Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015221

Physical Location & Seq

Genomic Coordinates Forward (+)

8040852 .. 8042094

Gene Structure 1243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAATTATTTCCAGTCACAGAGACAAGACTCGTTGAAAAGGAGGTGGCAAGAGATCAGGAGATCAAGTGCAACCACTCAACCTTCTTCTGATATGATCACAAACCCTAACGGCGCTCTCAACTGCTTCCCAGGCCTTCTCGGTGATGATGATCTTGTTTCCACGTTGGTCCCTCCGGTGAATGTGGTGCTCGAAGGCCGCTCCATCTGCCAGCGCATCTGTCTCCAAAAGCATACGAGCTACACAAGTCTAGCCAAAGCCCTCAGGCAAATGTTTGTGGATGGCGGCGATGTTGGAGCTGCTACTGCGGCCGATATTGACAGTAAGGATCTCGATCTTTCAAATGCCGTTCCGGGTCATGTTATCGCTTATGAAGACATGGAGAATGATCTCCTTCTTGCCGGAGACCTGAATTGGAAGGATTTCGTACGCGTTGCGAAGAGAATTCGAATACTTCCAGCCAAGGCAAACTCAAGGAGGGGAGGAGGGAGAAGGAGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

168

Amino Acids

18.42

Weight (kDa)

8.88

Isoelectric Point (pI)

63.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	59 - 153	4.4e-15	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57420
fragaria_vesca	FvH4_4g08200
malus_domestica	MD13G1253600.v1.1
prunus_persica	Prupe.1G085900_v2.0.a1
pyrus_communis	pycom13g22450
rosa_chinensis	RchiOBHm_Chr4g0402441
rosa_laevigata	RLG00000009083
rosa_multiflora	Rmu_ssc0000330.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347140
rosa_rugosa	Rorug04G0035400 Rorug04G0035500
rosa_samantha	Rh4AG112800 Rh4BG105300 Rh4CG119600 Rh4DG104600
rosa_wichuraiana	Rw4G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	201
AccII	CGCG	1 cut(s)	432
AciI	CCGC	3 cut(s)	199, 285, 308
AclWI	GGATC	1 cut(s)	336
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	444
AfaI	GTAC	1 cut(s)	429
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	2 cut(s)	37, 342
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	240, 299
AluI	AGCT	2 cut(s)	240, 299
Alw21I	GWGCWC	2 cut(s)	192, 500
Alw26I	GTCTC	3 cut(s)	16, 227, 399
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	3 cut(s)	133, 196, 309
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	444
Asp700I	GAANNNNTTC	2 cut(s)	8, 422
AspLEI	GCGC	2 cut(s)	116, 216
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	2 cut(s)	155, 190
AsuII	TTCGAA	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	2 cut(s)	192, 500
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	212, 275
BceAI	ACGGC	2 cut(s)	127, 332
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	3 cut(s)	16, 227, 399
BfaI	CTAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	4 cut(s)	199, 286, 300, 309
BlsI	GCNGC	4 cut(s)	200, 287, 301, 310
Bme1390I	CCNGG	2 cut(s)	132, 354
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	2 cut(s)	132, 354
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	354
BsaBI	GATNNNNATC	2 cut(s)	150, 333
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	130, 462
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bse1I	ACTGG	1 cut(s)	13
Bse21I	CCTNAGG	1 cut(s)	263
Bse8I	GATNNNNATC	2 cut(s)	150, 333
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	130, 462
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	2 cut(s)	150, 333
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	498
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	432
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	135, 198, 311
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	2 cut(s)	192, 500
BsiSI	CCGG	3 cut(s)	176, 353, 402
BsiWI	CGTACG	1 cut(s)	427
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	3 cut(s)	16, 227, 399
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	135, 198, 311
Bso31I	GGTCTC	1 cut(s)	399
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	192, 500
Bsp143I	GATC	7 cut(s)	54, 62, 96, 151, 328, 334, 388
BspACI	CCGC	3 cut(s)	199, 285, 308
BspANI	GGCC	3 cut(s)	135, 198, 311
BspCNI	CTCAG	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	448
BspTNI	GGTCTC	1 cut(s)	399
BsrBI	CCGCTC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	130, 462
BssMI	GATC	7 cut(s)	54, 62, 96, 151, 328, 334, 388
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	434
BstBI	TTCGAA	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	263, 501
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	116, 216
BstKTI	GATC	7 cut(s)	57, 65, 99, 154, 331, 337, 391
BstMAI	GTCTC	3 cut(s)	16, 227, 399
BstMBI	GATC	7 cut(s)	54, 62, 96, 151, 328, 334, 388
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 207, 305, 308
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	130, 352
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BstZI	CGGCCG	1 cut(s)	309
Bsu36I	CCTNAGG	1 cut(s)	263
BsuRI	GGCC	3 cut(s)	135, 198, 311
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	2 cut(s)	116, 216
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	2 cut(s)	359, 379
CviJI	RGCY	8 cut(s)	135, 198, 240, 254, 260, 299, 311, 461
CviKI_1	RGCY	8 cut(s)	135, 198, 240, 254, 260, 299, 311, 461
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	2 cut(s)	263, 501
DpnI	GATC	7 cut(s)	56, 64, 98, 153, 330, 336, 390
DpnII	GATC	7 cut(s)	54, 62, 96, 151, 328, 334, 388
EaeI	YGGCCR	1 cut(s)	309
EagI	CGGCCG	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
EclXI	CGGCCG	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	169
Eco52I	CGGCCG	1 cut(s)	309
Eco81I	CCTNAGG	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	2 cut(s)	362, 382
FaiI	YATR	5 cut(s)	95, 234, 360, 372, 380
FalI	AAGNNNNNCTT	1 cut(s)	484
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	358, 378
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	4 cut(s)	199, 286, 300, 309
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	4 cut(s)	199, 286, 300, 309
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	2 cut(s)	115, 215
GluI	GCNGC	4 cut(s)	199, 286, 300, 309
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	135, 198, 311
HapII	CCGG	3 cut(s)	176, 353, 402
HhaI	GCGC	2 cut(s)	116, 216
Hin1II	CATG	2 cut(s)	362, 382
Hin6I	GCGC	2 cut(s)	114, 214
HinP1I	GCGC	2 cut(s)	114, 214
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	3 cut(s)	176, 353, 402
HphI	GGTGA	2 cut(s)	155, 190
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	58, 332
HpyAV	CCTTC	6 cut(s)	93, 146, 188, 404, 412, 486
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 207, 305, 308
HpyF3I	CTNAG	2 cut(s)	263, 501
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	362, 382
HspAI	GCGC	2 cut(s)	114, 214
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	7 cut(s)	54, 62, 96, 151, 328, 334, 388
LmnI	GCTCC	3 cut(s)	206, 296, 495
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	7 cut(s)	56, 64, 98, 153, 330, 336, 390
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	7 cut(s)	54, 62, 96, 151, 328, 334, 388
MboII	GAAGA	3 cut(s)	78, 386, 451
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	192, 500
MluCI	AATT	3 cut(s)	4, 412, 444
MluI	ACGCGT	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	36, 183, 272, 471, 476, 479
MroXI	GAANNNNTTC	2 cut(s)	8, 422
MspI	CCGG	3 cut(s)	176, 353, 402
MspR9I	CCNGG	2 cut(s)	132, 354
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	4 cut(s)	132, 207, 305, 308
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	7 cut(s)	54, 62, 96, 151, 328, 334, 388
NlaIII	CATG	2 cut(s)	362, 382
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	15
NspV	TTCGAA	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	135
PdmI	GAANNNNTTC	2 cut(s)	8, 422
Pfl23II	CGTACG	1 cut(s)	427
PkrI	GCNGC	4 cut(s)	200, 287, 301, 310
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspLI	CGTACG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SatI	GCNGC	4 cut(s)	199, 286, 300, 309
Sau3AI	GATC	7 cut(s)	54, 62, 96, 151, 328, 334, 388
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	132, 354
SduI	GDGCHC	2 cut(s)	192, 500
SetI	ASST	6 cut(s)	47, 85, 167, 242, 301, 411
SfaNI	GCATC	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	448
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
Sse9I	AATT	3 cut(s)	4, 412, 444
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	3 cut(s)	199, 285, 308
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	130, 352
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	192, 333, 448
TasI	AATT	3 cut(s)	4, 412, 444
TauI	GCSGC	3 cut(s)	201, 288, 311
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	2 cut(s)	17, 387
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	1 cut(s)	444
XmnI	GAANNNNTTC	2 cut(s)	8, 422
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.