pycom15g18520

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
13168337 .. 13171440
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g18520.7

Sequence Viewer

Length: 1704 bp
ATGGACACTGCCTTCCACCTAGATGAAGGTTCTCGCGCCAATTTCCTTCGACTTGTCATGCAATCTTTTGGCTGCTTTTACATTTGCCTGTGGTCTTATATGCCACCTCCTTCTAACTGCTTATTCTTTCTCGATGGTGTCTATGATGAAGAAAATCAACCAAGCTCTTCTTCCGGCATTTTGGCTCGGCGGCTTTTCGATGAGTATCGGCTATCAGTTTTCAAAGTCCTCGAAAACGACAGATGTGTTCCAGGATTCGCTTTCAGGAATAGTTTTTCATTTGTGGAGTTGCAAGAAATGGACCTACAAAGACTGGCATCAGATGATAAACAGAGGCAATTTTATCGGGAAGCAAGGATTAAGACTGCAGTTTTCATGGGGTGCAAGAGTGGAGAAATTGAGCTGGGCTTGTCCAATGTGTCTCAAATAAATATAAAAAGAGAAATGATGAGAACCTGGTTGCCAGAAGTTTTTCCAGGACAATTATCTCCACATACAGAAGTTGCCAGCAGGTCAATCAACGGTCAGCAACAATATCCAGCTTCATCATCTTCATCTTCTTTGAGATCACTTTCCACAATGGATAGTCCTGAATATTCCTCCCTCCTCTTCAACATTCCCACCACCACCACTACTATTTCTCATAACATCCCAGAACTCTTTACACAATTATCTTCCAATCCCTTGCAACCAATCAATACTAGTTCATTGGAACCTTTACCAACCATAAATCTCGTTACTACTACTTCTTCTACTGGTGCTACTAGTCCTCATCAACAAGCCATTCAAGCAATTTCTCAAATCCGAAACATCCAATTCCCAACTCCGGAGATCGAAGATGCCACGATGACAAGAGCCATCCTTACAGTTCTATCTTCTTCTTCATATCAACCACCCCCACAAACTAATCCACCTTCTTCTTCTAGTACTGATCGTCATTTGCAAACTCCAAAGGCCAGTGCTTTCAAGAGTTACAACACCTCAGCTTTAGCCCCAAGAACGCAAATGGGTGCTAATTTACGCCTGCAAAACATGCACAAGCGATCCATTTCCTTCTTGAGAAGATTGAATCTAATGAGGCTTCGCGAAGGTATCCAAGCCACCCGCCCCACAAGCAGCCAGTTGCATCATATGATATCAGAGCGCAAAAGGCGTGAGAAGCTCAATGAAAGCTTTCATAAATTGAAATCACTACTTCCCCCGGGAACCAAGAAAGACAAAGCCTCAGTTCTTACAACTGCAAGGGAGTACTTGACTAATTTAAAAGCTCAAGTTGCTGAGCTTAGCAAAAGAAACCAGCAGTTAGAGGCAAGGCTCTTGCCACTTACCAGCTTAGGAGCTAATGAAGCAGCAGCAGCTGCAGGCTCCTCAAATGAAAGAGTTAGTCTTACGGTTACGAGTGTATCAACCGAATCATCCCCGGATCAATCTACTGATGAGCAAATTATTGACTTGCAAGTGATTCTAAGATCACAAGAGAGTTGCACCGAAGATATGGTGATCCGCATTTTGGAATTCTTGAAGCGGGTTGAGAATGTAAGCTTGATGTCCATGGAAGCCAATACTTGGATATCAGAATCAAATTCTAACATCAACCGCGTAATCTTGAGATTAAGAGTTCATCAGGGCACCGAATGGAACGAGGCTGCCTTCCAGGAAGCAGTGAGAAGGGTGGTTGCTGACTTAGTACGTAGGATCGACTAG

Protein Analysis

568

Amino Acids

63.75

Weight (kDa)

8.65

Isoelectric Point (pI)

67.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 501
AccB1I GGYRCC 1 cut(s) 1628
AccB7I CCANNNNNTGG 1 cut(s) 1566
AccII CGCG 3 cut(s) 36, 1086, 1599
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 5 cut(s) 190, 1105, 1504, 1525, 1597
AclWI GGATC 4 cut(s) 1038, 1431, 1495, 1703
AcsI RAATTY 2 cut(s) 1514, 1582
AfaI GTAC 3 cut(s) 928, 1250, 1689
AfiI CCNNNNNNNGG 3 cut(s) 826, 1510, 1566
AgsI TTSAA 7 cut(s) 223, 613, 788, 967, 1069, 1186, 1522
AhlI ACTAGT 2 cut(s) 701, 764
AjnI CCWGG 4 cut(s) 250, 455, 475, 1653
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 4 cut(s) 1038, 1431, 1495, 1703
AlwNI CAGNNNCTG 1 cut(s) 1358
Ama87I CYCGRG 1 cut(s) 1201
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 1 cut(s) 954
ApeKI GCWGC 7 cut(s) 72, 1116, 1349, 1352, 1355, 1358, 1646
ApoI RAATTY 2 cut(s) 1514, 1582
Asp700I GAANNNNTTC 2 cut(s) 471, 1173
AspLEI GCGC 2 cut(s) 38, 1146
AspS9I GGNCC 1 cut(s) 301
AsuC2I CCSGG 3 cut(s) 1202, 1203, 1421
AsuHPI GGTGA 1 cut(s) 1510
AvaI CYCGRG 1 cut(s) 1201
AvaII GGWCC 1 cut(s) 301
BaeGI GKGCMC 1 cut(s) 1631
BaeI ACNNNNGTAYC 2 cut(s) 1386, 1419
BanI GGYRCC 1 cut(s) 1628
BbvCI CCTCAGC 1 cut(s) 982
BbvI GCAGC 7 cut(s) 59, 1128, 1345, 1361, 1364, 1367, 1633
BccI CCATC 2 cut(s) 128, 866
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciT130I CCWGG 4 cut(s) 252, 457, 477, 1655
BciVI GTATCC 1 cut(s) 1103
BcnI CCSGG 3 cut(s) 1202, 1203, 1421
BcoDI GTCTC 1 cut(s) 426
BcuI ACTAGT 2 cut(s) 701, 764
BfaI CTAG 5 cut(s) 20, 702, 765, 924, 1702
BfmI CTRYAG 2 cut(s) 366, 1359
BfuAI ACCTGC 1 cut(s) 501
BfuI GTATCC 1 cut(s) 1103
BisI GCNGC 8 cut(s) 73, 191, 1117, 1350, 1353, 1356, 1359, 1647
BlpI GCTNAGC 2 cut(s) 1278, 1283
BlsI GCNGC 8 cut(s) 74, 192, 1118, 1351, 1354, 1357, 1360, 1648
BmcAI AGTACT 2 cut(s) 928, 1250
Bme1390I CCNGG 7 cut(s) 252, 457, 477, 1202, 1203, 1421, 1655
Bme18I GGWCC 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 1201
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 4 cut(s) 714, 1207, 1366, 1630
BmrFI CCNGG 7 cut(s) 252, 457, 477, 1202, 1203, 1421, 1655
BmsI GCATC 3 cut(s) 326, 829, 1135
Bpu10I CCTNAGC 2 cut(s) 982, 1333
Bpu1102I GCTNAGC 2 cut(s) 1278, 1283
BpuEI CTTGAG 3 cut(s) 1078, 1254, 1627
BpuMI CCSGG 3 cut(s) 1202, 1203, 1421
BsaAI YACGTR 1 cut(s) 1691
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 4 cut(s) 1200, 1201, 1419, 1551
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 3 cut(s) 826, 1510, 1566
Bse1I ACTGG 4 cut(s) 318, 760, 957, 1120
Bse8I GATNNNNATC 1 cut(s) 204
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 4 cut(s) 252, 457, 477, 1655
BseDI CCNNGG 4 cut(s) 1200, 1201, 1419, 1551
BseGI GGATG 4 cut(s) 648, 810, 858, 1415
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 3 cut(s) 826, 1510, 1566
BseMII CTCAG 3 cut(s) 996, 1239, 1269
BseNI ACTGG 4 cut(s) 318, 760, 957, 1120
BseRI GAGGAG 2 cut(s) 596, 1357
BseSI GKGCMC 1 cut(s) 1631
BseXI GCAGC 7 cut(s) 59, 1128, 1345, 1361, 1364, 1367, 1633
BseYI CCCAGC 1 cut(s) 403
Bsh1236I CGCG 3 cut(s) 36, 1086, 1599
BshFI GGCC 1 cut(s) 956
BshNI GGYRCC 1 cut(s) 1628
BsiHKCI CYCGRG 1 cut(s) 1201
BsiSI CCGG 4 cut(s) 174, 827, 1202, 1421
BslI CCNNNNNNNGG 3 cut(s) 826, 1510, 1566
BsmAI GTCTC 1 cut(s) 426
BsnI GGCC 1 cut(s) 956
BsoBI CYCGRG 1 cut(s) 1201
Bsp1286I GDGCHC 1 cut(s) 1631
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 8 cut(s) 566, 831, 931, 1043, 1423, 1469, 1500, 1695
Bsp1720I GCTNAGC 2 cut(s) 1278, 1283
Bsp19I CCATGG 1 cut(s) 1551
Bsp68I TCGCGA 1 cut(s) 1086
BspACI CCGC 5 cut(s) 190, 1105, 1504, 1525, 1597
BspANI GGCC 1 cut(s) 956
BspCNI CTCAG 3 cut(s) 995, 1238, 1270
BspEI TCCGGA 1 cut(s) 826
BspFNI CGCG 3 cut(s) 36, 1086, 1599
BspLI GGNNCC 4 cut(s) 714, 1207, 1366, 1630
BspMAI CTGCAG 2 cut(s) 370, 1363
BspMI ACCTGC 1 cut(s) 501
BspPI GGATC 4 cut(s) 1038, 1431, 1495, 1703
BspQI GCTCTTC 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 1628
BsrI ACTGG 4 cut(s) 318, 760, 957, 1120
BssECI CCNNGG 4 cut(s) 1200, 1201, 1419, 1551
BssMI GATC 8 cut(s) 566, 831, 931, 1043, 1423, 1469, 1500, 1695
BssT1I CCWWGG 1 cut(s) 1551
Bst2UI CCWGG 4 cut(s) 252, 457, 477, 1655
Bst4CI ACNGT 3 cut(s) 524, 868, 1393
Bst6I CTCTTC 2 cut(s) 172, 614
BstAPI GCANNNNNTGC 2 cut(s) 1033, 1358
BstBAI YACGTR 1 cut(s) 1691
BstC8I GCNNGC 3 cut(s) 508, 1025, 1363
BstDEI CTNAG 7 cut(s) 982, 1225, 1278, 1283, 1333, 1466, 1684
BstDSI CCRYGG 1 cut(s) 1551
BstF5I GGATG 4 cut(s) 648, 810, 858, 1415
BstFNI CGCG 3 cut(s) 36, 1086, 1599
BstHHI GCGC 2 cut(s) 38, 1146
BstKTI GATC 8 cut(s) 569, 834, 934, 1046, 1426, 1472, 1503, 1698
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 8 cut(s) 566, 831, 931, 1043, 1423, 1469, 1500, 1695
BstMWI GCNNNNNNNGC 9 cut(s) 788, 1033, 1113, 1150, 1159, 1274, 1346, 1355, 1358
BstNI CCWGG 4 cut(s) 252, 457, 477, 1655
BstNSI RCATGY 1 cut(s) 1036
BstSCI CCNGG 7 cut(s) 250, 455, 475, 1200, 1201, 1419, 1653
BstSFI CTRYAG 2 cut(s) 366, 1359
BstSLI GKGCMC 1 cut(s) 1631
BstSNI TACGTA 1 cut(s) 1691
BstUI CGCG 3 cut(s) 36, 1086, 1599
BstV1I GCAGC 7 cut(s) 59, 1128, 1345, 1361, 1364, 1367, 1633
BsuI GTATCC 1 cut(s) 1103
BsuRI GGCC 1 cut(s) 956
BtgI CCRYGG 1 cut(s) 1551
BtsCI GGATG 4 cut(s) 648, 810, 858, 1415
BtsI GCAGTG 2 cut(s) 6, 1668
BtsIMutI CAGTG 3 cut(s) 6, 964, 1668
BtuMI TCGCGA 1 cut(s) 1086
BveI ACCTGC 1 cut(s) 501
Cac8I GCNNGC 3 cut(s) 508, 1025, 1363
CaiI CAGNNNCTG 1 cut(s) 1358
CfoI GCGC 2 cut(s) 38, 1146
Cfr13I GGNCC 1 cut(s) 301
Cfr9I CCCGGG 1 cut(s) 1201
CsiI ACCWGGT 1 cut(s) 455
Csp6I GTAC 3 cut(s) 927, 1249, 1688
CviAII CATG 4 cut(s) 58, 376, 1033, 1552
CviQI GTAC 3 cut(s) 927, 1249, 1688
DdeI CTNAG 7 cut(s) 982, 1225, 1278, 1283, 1333, 1466, 1684
DpnI GATC 8 cut(s) 568, 833, 933, 1045, 1425, 1471, 1502, 1697
DpnII GATC 8 cut(s) 566, 831, 931, 1043, 1423, 1469, 1500, 1695
DraI TTTAAA 1 cut(s) 1263
Eam1104I CTCTTC 2 cut(s) 172, 614
EarI CTCTTC 2 cut(s) 172, 614
Eco105I TACGTA 1 cut(s) 1691
Eco130I CCWWGG 1 cut(s) 1551
Eco32I GATATC 2 cut(s) 1137, 1572
Eco47I GGWCC 1 cut(s) 301
Eco88I CYCGRG 1 cut(s) 1201
EcoRI GAATTC 1 cut(s) 1514
EcoRII CCWGG 4 cut(s) 250, 455, 475, 1653
EcoRV GATATC 2 cut(s) 1137, 1572
EcoT14I CCWWGG 1 cut(s) 1551
ErhI CCWWGG 1 cut(s) 1551
FaeI CATG 4 cut(s) 61, 379, 1036, 1555
FalI AAGNNNNNCTT 2 cut(s) 154, 186
FatI CATG 4 cut(s) 57, 375, 1032, 1551
FauI CCCGC 2 cut(s) 1112, 1518
FauNDI CATATG 1 cut(s) 1131
Fnu4HI GCNGC 8 cut(s) 73, 191, 1117, 1350, 1353, 1356, 1359, 1647
FokI GGATG 4 cut(s) 635, 797, 845, 1402
Fsp4HI GCNGC 8 cut(s) 73, 191, 1117, 1350, 1353, 1356, 1359, 1647
FspBI CTAG 5 cut(s) 20, 702, 765, 924, 1702
GlaI GCGC 2 cut(s) 37, 1145
GluI GCNGC 8 cut(s) 73, 191, 1117, 1350, 1353, 1356, 1359, 1647
GsaI CCCAGC 1 cut(s) 407
HaeIII GGCC 1 cut(s) 956
HapII CCGG 4 cut(s) 174, 827, 1202, 1421
HhaI GCGC 2 cut(s) 38, 1146
Hin1II CATG 4 cut(s) 61, 379, 1036, 1555
Hin6I GCGC 2 cut(s) 36, 1144
HinP1I GCGC 2 cut(s) 36, 1144
HindIII AAGCTT 2 cut(s) 1171, 1540
HinfI GANTC 5 cut(s) 255, 1069, 1412, 1462, 1577
HpaII CCGG 4 cut(s) 174, 827, 1202, 1421
HphI GGTGA 1 cut(s) 1510
Hpy188I TCNGA 4 cut(s) 322, 806, 1141, 1576
HpyAV CCTTC 9 cut(s) 20, 22, 56, 120, 924, 1063, 1082, 1660, 1662
HpyCH4III ACNGT 3 cut(s) 524, 868, 1393
HpyCH4IV ACGT 1 cut(s) 1690
HpyF10VI GCNNNNNNNGC 9 cut(s) 788, 1033, 1113, 1150, 1159, 1274, 1346, 1355, 1358
HpyF3I CTNAG 7 cut(s) 982, 1225, 1278, 1283, 1333, 1466, 1684
HpySE526I ACGT 1 cut(s) 1690
Hsp92II CATG 4 cut(s) 61, 379, 1036, 1555
HspAI GCGC 2 cut(s) 36, 1144
Kpn2I TCCGGA 1 cut(s) 826
Kzo9I GATC 8 cut(s) 566, 831, 931, 1043, 1423, 1469, 1500, 1695
LguI GCTCTTC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 1337, 1370
Lsp1109I GCAGC 7 cut(s) 59, 1128, 1345, 1361, 1364, 1367, 1633
LweI GCATC 3 cut(s) 326, 829, 1135
MabI ACCWGGT 1 cut(s) 455
MaeI CTAG 5 cut(s) 20, 702, 765, 924, 1702
MaeII ACGT 1 cut(s) 1690
MaeIII GTNAC 3 cut(s) 736, 971, 1393
MalI GATC 8 cut(s) 568, 833, 933, 1045, 1425, 1471, 1502, 1697
MboI GATC 8 cut(s) 566, 831, 931, 1043, 1423, 1469, 1500, 1695
MhlI GDGCHC 1 cut(s) 1631
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 2 cut(s) 471, 1173
MseI TTAA 3 cut(s) 360, 1262, 1613
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 1358
MspI CCGG 4 cut(s) 174, 827, 1202, 1421
MspR9I CCNGG 7 cut(s) 252, 457, 477, 1202, 1203, 1421, 1655
MvaI CCWGG 4 cut(s) 252, 457, 477, 1655
MvnI CGCG 3 cut(s) 36, 1086, 1599
MwoI GCNNNNNNNGC 9 cut(s) 788, 1033, 1113, 1150, 1159, 1274, 1346, 1355, 1358
NciI CCSGG 3 cut(s) 1202, 1203, 1421
NcoI CCATGG 1 cut(s) 1551
NdeI CATATG 1 cut(s) 1131
NdeII GATC 8 cut(s) 566, 831, 931, 1043, 1423, 1469, 1500, 1695
NlaIII CATG 4 cut(s) 61, 379, 1036, 1555
NlaIV GGNNCC 4 cut(s) 714, 1207, 1366, 1630
NmeAIII GCCGAG 1 cut(s) 166
NruI TCGCGA 1 cut(s) 1086
NspI RCATGY 1 cut(s) 1036
PciSI GCTCTTC 1 cut(s) 172
PdmI GAANNNNTTC 2 cut(s) 471, 1173
PfeI GAWTC 5 cut(s) 255, 1069, 1412, 1462, 1577
PflMI CCANNNNNTGG 1 cut(s) 1566
PfoI TCCNGGA 3 cut(s) 250, 475, 1653
PkrI GCNGC 8 cut(s) 74, 192, 1118, 1351, 1354, 1357, 1360, 1648
Ppu21I YACGTR 1 cut(s) 1691
Psp6I CCWGG 4 cut(s) 250, 455, 475, 1653
PspFI CCCAGC 1 cut(s) 403
PspGI CCWGG 4 cut(s) 250, 455, 475, 1653
PspN4I GGNNCC 4 cut(s) 714, 1207, 1366, 1630
PspPI GGNCC 1 cut(s) 301
PstI CTGCAG 2 cut(s) 370, 1363
PstNI CAGNNNCTG 1 cut(s) 1358
PvuII CAGCTG 1 cut(s) 1358
RruI TCGCGA 1 cut(s) 1086
RsaI GTAC 3 cut(s) 928, 1250, 1689
RsaNI GTAC 3 cut(s) 927, 1249, 1688
RseI CAYNNNNRTG 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 3 cut(s) 360, 1262, 1613
SatI GCNGC 8 cut(s) 73, 191, 1117, 1350, 1353, 1356, 1359, 1647
Sau3AI GATC 8 cut(s) 566, 831, 931, 1043, 1423, 1469, 1500, 1695
Sau96I GGNCC 1 cut(s) 301
ScaI AGTACT 2 cut(s) 928, 1250
ScrFI CCNGG 7 cut(s) 252, 457, 477, 1202, 1203, 1421, 1655
SduI GDGCHC 1 cut(s) 1631
SexAI ACCWGGT 1 cut(s) 455
SfaNI GCATC 3 cut(s) 326, 829, 1135
SfcI CTRYAG 2 cut(s) 366, 1359
SinI GGWCC 1 cut(s) 301
SmaI CCCGGG 1 cut(s) 1203
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 3 cut(s) 1057, 1269, 1606
SmoI CTYRAG 3 cut(s) 1057, 1269, 1606
SnaBI TACGTA 1 cut(s) 1691
SpeI ACTAGT 2 cut(s) 701, 764
SsiI CCGC 5 cut(s) 190, 1105, 1504, 1525, 1597
SspI AATATT 1 cut(s) 596
SspMI CTAG 5 cut(s) 20, 702, 765, 924, 1702
StyD4I CCNGG 7 cut(s) 250, 455, 475, 1200, 1201, 1419, 1653
StyI CCWWGG 1 cut(s) 1551
TaaI ACNGT 3 cut(s) 524, 868, 1393
TaiI ACGT 1 cut(s) 1693
TaqI TCGA 6 cut(s) 49, 132, 198, 231, 834, 1698
TatI WGTACW 2 cut(s) 926, 1248
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 5 cut(s) 255, 1069, 1412, 1462, 1577
Tru1I TTAA 3 cut(s) 360, 1262, 1613
Tru9I TTAA 3 cut(s) 360, 1262, 1613
TscAI CASTG 3 cut(s) 13, 964, 1668
TseI GCWGC 7 cut(s) 72, 1116, 1349, 1352, 1355, 1358, 1646
TspMI CCCGGG 1 cut(s) 1201
TspRI CASTG 3 cut(s) 13, 964, 1668
Van91I CCANNNNNTGG 1 cut(s) 1566
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 2 cut(s) 1514, 1582
XceI RCATGY 1 cut(s) 1036
XmaI CCCGGG 1 cut(s) 1201
XmnI GAANNNNTTC 2 cut(s) 471, 1173
XspI CTAG 5 cut(s) 20, 702, 765, 924, 1702
ZrmI AGTACT 2 cut(s) 928, 1250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.