Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009224

Physical Location & Seq

Genomic Coordinates Forward (+)

6609312 .. 6612814

Gene Structure 3503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG084800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGGGTGCAAGAGTGGAGAGATTGAGCTCGGCTTCTCCAATGTGTCTCAAATGAATGTAAAGAAGGAACTGATCATGAGAAGCTGGATGTTGCCAGAAGCTTTCTGTAGATCACAATTATCTCCACGTACAGTAGAAGTAGTTAGTACTAGAGCAAATACTGAGCAGCAAAACCAACTTTCATCATCTTCCTCATCTTTGAGATCGCACTCAACCATGGATAGCCCCGAATATTCATCCCTCCTCTTCAACACTCTCCAAACATCTACTGCACCTACTTCTCTCAATATCCCAGCTGATCAAGTCTATAATACTACAAACTTTACTTCATCATTGCAACCAATTGTATCACCAAATACAAACATATTTAGCAGTACTAGTAGTAGTACTAATCCTCATCAACAGGCCATGCAAGCATTTTCTCGAATTCGAGGGAACATCCAATTACCAGCTCCTGAGATCGAAGATGCTGAAATTACAAGAGCAATCCTTGCCGTCCTGACTACTCCTTCACCTTCTTCATCTCCTTCTATATCTTCACACCAATCAGTACCTCCAGCATTGAAGGATGATCCGGCCCCTAGTCCAAGTCATCTAAAGCCGAAACCCAGCAGTGCTTTCAAGAATTATAATTATATCTCATCGCCTTTGGCCCCAAGAACACAAACGAAAGGCGCTGCTAATCTAGCAGTACGTAAGCAAACTATGGTGAAGAGATCGATTTCCTTCTTGAGAAGCTTAAATTTACTGAGAATTCGCGATCAGGGTATGCAAGCTGCCACCCGCCCCACAACAAGTCAGTTGCATCATATGATATCTGAGCGCAAAAGGCGTGAGAAACTCAACGAAAGCTTTCATTCTTTGAAATCTCTACTTCCTCCTGGAACCAAGAAAGACAAAGCATCAGTGCTTACAACTGCAAGGGACTACTTAACTAGTTTAAAAGCTCAAGTTGATGAGCTTAGCAAACGAAACCAGCAGTTAGAGGCAGCTGCAAGGCTTATAGTAAAAGAAGATCAAGAAGAAGAAGCAGCTGGCTCCTCATCAATAGAAAGAGTTACTGTGACGCTTACGCATGTATCTGGCTCGAGCACAGATCAAGATCAGCAAATTATTGCCTTGCAAGTGATTGTGAGATCAGGAGAATGTTCGACCGAAGATATGGTAATTAGAATCTTGGAATTCTTGAAGCAAGTTAAGAACTTGAGGTTGATGTCCATGGAAGCAAGTACTTGGAAAACAGAATTACATCCCAACATCAACCGCGTGGTCTTGAGATTAAGAGTTGATGATCAGGCGAACGAATGGGACGAGTCTGCCTTCCAGGAAGCAGTGAGAAGGGTGGTTGCTGACTTGGCACAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

455

Amino Acids

50.47

Weight (kDa)

9.34

Isoelectric Point (pI)

63.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7050	PF23133	1 - 35	6.6e-06	Domain of unknown function (DUF7050)
HLH	PF00010	269 - 314	1.4e-11	Helix-loop-helix DNA-binding domain
DUF7049	PF23132	351 - 452	8.7e-32	Domain of unknown function (DUF7049)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56960 AT5G56960
fragaria_vesca	FvH4_1g07710 FvH4_1g07710 FvH4_1g07710
malus_domestica	MD02G1081600.v1.1 MD15G1208900.v1.1
prunus_persica	Prupe.7G207500_v2.0.a1
pyrus_communis	pycom02g06440 pycom15g18520
rosa_chinensis	RchiOBHm_Chr2g0093571
rosa_laevigata	RLG00000016419
rosa_multiflora	Rmu_sc0006964.1_g000006 Rmu_sc0024845.1_g000001 Rmu_sc0024846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147970
rosa_rugosa	Rorug02G0037700
rosa_samantha	Rh2AG084200 Rh2BG084800 Rh2CG087100 Rh2DG082800
rosa_wichuraiana	Rw2G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AccII	CGCG	2 cut(s)	759, 1266
AciI	CCGC	2 cut(s)	784, 1264
AclWI	GGATC	1 cut(s)	566
AcsI	RAATTY	4 cut(s)	426, 742, 753, 1181
AfaI	GTAC	7 cut(s)	130, 148, 376, 388, 552, 693, 1231
AgsI	TTSAA	5 cut(s)	250, 565, 622, 865, 1189
AhlI	ACTAGT	2 cut(s)	377, 935
AjnI	CCWGG	2 cut(s)	880, 1323
Alw21I	GWGCWC	2 cut(s)	30, 1094
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	1087
AoxI	GGCC	3 cut(s)	405, 576, 651
ApeKI	GCWGC	6 cut(s)	166, 677, 776, 989, 992, 1031
ApoI	RAATTY	4 cut(s)	426, 742, 753, 1181
Asp700I	GAANNNNTTC	1 cut(s)	852
AspLEI	GCGC	2 cut(s)	677, 825
AspS9I	GGNCC	2 cut(s)	577, 652
AsuHPI	GGTGA	3 cut(s)	342, 504, 721
AvaI	CYCGRG	1 cut(s)	1087
BaeI	ACNNNNGTAYC	2 cut(s)	1062, 1095
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	30, 1094
BbvI	GCAGC	6 cut(s)	178, 664, 763, 979, 1001, 1043
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	2 cut(s)	882, 1325
BclI	TGATCA	3 cut(s)	72, 298, 1291
BcoDI	GTCTC	1 cut(s)	51
BcuI	ACTAGT	2 cut(s)	377, 935
BfaI	CTAG	5 cut(s)	150, 378, 582, 686, 936
BfmI	CTRYAG	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	678
BisI	GCNGC	6 cut(s)	167, 678, 777, 990, 993, 1032
BlpI	GCTNAGC	1 cut(s)	962
BlsI	GCNGC	6 cut(s)	168, 679, 778, 991, 994, 1033
BmcAI	AGTACT	4 cut(s)	148, 376, 388, 1231
Bme1390I	CCNGG	2 cut(s)	882, 1325
BmeT110I	CYCGRG	1 cut(s)	1087
BmgT120I	GGNCC	2 cut(s)	577, 652
BmiI	GGNNCC	4 cut(s)	579, 654, 886, 1039
BmrFI	CCNGG	2 cut(s)	882, 1325
BmsI	GCATC	3 cut(s)	457, 814, 911
BpmI	CTGGAG	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	962
BpuEI	CTTGAG	4 cut(s)	751, 933, 1225, 1294
Bsa29I	ATCGAT	1 cut(s)	719
BsaAI	YACGTR	2 cut(s)	128, 695
BsaBI	GATNNNNATC	1 cut(s)	1101
BsaJI	CCNNGG	2 cut(s)	216, 1218
Bse3DI	GCAATG	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	1101
BseBI	CCWGG	2 cut(s)	882, 1325
BseCI	ATCGAT	1 cut(s)	719
BseDI	CCNNGG	2 cut(s)	216, 1218
BseGI	GGATG	5 cut(s)	93, 236, 438, 574, 1249
BseJI	GATNNNNATC	1 cut(s)	1101
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	4 cut(s)	153, 447, 740, 810
BseRI	GAGGAG	2 cut(s)	233, 1030
BseXI	GCAGC	6 cut(s)	178, 664, 763, 979, 1001, 1043
BseYI	CCCAGC	2 cut(s)	292, 608
BsgI	GTGCAG	1 cut(s)	255
Bsh1236I	CGCG	2 cut(s)	759, 1266
Bsh1285I	CGRYCG	1 cut(s)	1155
BshFI	GGCC	3 cut(s)	407, 578, 653
BshVI	ATCGAT	1 cut(s)	719
BsiEI	CGRYCG	1 cut(s)	1155
BsiHKAI	GWGCWC	2 cut(s)	30, 1094
BsiHKCI	CYCGRG	1 cut(s)	1087
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	2 cut(s)	938, 1322
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	938, 1322
BsnI	GGCC	3 cut(s)	407, 578, 653
BsoBI	CYCGRG	1 cut(s)	1087
Bsp1286I	GDGCHC	2 cut(s)	30, 1094
Bsp1720I	GCTNAGC	1 cut(s)	962
Bsp19I	CCATGG	2 cut(s)	216, 1218
Bsp68I	TCGCGA	1 cut(s)	759
BspACI	CCGC	2 cut(s)	784, 1264
BspANI	GGCC	3 cut(s)	407, 578, 653
BspCNI	CTCAG	4 cut(s)	154, 448, 741, 811
BspDI	ATCGAT	1 cut(s)	719
BspFNI	CGCG	2 cut(s)	759, 1266
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	4 cut(s)	579, 654, 886, 1039
BspPI	GGATC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	216, 1218
BssT1I	CCWWGG	2 cut(s)	216, 1218
Bst2UI	CCWGG	2 cut(s)	882, 1325
Bst4CI	ACNGT	2 cut(s)	133, 1063
Bst6I	CTCTTC	2 cut(s)	251, 707
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstBAI	YACGTR	2 cut(s)	128, 695
BstC8I	GCNNGC	3 cut(s)	414, 774, 1036
BstDEI	CTNAG	5 cut(s)	162, 456, 749, 819, 962
BstDSI	CCRYGG	2 cut(s)	216, 1218
BstF5I	GGATG	5 cut(s)	93, 236, 438, 574, 1249
BstFNI	CGCG	2 cut(s)	759, 1266
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	2 cut(s)	677, 825
BstMAI	GTCTC	1 cut(s)	51
BstMCI	CGRYCG	1 cut(s)	1155
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 491, 686, 829, 1355
BstNI	CCWGG	2 cut(s)	882, 1325
BstNSI	RCATGY	1 cut(s)	1079
BstSCI	CCNGG	2 cut(s)	880, 1323
BstSFI	CTRYAG	1 cut(s)	106
BstSNI	TACGTA	1 cut(s)	695
BstUI	CGCG	2 cut(s)	759, 1266
BstV1I	GCAGC	6 cut(s)	178, 664, 763, 979, 1001, 1043
Bsu15I	ATCGAT	1 cut(s)	719
BsuRI	GGCC	3 cut(s)	407, 578, 653
BsuTUI	ATCGAT	1 cut(s)	719
BtgI	CCRYGG	2 cut(s)	216, 1218
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	5 cut(s)	93, 236, 438, 574, 1249
BtsI	GCAGTG	2 cut(s)	619, 1338
BtsIMutI	CAGTG	3 cut(s)	619, 912, 1338
BtuMI	TCGCGA	1 cut(s)	759
Cac8I	GCNNGC	3 cut(s)	414, 774, 1036
CaiI	CAGNNNCTG	1 cut(s)	455
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	2 cut(s)	677, 825
Cfr13I	GGNCC	2 cut(s)	577, 652
ClaI	ATCGAT	1 cut(s)	719
CseI	GACGC	1 cut(s)	1075
Csp6I	GTAC	7 cut(s)	129, 147, 375, 387, 551, 692, 1230
CviAII	CATG	5 cut(s)	76, 217, 409, 1076, 1219
CviQI	GTAC	7 cut(s)	129, 147, 375, 387, 551, 692, 1230
DdeI	CTNAG	5 cut(s)	162, 456, 749, 819, 962
DraI	TTTAAA	1 cut(s)	942
Eam1104I	CTCTTC	2 cut(s)	251, 707
EarI	CTCTTC	2 cut(s)	251, 707
Ecl136II	GAGCTC	1 cut(s)	28
Eco105I	TACGTA	1 cut(s)	695
Eco130I	CCWWGG	2 cut(s)	216, 1218
Eco24I	GRGCYC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	816
Eco53kI	GAGCTC	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	1087
EcoICRI	GAGCTC	1 cut(s)	28
EcoRI	GAATTC	3 cut(s)	426, 753, 1181
EcoRII	CCWGG	2 cut(s)	880, 1323
EcoRV	GATATC	1 cut(s)	816
EcoT14I	CCWWGG	2 cut(s)	216, 1218
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	2 cut(s)	216, 1218
FaeI	CATG	5 cut(s)	79, 220, 412, 1079, 1222
FaqI	GGGAC	2 cut(s)	938, 1322
FatI	CATG	5 cut(s)	75, 216, 408, 1075, 1218
FauI	CCCGC	1 cut(s)	791
FauNDI	CATATG	1 cut(s)	810
FbaI	TGATCA	3 cut(s)	72, 298, 1291
Fnu4HI	GCNGC	6 cut(s)	167, 678, 777, 990, 993, 1032
FokI	GGATG	5 cut(s)	100, 223, 425, 581, 1236
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	6 cut(s)	167, 678, 777, 990, 993, 1032
FspBI	CTAG	5 cut(s)	150, 378, 582, 686, 936
GlaI	GCGC	2 cut(s)	676, 824
GluI	GCNGC	6 cut(s)	167, 678, 777, 990, 993, 1032
GsaI	CCCAGC	2 cut(s)	296, 612
GsuI	CTGGAG	1 cut(s)	540
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	3 cut(s)	407, 578, 653
HapII	CCGG	1 cut(s)	575
HgaI	GACGC	1 cut(s)	1075
HhaI	GCGC	2 cut(s)	677, 825
Hin1II	CATG	5 cut(s)	79, 220, 412, 1079, 1222
Hin6I	GCGC	2 cut(s)	675, 823
HinP1I	GCGC	2 cut(s)	675, 823
HindIII	AAGCTT	3 cut(s)	99, 736, 850
HinfI	GANTC	2 cut(s)	1173, 1313
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	3 cut(s)	342, 504, 721
Hpy188I	TCNGA	1 cut(s)	820
HpyAV	CCTTC	8 cut(s)	58, 519, 525, 537, 559, 736, 1330, 1332
HpyCH4III	ACNGT	2 cut(s)	133, 1063
HpyCH4IV	ACGT	2 cut(s)	127, 694
HpyCH4V	TGCA	9 cut(s)	9, 272, 337, 412, 772, 805, 920, 995, 1123
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 491, 686, 829, 1355
HpyF3I	CTNAG	5 cut(s)	162, 456, 749, 819, 962
HpySE526I	ACGT	2 cut(s)	127, 694
Hsp92II	CATG	5 cut(s)	79, 220, 412, 1079, 1222
HspAI	GCGC	2 cut(s)	675, 823
Ksp22I	TGATCA	3 cut(s)	72, 298, 1291
LmnI	GCTCC	2 cut(s)	457, 1043
Lsp1109I	GCAGC	6 cut(s)	178, 664, 763, 979, 1001, 1043
LweI	GCATC	3 cut(s)	457, 814, 911
MaeI	CTAG	5 cut(s)	150, 378, 582, 686, 936
MaeII	ACGT	2 cut(s)	127, 694
MaeIII	GTNAC	2 cut(s)	1057, 1063
MfeI	CAATTG	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	30, 1094
MlyI	GAGTC	1 cut(s)	1322
MroXI	GAANNNNTTC	1 cut(s)	852
MseI	TTAA	5 cut(s)	740, 932, 941, 1197, 1280
MspA1I	CMGCKG	3 cut(s)	296, 992, 1034
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	882, 1325
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	2 cut(s)	882, 1325
MvnI	CGCG	2 cut(s)	759, 1266
MwoI	GCNNNNNNNGC	5 cut(s)	413, 491, 686, 829, 1355
NcoI	CCATGG	2 cut(s)	216, 1218
NdeI	CATATG	1 cut(s)	810
NlaIII	CATG	5 cut(s)	79, 220, 412, 1079, 1222
NlaIV	GGNNCC	4 cut(s)	579, 654, 886, 1039
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	1063
NruI	TCGCGA	1 cut(s)	759
NspI	RCATGY	1 cut(s)	1079
PaeR7I	CTCGAG	1 cut(s)	1087
PagI	TCATGA	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	1308
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	1 cut(s)	1173
PfoI	TCCNGGA	2 cut(s)	880, 1323
PkrI	GCNGC	6 cut(s)	168, 679, 778, 991, 994, 1033
PleI	GAGTC	1 cut(s)	1321
PpsI	GAGTC	1 cut(s)	1321
Ppu21I	YACGTR	2 cut(s)	128, 695
PsiI	TTATAA	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	880, 1323
PspFI	CCCAGC	2 cut(s)	292, 608
PspGI	CCWGG	2 cut(s)	880, 1323
PspN4I	GGNNCC	4 cut(s)	579, 654, 886, 1039
PspPI	GGNCC	2 cut(s)	577, 652
PspXI	VCTCGAGB	1 cut(s)	1087
PstNI	CAGNNNCTG	1 cut(s)	455
PvuII	CAGCTG	3 cut(s)	296, 992, 1034
RruI	TCGCGA	1 cut(s)	759
RsaI	GTAC	7 cut(s)	130, 148, 376, 388, 552, 693, 1231
RsaNI	GTAC	7 cut(s)	129, 147, 375, 387, 551, 692, 1230
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	5 cut(s)	740, 932, 941, 1197, 1280
SatI	GCNGC	6 cut(s)	167, 678, 777, 990, 993, 1032
Sau96I	GGNCC	2 cut(s)	577, 652
ScaI	AGTACT	4 cut(s)	148, 376, 388, 1231
SchI	GAGTC	1 cut(s)	1322
ScrFI	CCNGG	2 cut(s)	882, 1325
SduI	GDGCHC	2 cut(s)	30, 1094
SfaNI	GCATC	3 cut(s)	457, 814, 911
SfcI	CTRYAG	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	1087
SlaI	CTCGAG	1 cut(s)	1087
SmlI	CTYRAG	5 cut(s)	730, 948, 1087, 1204, 1273
SmoI	CTYRAG	5 cut(s)	730, 948, 1087, 1204, 1273
SnaBI	TACGTA	1 cut(s)	695
SpeI	ACTAGT	2 cut(s)	377, 935
SsiI	CCGC	2 cut(s)	784, 1264
SspI	AATATT	1 cut(s)	233
SspMI	CTAG	5 cut(s)	150, 378, 582, 686, 936
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	880, 1323
StyI	CCWWGG	2 cut(s)	216, 1218
TaaI	ACNGT	2 cut(s)	133, 1063
TaiI	ACGT	2 cut(s)	130, 697
TaqI	TCGA	6 cut(s)	424, 430, 462, 719, 1088, 1151
TaqII	GACCGA	1 cut(s)	1169
TatI	WGTACW	4 cut(s)	146, 374, 386, 1229
TfiI	GAWTC	1 cut(s)	1173
Tru1I	TTAA	5 cut(s)	740, 932, 941, 1197, 1280
Tru9I	TTAA	5 cut(s)	740, 932, 941, 1197, 1280
TscAI	CASTG	3 cut(s)	619, 912, 1338
TseFI	GTSAC	1 cut(s)	1063
TseI	GCWGC	6 cut(s)	166, 677, 776, 989, 992, 1031
Tsp45I	GTSAC	1 cut(s)	1063
TspDTI	ATGAA	6 cut(s)	68, 171, 225, 318, 510, 845
TspRI	CASTG	3 cut(s)	619, 912, 1338
XapI	RAATTY	4 cut(s)	426, 742, 753, 1181
XceI	RCATGY	1 cut(s)	1079
XhoI	CTCGAG	1 cut(s)	1087
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	5 cut(s)	150, 378, 582, 686, 936
ZrmI	AGTACT	4 cut(s)	148, 376, 388, 1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.