Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015221

Physical Location & Seq

Genomic Coordinates Reverse (-)

46268951 .. 46270039

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009083

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAATTCTTTCCAATCACAGAGACAAGACTCGTTGAAAAGGAGGTGGCAAGAGATCAGGAGATCAAGTGCAACCACTCAACCTTCTTCTGATATGATCAGAAAACCTAATGGTGCTCTCAACGGCTTCCCAGGCCTTCTTGGTGATGATGATCTTGTTTCCATGTTGGTCCCTCCGGTGACTGTGGTGCTCGAAGGCCGCTCGATCTGCCAGCGCATCAGTCTCCAAAAGCAAACGAGCTACCAAAGTCTAGCCAAAGCCCTCCGGCAAATGTTTGTGGATGGCAGCGATGTTGGAGCTACTGCGGCCGATATTGACAGTAAGGATCTCGATCTTTCTAATGCCGTTCCGGGTCATGTTATTGCTTATGAAGACATGGAAAACGATCTCCTTCTTGCCGGAGACTTGAATTGGAAGGATTTCGTACGCGTTGCCAAGAGAATTCGAATACTTCCTGCCAAGGCAAACTCAAGGAGGGGAGGGAGAAGGAGCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

166

Amino Acids

18.26

Weight (kDa)

9.65

Isoelectric Point (pI)

66.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	60 - 152	2.8e-15	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57420
fragaria_vesca	FvH4_4g08200
malus_domestica	MD13G1253600.v1.1
prunus_persica	Prupe.1G085900_v2.0.a1
pyrus_communis	pycom13g22450
rosa_chinensis	RchiOBHm_Chr4g0402441
rosa_laevigata	RLG00000009083
rosa_multiflora	Rmu_ssc0000330.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347140
rosa_rugosa	Rorug04G0035400 Rorug04G0035500
rosa_samantha	Rh4AG112800 Rh4BG105300 Rh4CG119600 Rh4DG104600
rosa_wichuraiana	Rw4G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	201
AccII	CGCG	1 cut(s)	429
AciI	CCGC	2 cut(s)	199, 305
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	2 cut(s)	4, 441
AfaI	GTAC	1 cut(s)	426
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	37, 409
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	240, 299
AluI	AGCT	2 cut(s)	240, 299
Alw21I	GWGCWC	2 cut(s)	118, 192
Alw26I	GTCTC	3 cut(s)	16, 227, 396
AlwI	GGATC	1 cut(s)	333
AoxI	GGCC	3 cut(s)	133, 196, 306
ApeKI	GCWGC	1 cut(s)	285
ApoI	RAATTY	2 cut(s)	4, 441
Asp700I	GAANNNNTTC	2 cut(s)	8, 419
AspLEI	GCGC	2 cut(s)	216, 494
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	155, 190
AsuII	TTCGAA	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	2 cut(s)	118, 192
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	2 cut(s)	139, 329
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	3 cut(s)	16, 227, 396
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	3 cut(s)	199, 286, 306
BlsI	GCNGC	3 cut(s)	200, 287, 307
Bme1390I	CCNGG	2 cut(s)	132, 351
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	2 cut(s)	132, 351
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	351
BsaBI	GATNNNNATC	2 cut(s)	150, 330
BsaJI	CCNNGG	2 cut(s)	130, 459
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bse8I	GATNNNNATC	2 cut(s)	150, 330
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	130, 459
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	2 cut(s)	150, 330
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	135, 198, 308
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	118, 192
BsiSI	CCGG	4 cut(s)	176, 265, 350, 399
BsiWI	CGTACG	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	3 cut(s)	16, 227, 396
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	135, 198, 308
Bsp119I	TTCGAA	1 cut(s)	445
Bsp1286I	GDGCHC	2 cut(s)	118, 192
Bsp143I	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
BspACI	CCGC	2 cut(s)	199, 305
BspANI	GGCC	3 cut(s)	135, 198, 308
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	445
BsrBI	CCGCTC	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	130, 459
BssMI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	184, 320
BstBI	TTCGAA	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	429
BstHHI	GCGC	2 cut(s)	216, 494
BstKTI	GATC	8 cut(s)	57, 65, 99, 154, 207, 328, 334, 388
BstMAI	GTCTC	3 cut(s)	16, 227, 396
BstMBI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 207, 305
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	130, 349
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	297
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BstZI	CGGCCG	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	135, 198, 308
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	2 cut(s)	216, 494
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	3 cut(s)	163, 356, 376
CviJI	RGCY	8 cut(s)	126, 135, 198, 240, 254, 260, 299, 308
CviKI_1	RGCY	8 cut(s)	126, 135, 198, 240, 254, 260, 299, 308
CviQI	GTAC	1 cut(s)	425
DpnI	GATC	8 cut(s)	56, 64, 98, 153, 206, 327, 333, 387
DpnII	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
EaeI	YGGCCR	1 cut(s)	306
EagI	CGGCCG	1 cut(s)	306
EclXI	CGGCCG	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	459
Eco147I	AGGCCT	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	169
Eco52I	CGGCCG	1 cut(s)	306
EcoRI	GAATTC	2 cut(s)	4, 441
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	3 cut(s)	166, 359, 379
FaiI	YATR	6 cut(s)	95, 164, 357, 369, 377, 496
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	162, 355, 375
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	199, 286, 306
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	199, 286, 306
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	2 cut(s)	215, 493
GluI	GCNGC	3 cut(s)	199, 286, 306
HaeIII	GGCC	3 cut(s)	135, 198, 308
HapII	CCGG	4 cut(s)	176, 265, 350, 399
HhaI	GCGC	2 cut(s)	216, 494
Hin1II	CATG	3 cut(s)	166, 359, 379
Hin6I	GCGC	2 cut(s)	214, 492
HinP1I	GCGC	2 cut(s)	214, 492
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	4 cut(s)	176, 265, 350, 399
HphI	GGTGA	2 cut(s)	155, 190
Hpy188I	TCNGA	2 cut(s)	91, 101
Hpy188III	TCNNGA	2 cut(s)	58, 329
HpyAV	CCTTC	6 cut(s)	93, 146, 188, 401, 409, 480
HpyCH4III	ACNGT	2 cut(s)	184, 320
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 207, 305
Hsp92II	CATG	3 cut(s)	166, 359, 379
HspAI	GCGC	2 cut(s)	214, 492
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
LmnI	GCTCC	2 cut(s)	296, 489
LpnPI	CCDG	9 cut(s)	43, 117, 144, 189, 224, 278, 363, 412, 468
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	8 cut(s)	56, 64, 98, 153, 206, 327, 333, 387
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
MboII	GAAGA	2 cut(s)	78, 383
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	118, 192
MluCI	AATT	3 cut(s)	4, 409, 441
MluI	ACGCGT	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	5 cut(s)	36, 183, 272, 468, 473
MroXI	GAANNNNTTC	2 cut(s)	8, 419
MspI	CCGG	4 cut(s)	176, 265, 350, 399
MspR9I	CCNGG	2 cut(s)	132, 351
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	3 cut(s)	132, 207, 305
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
NlaIII	CATG	3 cut(s)	166, 359, 379
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	445
PceI	AGGCCT	1 cut(s)	135
PdmI	GAANNNNTTC	2 cut(s)	8, 419
Pfl23II	CGTACG	1 cut(s)	424
PkrI	GCNGC	3 cut(s)	200, 287, 307
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspLI	CGTACG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SatI	GCNGC	3 cut(s)	199, 286, 306
Sau3AI	GATC	8 cut(s)	54, 62, 96, 151, 204, 325, 331, 385
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	132, 351
SduI	GDGCHC	2 cut(s)	118, 192
SetI	ASST	5 cut(s)	47, 85, 109, 242, 301
SfaNI	GCATC	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	445
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	3 cut(s)	4, 409, 441
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	2 cut(s)	199, 305
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	130, 349
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	184, 320
TaqI	TCGA	4 cut(s)	192, 203, 330, 445
TasI	AATT	3 cut(s)	4, 409, 441
TauI	GCSGC	2 cut(s)	201, 308
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	285
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	17, 384
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	2 cut(s)	4, 441
XmnI	GAANNNNTTC	2 cut(s)	8, 419
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.