Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015221

Physical Location & Seq

Genomic Coordinates Forward (+)

23269914 .. 23271092

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAATAGTTTCGAGCCACAAAGCCAAGACTCTTTGCAAAGAAGGTTTCATCAAGACAACAGCACCACACAACAACCTCGTGACACCACGACACCTTTCATACCCAAACCGGCTTCCAAAAACCATAATAATAGCAACTCCAGCTCTGGAGCGGCCGGGAGATCATTCCAAGGCTTTGGGCTTAACGTAGAGGACGATCTTGTTTCATCGGTGGTTCCTCCGGTTACGGTTGTGCTAGAGGGACGTTCTATATGTCAACGCATAAGCCTAGACAAGCATGGGAGTTATCAGAGCTTGGCTTCGGCTCTAAGGCAAATGTTTGTCGATGGAGCTGATTCAACGGACGATCTTGATCTGTCAAACGCCATTCCTGGCCATCTTATTGCTTATGAAGACATGGAGAACGATCTCCTTCTTGCCGGAGATCTTACTTGGAAGGACTTTGTTCGTGTAGCGAAGAGAATTCGAATCTTGCCGGTCAAGGGAAACACAAGACAAGTTAAAAGAAACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

171

Amino Acids

18.94

Weight (kDa)

6.07

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	55 - 158	2.9e-12	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57420
fragaria_vesca	FvH4_4g08200
malus_domestica	MD13G1253600.v1.1
prunus_persica	Prupe.1G085900_v2.0.a1
pyrus_communis	pycom13g22450
rosa_chinensis	RchiOBHm_Chr4g0402441
rosa_laevigata	RLG00000009083
rosa_multiflora	Rmu_ssc0000330.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347140
rosa_rugosa	Rorug04G0035400 Rorug04G0035500
rosa_samantha	Rh4AG112800 Rh4BG105300 Rh4CG119600 Rh4DG104600
rosa_wichuraiana	Rw4G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	152
AciI	CCGC	1 cut(s)	152
AcoI	YGGCCR	2 cut(s)	153, 373
AcsI	RAATTY	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	482
AgsI	TTSAA	1 cut(s)	339
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	3 cut(s)	144, 294, 332
AluI	AGCT	3 cut(s)	144, 294, 332
AoxI	GGCC	2 cut(s)	153, 373
ApoI	RAATTY	1 cut(s)	462
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	157
AsuII	TTCGAA	1 cut(s)	466
BalI	TGGCCA	1 cut(s)	375
BauI	CACGAG	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	399
BccI	CCATC	2 cut(s)	320, 384
BciT130I	CCWGG	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	157
BfaI	CTAG	2 cut(s)	236, 269
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	157, 372
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	2 cut(s)	157, 372
BpiI	GAAGAC	1 cut(s)	399
BpmI	CTGGAG	2 cut(s)	124, 168
Bpu14I	TTCGAA	1 cut(s)	466
BpuMI	CCSGG	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse118I	RCCGGY	2 cut(s)	109, 475
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseX3I	CGGCCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	155, 375
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	5 cut(s)	110, 156, 221, 420, 476
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	2 cut(s)	155, 375
Bsp119I	TTCGAA	1 cut(s)	466
Bsp143I	GATC	6 cut(s)	161, 196, 346, 352, 406, 424
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	2 cut(s)	155, 375
BspLI	GGNNCC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	466
BsrBI	CCGCTC	1 cut(s)	152
BsrFI	RCCGGY	2 cut(s)	109, 475
BssAI	RCCGGY	2 cut(s)	109, 475
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	6 cut(s)	161, 196, 346, 352, 406, 424
BssSI	CACGAG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	169
Bst2BI	CACGAG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	452
BstBI	TTCGAA	1 cut(s)	466
BstDEI	CTNAG	1 cut(s)	308
BstKTI	GATC	6 cut(s)	164, 199, 349, 355, 409, 427
BstMBI	GATC	6 cut(s)	161, 196, 346, 352, 406, 424
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	2 cut(s)	155, 370
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	424
BstZI	CGGCCG	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	155, 375
Cfr10I	RCCGGY	2 cut(s)	109, 475
CviAII	CATG	2 cut(s)	278, 397
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	6 cut(s)	163, 198, 348, 354, 408, 426
DpnII	GATC	6 cut(s)	161, 196, 346, 352, 406, 424
EaeI	YGGCCR	2 cut(s)	153, 373
EagI	CGGCCG	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
EclXI	CGGCCG	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	169
Eco52I	CGGCCG	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	2 cut(s)	281, 400
FaiI	YATR	8 cut(s)	101, 126, 251, 253, 263, 279, 390, 398
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	2 cut(s)	277, 396
Fnu4HI	GCNGC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	2 cut(s)	236, 269
GluI	GCNGC	1 cut(s)	153
GsuI	CTGGAG	2 cut(s)	124, 168
HaeIII	GGCC	2 cut(s)	155, 375
HapII	CCGG	5 cut(s)	110, 156, 221, 420, 476
Hin1II	CATG	2 cut(s)	281, 400
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HinfI	GANTC	3 cut(s)	29, 335, 468
HpaII	CCGG	5 cut(s)	110, 156, 221, 420, 476
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	4 cut(s)	53, 80, 147, 350
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	36, 422, 430
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	2 cut(s)	186, 244
HpyCH4V	TGCA	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	2 cut(s)	186, 244
Hsp92II	CATG	2 cut(s)	281, 400
Kzo9I	GATC	6 cut(s)	161, 196, 346, 352, 406, 424
LmnI	GCTCC	2 cut(s)	149, 329
LpnPI	CCDG	9 cut(s)	123, 132, 154, 169, 234, 357, 384, 433, 489
MaeI	CTAG	2 cut(s)	236, 269
MaeII	ACGT	2 cut(s)	186, 244
MaeIII	GTNAC	2 cut(s)	80, 223
MalI	GATC	6 cut(s)	163, 198, 348, 354, 408, 426
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	6 cut(s)	161, 196, 346, 352, 406, 424
MboII	GAAGA	2 cut(s)	404, 469
MflI	RGATCY	1 cut(s)	424
MlsI	TGGCCA	1 cut(s)	375
MluCI	AATT	1 cut(s)	462
MluNI	TGGCCA	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	4 cut(s)	87, 184, 228, 232
Mox20I	TGGCCA	1 cut(s)	375
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	375
MseI	TTAA	2 cut(s)	183, 501
Msp20I	TGGCCA	1 cut(s)	375
MspI	CCGG	5 cut(s)	110, 156, 221, 420, 476
MspR9I	CCNGG	2 cut(s)	157, 372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	6 cut(s)	161, 196, 346, 352, 406, 424
NlaIII	CATG	2 cut(s)	281, 400
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	335, 468
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	183, 501
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	6 cut(s)	161, 196, 346, 352, 406, 424
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	157, 372
SetI	ASST	8 cut(s)	47, 79, 97, 146, 189, 247, 296, 334
SfuI	TTCGAA	1 cut(s)	466
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	2 cut(s)	236, 269
StyD4I	CCNGG	2 cut(s)	155, 370
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	2 cut(s)	189, 247
TaqI	TCGA	3 cut(s)	12, 324, 466
TasI	AATT	1 cut(s)	462
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	335, 468
Tru1I	TTAA	2 cut(s)	183, 501
Tru9I	TTAA	2 cut(s)	183, 501
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	5 cut(s)	17, 38, 88, 195, 405
TspGWI	ACGGA	1 cut(s)	356
XapI	RAATTY	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	236, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.