Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015221

Physical Location & Seq

Genomic Coordinates Reverse (-)

19961584 .. 19962213

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCAGTAGTCTCCATGGCTTCCCAGGACTTCTTGACGACGATCTTGTTTCCACCGTGGTCCCTCCGGTCACCATTGTGCTTGAAGGCCGTTCGATCTGCCAGCGCATTTGCCTCCAGAAACATGCAAGCTACCAAAGTCTTGCCAAGGCCCTCCGCCAGATGTTCGTGGATGGTGGCGATGTGGGAACCATTAACGAGAAGGATCTTGATCTTTCAAATGCTGTTCCTGGTCATGTTATTGCTTATGAAGACATGGAAGATCGATCTTCTTCTTGCCGGTGACCTCAATTGGAAGGATTTCGTACGTGTAGCGAAGAGAATTCGGATAGTGCCAGCCAAGGGAAATTCAAGGAGGGGAAGAATGGGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

125

Amino Acids

14.2

Weight (kDa)

11.81

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57420
fragaria_vesca	FvH4_4g08200
malus_domestica	MD13G1253600.v1.1
prunus_persica	Prupe.1G085900_v2.0.a1
pyrus_communis	pycom13g22450
rosa_chinensis	RchiOBHm_Chr4g0402441
rosa_laevigata	RLG00000009083
rosa_multiflora	Rmu_ssc0000330.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347140
rosa_rugosa	Rorug04G0035400 Rorug04G0035500
rosa_samantha	Rh4AG112800 Rh4BG105300 Rh4CG119600 Rh4DG104600
rosa_wichuraiana	Rw4G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	2 cut(s)	321, 346
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	3 cut(s)	85, 218, 351
AjnI	CCWGG	2 cut(s)	24, 228
AleI	CACNNNNGTG	1 cut(s)	76
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	2 cut(s)	87, 149
ApoI	RAATTY	2 cut(s)	321, 346
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	60, 150
AsuHPI	GGTGA	2 cut(s)	63, 293
AvaII	GGWCC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	257
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	26, 230
BcoDI	GTCTC	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	26, 230
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	60, 150
BmiI	GGNNCC	2 cut(s)	62, 189
BmrFI	CCNGG	2 cut(s)	26, 230
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	100
Bsa29I	ATCGAT	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	209
BsaJI	CCNNGG	5 cut(s)	15, 24, 56, 146, 339
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse118I	RCCGGY	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	209
BseBI	CCWGG	2 cut(s)	26, 230
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	5 cut(s)	15, 24, 56, 146, 339
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	89, 151
BshVI	ATCGAT	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	67, 279
BsiWI	CGTACG	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	89, 151
Bsp143I	GATC	6 cut(s)	42, 95, 204, 210, 261, 265
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	2 cut(s)	89, 151
BspDI	ATCGAT	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	62, 189
BspPI	GGATC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	5 cut(s)	15, 24, 56, 146, 339
BssMI	GATC	6 cut(s)	42, 95, 204, 210, 261, 265
BssT1I	CCWWGG	3 cut(s)	15, 146, 339
Bst2UI	CCWGG	2 cut(s)	26, 230
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	3 cut(s)	103, 129, 336
BstDSI	CCRYGG	2 cut(s)	15, 56
BstEII	GGTNACC	2 cut(s)	69, 281
BstF5I	GGATG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	6 cut(s)	45, 98, 207, 213, 264, 268
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	6 cut(s)	42, 95, 204, 210, 261, 265
BstNI	CCWGG	2 cut(s)	26, 230
BstNSI	RCATGY	1 cut(s)	127
BstPI	GGTNACC	2 cut(s)	69, 281
BstSCI	CCNGG	2 cut(s)	24, 228
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	89, 151
BsuTUI	ATCGAT	1 cut(s)	264
BtgI	CCRYGG	2 cut(s)	15, 56
BtgZI	GCGATG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	177
Cac8I	GCNNGC	3 cut(s)	103, 129, 336
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	60, 150
ClaI	ATCGAT	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	4 cut(s)	16, 124, 235, 255
CviJI	RGCY	5 cut(s)	20, 89, 131, 151, 338
CviKI_1	RGCY	5 cut(s)	20, 89, 131, 151, 338
CviQI	GTAC	1 cut(s)	305
DpnI	GATC	6 cut(s)	44, 97, 206, 212, 263, 267
DpnII	GATC	6 cut(s)	42, 95, 204, 210, 261, 265
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
EciI	GGCGGA	1 cut(s)	145
Eco130I	CCWWGG	3 cut(s)	15, 146, 339
Eco47I	GGWCC	1 cut(s)	60
Eco91I	GGTNACC	2 cut(s)	69, 281
EcoO109I	RGGNCCY	1 cut(s)	150
EcoO65I	GGTNACC	2 cut(s)	69, 281
EcoRI	GAATTC	1 cut(s)	321
EcoRII	CCWGG	2 cut(s)	24, 228
EcoT14I	CCWWGG	3 cut(s)	15, 146, 339
ErhI	CCWWGG	3 cut(s)	15, 146, 339
FaeI	CATG	4 cut(s)	19, 127, 238, 258
FaiI	YATR	6 cut(s)	17, 125, 236, 248, 256, 373
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	4 cut(s)	15, 123, 234, 254
FokI	GGATG	1 cut(s)	184
GlaI	GCGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	89, 151
HapII	CCGG	2 cut(s)	67, 279
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	4 cut(s)	19, 127, 238, 258
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HpaII	CCGG	2 cut(s)	67, 279
HphI	GGTGA	2 cut(s)	63, 293
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	3 cut(s)	34, 117, 208
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	79, 195, 289
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	4 cut(s)	19, 127, 238, 258
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	6 cut(s)	42, 95, 204, 210, 261, 265
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	69, 281
MalI	GATC	6 cut(s)	44, 97, 206, 212, 263, 267
MboI	GATC	6 cut(s)	42, 95, 204, 210, 261, 265
MboII	GAAGA	6 cut(s)	260, 262, 263, 271, 328, 372
MfeI	CAATTG	1 cut(s)	289
MflI	RGATCY	1 cut(s)	204
MluCI	AATT	3 cut(s)	289, 321, 346
MnlI	CCTC	5 cut(s)	74, 124, 163, 296, 348
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	76
MspI	CCGG	2 cut(s)	67, 279
MspR9I	CCNGG	2 cut(s)	26, 230
MunI	CAATTG	1 cut(s)	289
MvaI	CCWGG	2 cut(s)	26, 230
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	6 cut(s)	42, 95, 204, 210, 261, 265
NlaIII	CATG	4 cut(s)	19, 127, 238, 258
NlaIV	GGNNCC	2 cut(s)	62, 189
NmuCI	GTSAC	2 cut(s)	69, 281
NspI	RCATGY	1 cut(s)	127
OliI	CACNNNNGTG	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	299
Pfl23II	CGTACG	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	24, 228
PspEI	GGTNACC	2 cut(s)	69, 281
PspGI	CCWGG	2 cut(s)	24, 228
PspLI	CGTACG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	62, 189
PspPI	GGNCC	2 cut(s)	60, 150
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	194
Sau3AI	GATC	6 cut(s)	42, 95, 204, 210, 261, 265
Sau96I	GGNCC	2 cut(s)	60, 150
ScrFI	CCNGG	2 cut(s)	26, 230
SetI	ASST	3 cut(s)	133, 288, 310
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	76
Sse9I	AATT	3 cut(s)	289, 321, 346
SsiI	CCGC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	24, 228
StyI	CCWWGG	3 cut(s)	15, 146, 339
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	94, 264
TasI	AATT	3 cut(s)	289, 321, 346
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseFI	GTSAC	2 cut(s)	69, 281
Tsp45I	GTSAC	2 cut(s)	69, 281
TspDTI	ATGAA	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	2 cut(s)	321, 346
XceI	RCATGY	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.