Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0015221

Physical Location & Seq

Genomic Coordinates Forward (+)

20197641 .. 20198464

Gene Structure 824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G009040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAATTCTTTCCAATCACAGAGACAAGACTCGTTGAAAAGGAGGTGGCAAGAGATCAGGAGATCAAGTGCAACCACTCAACCTTCTTCTGATATGATCAGAAAACCTAATGGTGCTCTCAACGGCTTCCCAGGCCTTCTTGGTGATGATGATCTTGTTTCCACGTTGGTCCCTCCGGTGACCGTGGTGCTCGAAGGCCGCTCGATCTGCCAGCGCATCAGTCTCCAAAAGCATACGAGCTACCAAAGTCTAGCCAAAGCCCTCCGGCAAATGTTTGTGGATGGCGACGATGTTGGAGCTACTGCGGCCGATATTGACAATAAGGATCTCGATCTTTCTAATGCCGTTCCGGGTCATGTTATTGCTTATGAAGACATGGAAAACGATCTCCTTCTTGCCGGAGACCTGAATTGGAAGGATTTCGTACGCGTTGCCAAGAGAATTCGAATACTTCCTGCCAAGGCAAACTCAAGGAGGGGAGGGAGAAGGAACGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

165

Amino Acids

18.32

Weight (kDa)

9.46

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	59 - 152	1.6e-15	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57420
fragaria_vesca	FvH4_4g08200
malus_domestica	MD13G1253600.v1.1
prunus_persica	Prupe.1G085900_v2.0.a1
pyrus_communis	pycom13g22450
rosa_chinensis	RchiOBHm_Chr4g0402441
rosa_laevigata	RLG00000009083
rosa_multiflora	Rmu_ssc0000330.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347140
rosa_rugosa	Rorug04G0035400 Rorug04G0035500
rosa_samantha	Rh4AG112800 Rh4BG105300 Rh4CG119600 Rh4DG104600
rosa_wichuraiana	Rw4G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	201
AccII	CGCG	1 cut(s)	429
AciI	CCGC	2 cut(s)	199, 305
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	2 cut(s)	4, 441
AfaI	GTAC	1 cut(s)	426
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	240, 299
AluI	AGCT	2 cut(s)	240, 299
Alw21I	GWGCWC	2 cut(s)	118, 192
Alw26I	GTCTC	3 cut(s)	16, 227, 396
AlwI	GGATC	1 cut(s)	333
AoxI	GGCC	3 cut(s)	133, 196, 306
ApoI	RAATTY	2 cut(s)	4, 441
Asp700I	GAANNNNTTC	2 cut(s)	8, 419
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	155, 190
AsuII	TTCGAA	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	2 cut(s)	118, 192
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	2 cut(s)	139, 329
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	3 cut(s)	16, 227, 396
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	2 cut(s)	199, 306
BlsI	GCNGC	2 cut(s)	200, 307
Bme1390I	CCNGG	2 cut(s)	132, 351
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	2 cut(s)	132, 351
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	351
BsaBI	GATNNNNATC	2 cut(s)	150, 330
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	130, 183, 459
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bse8I	GATNNNNATC	2 cut(s)	150, 330
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	130, 183, 459
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	2 cut(s)	150, 330
BseX3I	CGGCCG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	135, 198, 308
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	118, 192
BsiSI	CCGG	4 cut(s)	176, 265, 350, 399
BsiWI	CGTACG	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	3 cut(s)	16, 227, 396
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	135, 198, 308
Bso31I	GGTCTC	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	445
Bsp1286I	GDGCHC	2 cut(s)	118, 192
Bsp143I	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
BspACI	CCGC	2 cut(s)	199, 305
BspANI	GGCC	3 cut(s)	135, 198, 308
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	396
BsrBI	CCGCTC	1 cut(s)	201
BssECI	CCNNGG	3 cut(s)	130, 183, 459
BssMI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	183
BstEII	GGTNACC	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	8 cut(s)	57, 65, 99, 154, 207, 328, 334, 388
BstMAI	GTCTC	3 cut(s)	16, 227, 396
BstMBI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 207, 305
BstNI	CCWGG	1 cut(s)	132
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	130, 349
BstUI	CGCG	1 cut(s)	429
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BstZI	CGGCCG	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	135, 198, 308
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	2 cut(s)	356, 376
CviJI	RGCY	8 cut(s)	126, 135, 198, 240, 254, 260, 299, 308
CviKI_1	RGCY	8 cut(s)	126, 135, 198, 240, 254, 260, 299, 308
CviQI	GTAC	1 cut(s)	425
DpnI	GATC	8 cut(s)	56, 64, 98, 153, 206, 327, 333, 387
DpnII	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
EaeI	YGGCCR	1 cut(s)	306
EagI	CGGCCG	1 cut(s)	306
EclXI	CGGCCG	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	459
Eco147I	AGGCCT	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	169
Eco52I	CGGCCG	1 cut(s)	306
Eco91I	GGTNACC	1 cut(s)	178
EcoO65I	GGTNACC	1 cut(s)	178
EcoRI	GAATTC	2 cut(s)	4, 441
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	2 cut(s)	359, 379
FaiI	YATR	6 cut(s)	95, 234, 357, 369, 377, 496
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	355, 375
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	199, 306
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	199, 306
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	2 cut(s)	199, 306
HaeIII	GGCC	3 cut(s)	135, 198, 308
HapII	CCGG	4 cut(s)	176, 265, 350, 399
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	359, 379
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	4 cut(s)	176, 265, 350, 399
HphI	GGTGA	2 cut(s)	155, 190
Hpy188I	TCNGA	2 cut(s)	91, 101
Hpy188III	TCNNGA	2 cut(s)	58, 329
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	6 cut(s)	93, 146, 188, 401, 409, 480
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 207, 305
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	359, 379
HspAI	GCGC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
LmnI	GCTCC	1 cut(s)	296
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	8 cut(s)	56, 64, 98, 153, 206, 327, 333, 387
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
MboII	GAAGA	2 cut(s)	78, 383
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	118, 192
MluCI	AATT	3 cut(s)	4, 409, 441
MluI	ACGCGT	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	5 cut(s)	36, 183, 272, 468, 473
MroXI	GAANNNNTTC	2 cut(s)	8, 419
MspI	CCGG	4 cut(s)	176, 265, 350, 399
MspR9I	CCNGG	2 cut(s)	132, 351
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	3 cut(s)	132, 207, 305
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
NlaIII	CATG	2 cut(s)	359, 379
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	445
PceI	AGGCCT	1 cut(s)	135
PdmI	GAANNNNTTC	2 cut(s)	8, 419
Pfl23II	CGTACG	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	200, 307
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	130
PspEI	GGTNACC	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	130
PspLI	CGTACG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SatI	GCNGC	2 cut(s)	199, 306
Sau3AI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	132, 351
SduI	GDGCHC	2 cut(s)	118, 192
SetI	ASST	7 cut(s)	47, 85, 109, 167, 242, 301, 408
SfaNI	GCATC	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	445
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	3 cut(s)	4, 409, 441
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	2 cut(s)	199, 305
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	130, 349
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	4 cut(s)	192, 203, 330, 445
TasI	AATT	3 cut(s)	4, 409, 441
TauI	GCSGC	2 cut(s)	201, 308
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	17, 384
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	2 cut(s)	4, 441
XmnI	GAANNNNTTC	2 cut(s)	8, 419
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.