Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0015221

Physical Location & Seq

Genomic Coordinates Forward (+)

22973584 .. 22974003

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG119600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAATTCTTTCCAATCACAGAGACAAGACTCGTTGAAAAGGAGGTGGCAAGAGATCAGGAGATCAAGTGCAACCACTCAACCTTCTTCTGATATGATCAGAAAACCTAATGGTGCTCTCAACGGCTTCCCAGGCCTTCTTGGTGATGATGATCTTGTTTCCATGTTGGTCCCTCCGGTGACCGTGGTGCTCGAAGGCCGCTCGATCTGCCAGCGCATCAGTCTCCAAAAGCATACGAGCTACCAAAGTCTAGCCAAAGCCCTCCGGCAAATGTTTGTGGATGGCGGCGATGTTGGAGCTACTGCAGCAGATATTGACAATAAGGATCTCGATCTTTCTAATGCCGTTCCGGGTCATGTTATTGCTTATGAAGACATGGAAAACGATCTCCTTCTTGCCGGAGACCTGAATTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

139

Amino Acids

15.33

Weight (kDa)

5.27

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	60 - 139	3.5e-10	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57420
fragaria_vesca	FvH4_4g08200
malus_domestica	MD13G1253600.v1.1
prunus_persica	Prupe.1G085900_v2.0.a1
pyrus_communis	pycom13g22450
rosa_chinensis	RchiOBHm_Chr4g0402441
rosa_laevigata	RLG00000009083
rosa_multiflora	Rmu_ssc0000330.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347140
rosa_rugosa	Rorug04G0035400 Rorug04G0035500
rosa_samantha	Rh4AG112800 Rh4BG105300 Rh4CG119600 Rh4DG104600
rosa_wichuraiana	Rw4G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	201
AciI	CCGC	2 cut(s)	199, 285
AclWI	GGATC	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	4
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	240, 299
AluI	AGCT	2 cut(s)	240, 299
Alw21I	GWGCWC	2 cut(s)	118, 192
Alw26I	GTCTC	3 cut(s)	16, 227, 396
AlwI	GGATC	1 cut(s)	333
AoxI	GGCC	2 cut(s)	133, 196
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	155, 190
AvaII	GGWCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	2 cut(s)	118, 192
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	2 cut(s)	139, 329
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	3 cut(s)	16, 227, 396
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	3 cut(s)	199, 286, 306
BlsI	GCNGC	3 cut(s)	200, 287, 307
Bme1390I	CCNGG	2 cut(s)	132, 351
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	2 cut(s)	132, 351
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	351
BsaBI	GATNNNNATC	2 cut(s)	150, 330
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	130, 183
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bse8I	GATNNNNATC	2 cut(s)	150, 330
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	130, 183
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	2 cut(s)	150, 330
BseXI	GCAGC	1 cut(s)	317
BshFI	GGCC	2 cut(s)	135, 198
BsiHKAI	GWGCWC	2 cut(s)	118, 192
BsiSI	CCGG	4 cut(s)	176, 265, 350, 399
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	3 cut(s)	16, 227, 396
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	135, 198
Bso31I	GGTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	2 cut(s)	118, 192
Bsp143I	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
BspACI	CCGC	2 cut(s)	199, 285
BspANI	GGCC	2 cut(s)	135, 198
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	307
BspPI	GGATC	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	396
BsrBI	CCGCTC	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	130, 183
BssMI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	183
BstEII	GGTNACC	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	8 cut(s)	57, 65, 99, 154, 207, 328, 334, 388
BstMAI	GTCTC	3 cut(s)	16, 227, 396
BstMBI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 207, 305
BstNI	CCWGG	1 cut(s)	132
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	130, 349
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	317
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	135, 198
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	169
CviAII	CATG	3 cut(s)	163, 356, 376
CviJI	RGCY	7 cut(s)	126, 135, 198, 240, 254, 260, 299
CviKI_1	RGCY	7 cut(s)	126, 135, 198, 240, 254, 260, 299
DpnI	GATC	8 cut(s)	56, 64, 98, 153, 206, 327, 333, 387
DpnII	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
Eco147I	AGGCCT	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	169
Eco91I	GGTNACC	1 cut(s)	178
EcoO65I	GGTNACC	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	130
FaeI	CATG	3 cut(s)	166, 359, 379
FaiI	YATR	6 cut(s)	95, 164, 234, 357, 369, 377
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	162, 355, 375
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	199, 286, 306
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	199, 286, 306
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	3 cut(s)	199, 286, 306
HaeIII	GGCC	2 cut(s)	135, 198
HapII	CCGG	4 cut(s)	176, 265, 350, 399
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	166, 359, 379
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	4 cut(s)	176, 265, 350, 399
HphI	GGTGA	2 cut(s)	155, 190
Hpy188I	TCNGA	2 cut(s)	91, 101
Hpy188III	TCNNGA	2 cut(s)	58, 329
HpyAV	CCTTC	4 cut(s)	93, 146, 188, 401
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	71, 305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 207, 305
Hsp92II	CATG	3 cut(s)	166, 359, 379
HspAI	GCGC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	8 cut(s)	43, 117, 144, 189, 224, 278, 363, 412
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	8 cut(s)	56, 64, 98, 153, 206, 327, 333, 387
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
MboII	GAAGA	2 cut(s)	78, 383
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	118, 192
MluCI	AATT	2 cut(s)	4, 409
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	3 cut(s)	36, 183, 272
MroXI	GAANNNNTTC	1 cut(s)	8
MspI	CCGG	4 cut(s)	176, 265, 350, 399
MspR9I	CCNGG	2 cut(s)	132, 351
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	132, 207, 305
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
NlaIII	CATG	3 cut(s)	166, 359, 379
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	200, 287, 307
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	130
PspEI	GGTNACC	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	325
SatI	GCNGC	3 cut(s)	199, 286, 306
Sau3AI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	132, 351
SduI	GDGCHC	2 cut(s)	118, 192
SetI	ASST	6 cut(s)	47, 85, 109, 242, 301, 408
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	169
Sse9I	AATT	2 cut(s)	4, 409
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	2 cut(s)	199, 285
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	130, 349
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	3 cut(s)	192, 203, 330
TasI	AATT	2 cut(s)	4, 409
TauI	GCSGC	2 cut(s)	201, 288
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	17, 384
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	1 cut(s)	4
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.