCAGGCAATTCTAAAAATGGCAGTAATGACATGCAAGATTCATATAATGGAGTAACATGTTCGGTGAATATTTCTTTGCGTAACCTTTCACTGTCCAAAGAAGTGGAAGGTCCTCAGCTCTCTTCTCATGCTAGCTGTGTGGTGACTTCTGATACCTTGCTAAAACCTCAAGATCTCAGGGATGAAGGACAATTTATCTTGGGTCCTCAAGTCAAGGAATCAAATGGAGTTGCATCTAATCCTTCATTCCAGAATTCAGCTAAGACAGAGAAATGCAGTGTGCATGTTGAGGAGGTCCGACAGGACTCTTCATCTAGTTTAAGCTTTACCGAGAAGGCCAACCATGGAGAAAGTCTTAATTACTCCAAAGTAATTGGTGGAACCTCCAACGATCTGGCTGCATTTTATACTCATCTAGCCACTCGAGAGCTACAGACTATCAAAAACTCTGACCTTGAGTTTATAAAAGAGCTTGGTTCGGGCACATATGGAACAGTTTACCATGGGAAATGGAAGGGATCTAATGTTGCCATAAAAAAGATCAAGCCAAGTTGCTTTACAGATGGCGTATTGGAAGATCGATTGCTTGCTGACTTTTGGAAGGAAGCTCATATCTTAGGTCAACTTCACCATCCGAACGTTGTGGCATTCTATGGTGTAGTGACAGATGGACCAGTGACAAATTTGGCAACGGTGACAGAGTATATGGTGAATGGCTCCTTAAAACAAGTTTTGCGAAGGAAAGATCGGACTATTGATCGTAGGAAGAGGTTGATATTAGCAATGGATGCAGCCTTTGGTATGGAATATCTTCACGAGAAGAGCATAGTCCACTTTGATTTGAAATCACATAACTTTCTAGTGAATATGAGGGATCCTCAGCGACCAGTATGCAAGATTGGTGATCTGGGATTATCGAAAATCAAGCAGAGGACACTAGTCTCTGGTGGCGTACGAGGCACAGTACCATGGATGGCTCCAGAACTTTTGAATAGCAACAACAAGAACAATTTGGTGACAGAAAAGGTTGATGTATATTCATTTGGAATTGTTATGTGGGAACTGTTGACTGGGGAGGAGCCTTACGCAAACTTGCGCTCAGAGGAAATAATAGTTGGTATAATCAAAGGCAATCTCCGTCCTGAAATACCAAGCTGGTGTGATCCAACATGGAAATCATTGATGGAGAGATGTTGGTCATCTGATCCAGAATCTAGGCCACCCTTCTCAGAAATCTCAAAGGACTTGCGTGCAATGTCTGCTGCTTTGAACATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003952 GO:0004359 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CN_hydrolase NAD_synthase

Protein Analysis

1013

Amino Acids

111.85

Weight (kDa)

8.89

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	43 - 130	7.3e-09	PB1 domain
PK_Tyr_Ser-Thr	PF07714	739 - 1003	9.4e-64	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	740 - 1001	1.1e-47	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56960 AT5G56960
fragaria_vesca	FvH4_1g07710 FvH4_1g07710 FvH4_1g07710
malus_domestica	MD02G1081600.v1.1 MD15G1208900.v1.1
prunus_persica	Prupe.7G207500_v2.0.a1
pyrus_communis	pycom02g06440 pycom15g18520
rosa_chinensis	RchiOBHm_Chr2g0093571
rosa_laevigata	RLG00000016419
rosa_multiflora	Rmu_sc0006964.1_g000006 Rmu_sc0024845.1_g000001 Rmu_sc0024846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147970
rosa_rugosa	Rorug02G0037700
rosa_samantha	Rh2AG084200 Rh2BG084800 Rh2CG087100 Rh2DG082800
rosa_wichuraiana	Rw2G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2225
AasI	GACNNNNNNGTC	2 cut(s)	182, 320
AatII	GACGTC	1 cut(s)	324
AccB1I	GGYRCC	2 cut(s)	284, 1206
AccB7I	CCANNNNNTGG	1 cut(s)	381
AccI	GTMKAC	2 cut(s)	174, 306
AccII	CGCG	2 cut(s)	303, 1103
AclI	AACGTT	1 cut(s)	2400
AclWI	GGATC	8 cut(s)	170, 280, 436, 2287, 2630, 2643, 2918, 2960
AcoI	YGGCCR	2 cut(s)	119, 543
AcsI	RAATTY	5 cut(s)	694, 757, 1357, 2014, 2443
AcuI	CTGAAG	1 cut(s)	1746
AcyI	GRCGYC	3 cut(s)	285, 321, 1207
AfaI	GTAC	4 cut(s)	254, 1613, 2715, 2727
AflIII	ACRYGT	1 cut(s)	1817
AgeI	ACCGGT	1 cut(s)	862
AgsI	TTSAA	8 cut(s)	100, 529, 694, 742, 1525, 2605, 2752, 3031
AhdI	GACNNNNNGTC	1 cut(s)	332
AhlI	ACTAGT	1 cut(s)	2698
AjnI	CCWGG	1 cut(s)	1432
AjuI	GAANNNNNNNTTGG	2 cut(s)	2859, 2891
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	5 cut(s)	149, 608, 844, 1667, 2707
AlwI	GGATC	8 cut(s)	170, 280, 436, 2287, 2630, 2643, 2918, 2960
AlwNI	CAGNNNCTG	1 cut(s)	381
Ama87I	CYCGRG	3 cut(s)	353, 462, 2184
AoxI	GGCC	6 cut(s)	119, 543, 1241, 1429, 2097, 2978
ApeKI	GCWGC	7 cut(s)	67, 93, 532, 1077, 2159, 2552, 3023
ApoI	RAATTY	5 cut(s)	694, 757, 1357, 2014, 2443
AsiGI	ACCGGT	1 cut(s)	862
Asp700I	GAANNNNTTC	3 cut(s)	1226, 1620, 2571
AspLEI	GCGC	5 cut(s)	107, 287, 1103, 1209, 2859
AspS9I	GGNCC	7 cut(s)	459, 1380, 1430, 1871, 1964, 2056, 2432
AsuC2I	CCSGG	7 cut(s)	118, 130, 160, 457, 463, 464, 888
AsuNHI	GCTAGC	1 cut(s)	1892
AvaI	CYCGRG	3 cut(s)	353, 462, 2184
AvaII	GGWCC	6 cut(s)	459, 1380, 1871, 1964, 2056, 2432
BaeGI	GKGCMC	1 cut(s)	2246
BalI	TGGCCA	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	2635
BanI	GGYRCC	2 cut(s)	284, 1206
BanII	GRGCYC	1 cut(s)	281
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
BauI	CACGAG	1 cut(s)	2576
Bbv12I	GWGCWC	1 cut(s)	281
BbvCI	CCTCAGC	3 cut(s)	512, 1875, 2640
BbvI	GCAGC	7 cut(s)	79, 105, 544, 1089, 2146, 2564, 3010
BceAI	ACGGC	3 cut(s)	109, 118, 514
BcgI	CGANNNNNNTGC	4 cut(s)	2141, 2175, 2634, 2668
BciT130I	CCWGG	1 cut(s)	1434
BclI	TGATCA	3 cut(s)	769, 829, 1510
BcnI	CCSGG	7 cut(s)	118, 130, 160, 457, 463, 464, 888
BcoDI	GTCTC	5 cut(s)	149, 608, 844, 1667, 2707
BcuI	ACTAGT	1 cut(s)	2698
BfmI	CTRYAG	2 cut(s)	91, 2192
BfoI	RGCGCY	2 cut(s)	288, 1210
BglII	AGATCT	1 cut(s)	1933
Bme1390I	CCNGG	8 cut(s)	118, 130, 160, 457, 463, 464, 888, 1434
Bme18I	GGWCC	6 cut(s)	459, 1380, 1871, 1964, 2056, 2432
BmeRI	GACNNNNNGTC	1 cut(s)	332
BmeT110I	CYCGRG	3 cut(s)	353, 462, 2184
BmgT120I	GGNCC	7 cut(s)	459, 1380, 1430, 1871, 1964, 2056, 2432
BmrFI	CCNGG	8 cut(s)	118, 130, 160, 457, 463, 464, 888, 1434
BmrI	ACTGGG	1 cut(s)	2841
BmsI	GCATC	3 cut(s)	1318, 2003, 2539
BmtI	GCTAGC	1 cut(s)	1896
BmuI	ACTGGG	1 cut(s)	2841
BoxI	GACNNNNGTC	1 cut(s)	2699
BplI	GAGNNNNNCTC	2 cut(s)	2623, 2655
BpmI	CTGGAG	1 cut(s)	2724
Bpu10I	CCTNAGC	4 cut(s)	512, 1477, 1875, 2640
BpuEI	CTTGAG	5 cut(s)	65, 1405, 1914, 1953, 2237
BpuMI	CCSGG	7 cut(s)	118, 130, 160, 457, 463, 464, 888
Bsa29I	ATCGAT	1 cut(s)	2341
BsaHI	GRCGYC	3 cut(s)	285, 321, 1207
BsaI	GGTCTC	1 cut(s)	149
BsaWI	WCCGGW	4 cut(s)	177, 201, 862, 875
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 775, 805
Bse118I	RCCGGY	3 cut(s)	862, 1055, 1313
Bse1I	ACTGG	4 cut(s)	975, 2435, 2648, 2836
Bse3DI	GCAATG	6 cut(s)	231, 412, 852, 1254, 2550, 3021
BseBI	CCWGG	1 cut(s)	1434
BseCI	ATCGAT	1 cut(s)	2341
BseMI	GCAATG	6 cut(s)	231, 412, 852, 1254, 2550, 3021
BseMII	CTCAG	9 cut(s)	503, 1158, 1314, 1589, 1889, 1951, 2654, 2874, 3003
BseNI	ACTGG	4 cut(s)	975, 2435, 2648, 2836
BseRI	GAGGAG	2 cut(s)	2066, 2852
BseSI	GKGCMC	1 cut(s)	2246
BseX3I	CGGCCG	1 cut(s)	119
BseXI	GCAGC	7 cut(s)	79, 105, 544, 1089, 2146, 2564, 3010
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	2 cut(s)	303, 1103
Bsh1285I	CGRYCG	4 cut(s)	122, 178, 206, 1702
BshFI	GGCC	6 cut(s)	121, 545, 1243, 1431, 2099, 2980
BshNI	GGYRCC	2 cut(s)	284, 1206
BshTI	ACCGGT	1 cut(s)	862
BshVI	ATCGAT	1 cut(s)	2341
BsiEI	CGRYCG	4 cut(s)	122, 178, 206, 1702
BsiHKAI	GWGCWC	1 cut(s)	281
BsiHKCI	CYCGRG	3 cut(s)	353, 462, 2184
BsiWI	CGTACG	1 cut(s)	2713
BsmAI	GTCTC	5 cut(s)	149, 608, 844, 1667, 2707
BsmI	GAATGC	2 cut(s)	107, 2408
BsnI	GGCC	6 cut(s)	121, 545, 1243, 1431, 2099, 2980
Bso31I	GGTCTC	1 cut(s)	149
BsoBI	CYCGRG	3 cut(s)	353, 462, 2184
Bsp1286I	GDGCHC	2 cut(s)	281, 2246
Bsp19I	CCATGG	3 cut(s)	2104, 2263, 2729
BspANI	GGCC	6 cut(s)	121, 545, 1243, 1431, 2099, 2980
BspCNI	CTCAG	9 cut(s)	504, 1159, 1315, 1588, 1888, 1950, 2653, 2873, 3002
BspDI	ATCGAT	1 cut(s)	2341
BspFNI	CGCG	2 cut(s)	303, 1103
BspMAI	CTGCAG	1 cut(s)	95
BspOI	GCTAGC	1 cut(s)	1896
BspPI	GGATC	8 cut(s)	170, 280, 436, 2287, 2630, 2643, 2918, 2960
BspQI	GCTCTTC	1 cut(s)	2576
BspT107I	GGYRCC	2 cut(s)	284, 1206
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	6 cut(s)	231, 412, 852, 1254, 2550, 3021
BsrFI	RCCGGY	3 cut(s)	862, 1055, 1313
BsrI	ACTGG	4 cut(s)	975, 2435, 2648, 2836
BssAI	RCCGGY	3 cut(s)	862, 1055, 1313
BssNI	GRCGYC	3 cut(s)	285, 321, 1207
BssSI	CACGAG	1 cut(s)	2576
BssT1I	CCWWGG	6 cut(s)	965, 1231, 1464, 2104, 2263, 2729
Bst2BI	CACGAG	1 cut(s)	2576
Bst2UI	CCWGG	1 cut(s)	1434
Bst6I	CTCTTC	4 cut(s)	1888, 2074, 2522, 2576
BstACI	GRCGYC	3 cut(s)	285, 321, 1207
BstAPI	GCANNNNNTGC	3 cut(s)	538, 2549, 3020
BstC8I	GCNNGC	7 cut(s)	543, 1057, 1304, 1646, 1894, 2349, 3012
BstDSI	CCRYGG	3 cut(s)	2104, 2263, 2729
BstFNI	CGCG	2 cut(s)	303, 1103
BstH2I	RGCGCY	2 cut(s)	288, 1210
BstHHI	GCGC	5 cut(s)	107, 287, 1103, 1209, 2859
BstMAI	GTCTC	5 cut(s)	149, 608, 844, 1667, 2707
BstMCI	CGRYCG	4 cut(s)	122, 178, 206, 1702
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 102, 147, 538, 547, 2549, 2718, 3020
BstNI	CCWGG	1 cut(s)	1434
BstNSI	RCATGY	4 cut(s)	1680, 1795, 1821, 2048
BstPAI	GACNNNNGTC	1 cut(s)	2699
BstSCI	CCNGG	8 cut(s)	116, 128, 158, 455, 461, 462, 886, 1432
BstSFI	CTRYAG	2 cut(s)	91, 2192
BstSLI	GKGCMC	1 cut(s)	2246
BstUI	CGCG	2 cut(s)	303, 1103
BstV1I	GCAGC	7 cut(s)	79, 105, 544, 1089, 2146, 2564, 3010
BstX2I	RGATCY	3 cut(s)	1933, 2279, 2635
BstXI	CCANNNNNNTGG	3 cut(s)	1097, 1864, 2155
BstYI	RGATCY	3 cut(s)	1933, 2279, 2635
BstZI	CGGCCG	1 cut(s)	119
Bsu15I	ATCGAT	1 cut(s)	2341
BsuRI	GGCC	6 cut(s)	121, 545, 1243, 1431, 2099, 2980
BsuTUI	ATCGAT	1 cut(s)	2341
BtgI	CCRYGG	3 cut(s)	2104, 2263, 2729
BtgZI	GCGATG	1 cut(s)	516
BtsI	GCAGTG	1 cut(s)	2044
BtsIMutI	CAGTG	5 cut(s)	456, 726, 1850, 2044, 2442
Cac8I	GCNNGC	7 cut(s)	543, 1057, 1304, 1646, 1894, 2349, 3012
CaiI	CAGNNNCTG	1 cut(s)	381
CfoI	GCGC	5 cut(s)	107, 287, 1103, 1209, 2859
Cfr10I	RCCGGY	3 cut(s)	862, 1055, 1313
Cfr13I	GGNCC	7 cut(s)	459, 1380, 1430, 1871, 1964, 2056, 2432
Cfr9I	CCCGGG	1 cut(s)	462
ClaI	ATCGAT	1 cut(s)	2341
CseI	GACGC	2 cut(s)	292, 336
Csp6I	GTAC	4 cut(s)	253, 1612, 2714, 2726
CspAI	ACCGGT	1 cut(s)	862
CviQI	GTAC	4 cut(s)	253, 1612, 2714, 2726
DinI	GGCGCC	2 cut(s)	286, 1208
DrdI	GACNNNNNNGTC	2 cut(s)	182, 320
DriI	GACNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	2 cut(s)	182, 320
EaeI	YGGCCR	2 cut(s)	119, 543
EagI	CGGCCG	1 cut(s)	119
Eam1104I	CTCTTC	4 cut(s)	1888, 2074, 2522, 2576
Eam1105I	GACNNNNNGTC	1 cut(s)	332
EarI	CTCTTC	4 cut(s)	1888, 2074, 2522, 2576
EciI	GGCGGA	1 cut(s)	361
Ecl136II	GAGCTC	1 cut(s)	279
EclXI	CGGCCG	1 cut(s)	119
Eco130I	CCWWGG	6 cut(s)	965, 1231, 1464, 2104, 2263, 2729
Eco24I	GRGCYC	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	6 cut(s)	459, 1380, 1871, 1964, 2056, 2432
Eco52I	CGGCCG	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	1746
Eco88I	CYCGRG	3 cut(s)	353, 462, 2184
EcoICRI	GAGCTC	1 cut(s)	279
EcoO109I	RGGNCCY	3 cut(s)	1380, 1871, 1964
EcoRI	GAATTC	3 cut(s)	694, 1357, 2014
EcoRII	CCWGG	1 cut(s)	1432
EcoT14I	CCWWGG	6 cut(s)	965, 1231, 1464, 2104, 2263, 2729
EcoT22I	ATGCAT	1 cut(s)	1333
EcoT38I	GRGCYC	1 cut(s)	281
EgeI	GGCGCC	2 cut(s)	286, 1208
EheI	GGCGCC	2 cut(s)	286, 1208
ErhI	CCWWGG	6 cut(s)	965, 1231, 1464, 2104, 2263, 2729
FauNDI	CATATG	3 cut(s)	1248, 1449, 2248
FbaI	TGATCA	3 cut(s)	769, 829, 1510
FblI	GTMKAC	2 cut(s)	174, 306
FriOI	GRGCYC	1 cut(s)	281
GlaI	GCGC	5 cut(s)	106, 286, 1102, 1208, 2858
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	2724
HaeII	RGCGCY	2 cut(s)	288, 1210
HaeIII	GGCC	6 cut(s)	121, 545, 1243, 1431, 2099, 2980
HgaI	GACGC	2 cut(s)	292, 336
HhaI	GCGC	5 cut(s)	107, 287, 1103, 1209, 2859
Hin1I	GRCGYC	3 cut(s)	285, 321, 1207
Hin6I	GCGC	5 cut(s)	105, 285, 1101, 1207, 2857
HinP1I	GCGC	5 cut(s)	105, 285, 1101, 1207, 2857
HincII	GTYRAC	4 cut(s)	175, 307, 2384, 2829
HindII	GTYRAC	4 cut(s)	175, 307, 2384, 2829
HindIII	AAGCTT	1 cut(s)	2083
Hpy166II	GTNNAC	9 cut(s)	175, 307, 946, 1497, 1696, 2260, 2384, 2593, 2829
Hpy8I	GTNNAC	9 cut(s)	175, 307, 946, 1497, 1696, 2260, 2384, 2593, 2829
Hpy99I	CGWCG	8 cut(s)	36, 176, 188, 308, 317, 320, 323, 330
HpyCH4IV	ACGT	4 cut(s)	183, 321, 705, 2400
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 102, 147, 538, 547, 2549, 2718, 3020
HpySE526I	ACGT	4 cut(s)	183, 321, 705, 2400
Hsp92I	GRCGYC	3 cut(s)	285, 321, 1207
HspAI	GCGC	5 cut(s)	105, 285, 1101, 1207, 2857
KasI	GGCGCC	2 cut(s)	284, 1206
KroI	GCCGGC	1 cut(s)	1055
KroNI	GCCGGC	1 cut(s)	1057
Ksp22I	TGATCA	3 cut(s)	769, 829, 1510
LguI	GCTCTTC	1 cut(s)	2576
LmnI	GCTCC	8 cut(s)	141, 204, 264, 284, 971, 2483, 2743, 2839
Lsp1109I	GCAGC	7 cut(s)	79, 105, 544, 1089, 2146, 2564, 3010
LweI	GCATC	3 cut(s)	1318, 2003, 2539
MaeII	ACGT	4 cut(s)	183, 321, 705, 2400
MfeI	CAATTG	1 cut(s)	536
MflI	RGATCY	3 cut(s)	1933, 2279, 2635
MhlI	GDGCHC	2 cut(s)	281, 2246
MlsI	TGGCCA	1 cut(s)	545
MluNI	TGGCCA	1 cut(s)	545
Mly113I	GGCGCC	2 cut(s)	285, 1207
MlyI	GAGTC	4 cut(s)	302, 372, 432, 2060
MmeI	TCCRAC	7 cut(s)	336, 349, 406, 1420, 2083, 2172, 2951
Mox20I	TGGCCA	1 cut(s)	545
Mph1103I	ATGCAT	1 cut(s)	1333
MroNI	GCCGGC	1 cut(s)	1055
MroXI	GAANNNNTTC	3 cut(s)	1226, 1620, 2571
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	6 cut(s)	489, 909, 1419, 2081, 2118, 2483
MslI	CAYNNNNRTG	3 cut(s)	501, 1014, 1452
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	3 cut(s)	1030, 1123, 1166
MspR9I	CCNGG	8 cut(s)	118, 130, 160, 457, 463, 464, 888, 1434
MunI	CAATTG	1 cut(s)	536
Mva1269I	GAATGC	2 cut(s)	107, 2408
MvaI	CCWGG	1 cut(s)	1434
MvnI	CGCG	2 cut(s)	303, 1103
MwoI	GCNNNNNNNGC	8 cut(s)	76, 102, 147, 538, 547, 2549, 2718, 3020
NaeI	GCCGGC	1 cut(s)	1057
NarI	GGCGCC	2 cut(s)	285, 1207
NciI	CCSGG	7 cut(s)	118, 130, 160, 457, 463, 464, 888
NcoI	CCATGG	3 cut(s)	2104, 2263, 2729
NdeI	CATATG	3 cut(s)	1248, 1449, 2248
NgoMIV	GCCGGC	1 cut(s)	1055
NheI	GCTAGC	1 cut(s)	1892
NmeAIII	GCCGAG	1 cut(s)	821
NmuCI	GTSAC	7 cut(s)	451, 1630, 1903, 2422, 2437, 2455, 2776
NsiI	ATGCAT	1 cut(s)	1333
NspI	RCATGY	4 cut(s)	1680, 1795, 1821, 2048
PaeR7I	CTCGAG	2 cut(s)	353, 2184
PciI	ACATGT	1 cut(s)	1817
PciSI	GCTCTTC	1 cut(s)	2576
PcsI	WCGNNNNNNNCGW	5 cut(s)	180, 303, 312, 342, 351
PctI	GAATGC	2 cut(s)	107, 2408
PdiI	GCCGGC	1 cut(s)	1057
PdmI	GAANNNNTTC	3 cut(s)	1226, 1620, 2571
PfeI	GAWTC	7 cut(s)	506, 1022, 1042, 1459, 1799, 1979, 2972
Pfl23II	CGTACG	1 cut(s)	2713
PflFI	GACNNNGTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	381
PfoI	TCCNGGA	1 cut(s)	128
PinAI	ACCGGT	1 cut(s)	862
PleI	GAGTC	4 cut(s)	302, 372, 431, 2060
PluTI	GGCGCC	2 cut(s)	288, 1210
PpsI	GAGTC	4 cut(s)	302, 372, 431, 2060
PpuMI	RGGWCCY	3 cut(s)	1380, 1871, 1964
PscI	ACATGT	1 cut(s)	1817
PshAI	GACNNNNGTC	1 cut(s)	2699
PsiI	TTATAA	1 cut(s)	2225
Psp124BI	GAGCTC	1 cut(s)	281
Psp1406I	AACGTT	1 cut(s)	2400
Psp5II	RGGWCCY	3 cut(s)	1380, 1871, 1964
Psp6I	CCWGG	1 cut(s)	1432
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	1432
PspLI	CGTACG	1 cut(s)	2713
PspPI	GGNCC	7 cut(s)	459, 1380, 1430, 1871, 1964, 2056, 2432
PspPPI	RGGWCCY	3 cut(s)	1380, 1871, 1964
PstI	CTGCAG	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	381
PsuI	RGATCY	3 cut(s)	1933, 2279, 2635
PsyI	GACNNNGTC	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	1166
RsaI	GTAC	4 cut(s)	254, 1613, 2715, 2727
RsaNI	GTAC	4 cut(s)	253, 1612, 2714, 2726
RseI	CAYNNNNRTG	3 cut(s)	501, 1014, 1452
SacI	GAGCTC	1 cut(s)	281
SalI	GTCGAC	2 cut(s)	173, 305
SapI	GCTCTTC	1 cut(s)	2576
SaqAI	TTAA	6 cut(s)	489, 909, 1419, 2081, 2118, 2483
Sau96I	GGNCC	7 cut(s)	459, 1380, 1430, 1871, 1964, 2056, 2432
SchI	GAGTC	4 cut(s)	302, 372, 432, 2060
ScrFI	CCNGG	8 cut(s)	118, 130, 160, 457, 463, 464, 888, 1434
SduI	GDGCHC	2 cut(s)	281, 2246
SfaNI	GCATC	3 cut(s)	1318, 2003, 2539
SfcI	CTRYAG	2 cut(s)	91, 2192
SfoI	GGCGCC	2 cut(s)	286, 1208
Sfr274I	CTCGAG	2 cut(s)	353, 2184
SinI	GGWCC	6 cut(s)	459, 1380, 1871, 1964, 2056, 2432
SlaI	CTCGAG	2 cut(s)	353, 2184
SmaI	CCCGGG	1 cut(s)	464
SmiMI	CAYNNNNRTG	3 cut(s)	501, 1014, 1452
SmlI	CTYRAG	7 cut(s)	80, 353, 1384, 1929, 1968, 2184, 2216
SmoI	CTYRAG	7 cut(s)	80, 353, 1384, 1929, 1968, 2184, 2216
SpeI	ACTAGT	1 cut(s)	2698
SspDI	GGCGCC	2 cut(s)	284, 1206
SspI	AATATT	2 cut(s)	1472, 1831
SstI	GAGCTC	1 cut(s)	281
StyD4I	CCNGG	8 cut(s)	116, 128, 158, 455, 461, 462, 886, 1432
StyI	CCWWGG	6 cut(s)	965, 1231, 1464, 2104, 2263, 2729
TaiI	ACGT	4 cut(s)	186, 324, 708, 2403
TauI	GCSGC	4 cut(s)	124, 153, 290, 485
TfiI	GAWTC	7 cut(s)	506, 1022, 1042, 1459, 1799, 1979, 2972
Tru1I	TTAA	6 cut(s)	489, 909, 1419, 2081, 2118, 2483
Tru9I	TTAA	6 cut(s)	489, 909, 1419, 2081, 2118, 2483
TscAI	CASTG	5 cut(s)	456, 726, 1857, 2044, 2442
TseFI	GTSAC	7 cut(s)	451, 1630, 1903, 2422, 2437, 2455, 2776
TseI	GCWGC	7 cut(s)	67, 93, 532, 1077, 2159, 2552, 3023
Tsp45I	GTSAC	7 cut(s)	451, 1630, 1903, 2422, 2437, 2455, 2776
TspGWI	ACGGA	4 cut(s)	160, 435, 945, 2888
TspMI	CCCGGG	1 cut(s)	462
TspRI	CASTG	5 cut(s)	456, 726, 1857, 2044, 2442
Tth111I	GACNNNGTC	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	381
VpaK11BI	GGWCC	6 cut(s)	459, 1380, 1871, 1964, 2056, 2432
XapI	RAATTY	5 cut(s)	694, 757, 1357, 2014, 2443
XceI	RCATGY	4 cut(s)	1680, 1795, 1821, 2048
XhoI	CTCGAG	2 cut(s)	353, 2184
XmaI	CCCGGG	1 cut(s)	462
XmiI	GTMKAC	2 cut(s)	174, 306
XmnI	GAANNNNTTC	3 cut(s)	1226, 1620, 2571
ZraI	GACGTC	1 cut(s)	322
Zsp2I	ATGCAT	1 cut(s)	1333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.