Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015221

Physical Location & Seq

Genomic Coordinates Forward (+)

16106750 .. 16107178

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG104600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAACTCTTTCCAATCACAGAGACTAGAGTCACAAGACTCGTTGAAAAGGAGGTGGCAAGAGATCAGGAGATCAAGTGCAACCACTCAACCTTCTTCTGATATGATCAGAAAACCTAATGGTGCTCTCAACGGCTTCCCAGGCCTTCTTGGTGATGATGATCTTGTTTCCACGTTGGTCCCTCCGGTGACTGTGGTGCTCGAAGGCCGCTCGATCTGCCAGCGCATCAGTCTCCAAAAGCATACGAGCTACCAAAGTCTAGCCAAAGCCCTCCGGCAAATGTTTGTGGATGGCGGCGATGTTGGAGCTACTGCGGCCGATATTGACAGTAAGGATCTCGATCTTTCTAATGCCGTTCCGGGTCATGTTATTGCTTATGAAGACATGGAAAACGATCTCCTTCTTGCCGGAGACCTGAATTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

142

Amino Acids

15.6

Weight (kDa)

5.07

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	62 - 142	3.3e-10	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57420
fragaria_vesca	FvH4_4g08200
malus_domestica	MD13G1253600.v1.1
prunus_persica	Prupe.1G085900_v2.0.a1
pyrus_communis	pycom13g22450
rosa_chinensis	RchiOBHm_Chr4g0402441
rosa_laevigata	RLG00000009083
rosa_multiflora	Rmu_ssc0000330.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347140
rosa_rugosa	Rorug04G0035400 Rorug04G0035500
rosa_samantha	Rh4AG112800 Rh4BG105300 Rh4CG119600 Rh4DG104600
rosa_wichuraiana	Rw4G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	210
AciI	CCGC	3 cut(s)	208, 294, 314
AclWI	GGATC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	2 cut(s)	249, 308
AluI	AGCT	2 cut(s)	249, 308
Alw21I	GWGCWC	2 cut(s)	127, 201
Alw26I	GTCTC	3 cut(s)	16, 236, 405
AlwI	GGATC	1 cut(s)	342
AoxI	GGCC	3 cut(s)	142, 205, 315
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	164, 199
AvaII	GGWCC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	127, 201
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	2 cut(s)	148, 338
BciT130I	CCWGG	1 cut(s)	141
BclI	TGATCA	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	3 cut(s)	16, 236, 405
BfaI	CTAG	2 cut(s)	26, 260
BisI	GCNGC	3 cut(s)	208, 295, 315
BlsI	GCNGC	3 cut(s)	209, 296, 316
Bme1390I	CCNGG	2 cut(s)	141, 360
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	141, 360
BmsI	GCATC	1 cut(s)	234
BoxI	GACNNNNGTC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	360
BsaBI	GATNNNNATC	2 cut(s)	159, 339
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bse8I	GATNNNNATC	2 cut(s)	159, 339
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	295
BseJI	GATNNNNATC	2 cut(s)	159, 339
BseX3I	CGGCCG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	3 cut(s)	144, 207, 317
BsiEI	CGRYCG	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	127, 201
BsiSI	CCGG	4 cut(s)	185, 274, 359, 408
BslFI	GGGAC	1 cut(s)	164
BsmAI	GTCTC	3 cut(s)	16, 236, 405
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	144, 207, 317
Bso31I	GGTCTC	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	127, 201
Bsp143I	GATC	8 cut(s)	63, 71, 105, 160, 213, 334, 340, 394
BspACI	CCGC	3 cut(s)	208, 294, 314
BspANI	GGCC	3 cut(s)	144, 207, 317
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	342
BspTNI	GGTCTC	1 cut(s)	405
BsrBI	CCGCTC	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	8 cut(s)	63, 71, 105, 160, 213, 334, 340, 394
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	193, 329
BstC8I	GCNNGC	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	8 cut(s)	66, 74, 108, 163, 216, 337, 343, 397
BstMAI	GTCTC	3 cut(s)	16, 236, 405
BstMBI	GATC	8 cut(s)	63, 71, 105, 160, 213, 334, 340, 394
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 216, 314
BstNI	CCWGG	1 cut(s)	141
BstPAI	GACNNNNGTC	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	139, 358
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BstZI	CGGCCG	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	144, 207, 317
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	221
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	178
CviAII	CATG	2 cut(s)	365, 385
CviJI	RGCY	8 cut(s)	135, 144, 207, 249, 263, 269, 308, 317
CviKI_1	RGCY	8 cut(s)	135, 144, 207, 249, 263, 269, 308, 317
DpnI	GATC	8 cut(s)	65, 73, 107, 162, 215, 336, 342, 396
DpnII	GATC	8 cut(s)	63, 71, 105, 160, 213, 334, 340, 394
EaeI	YGGCCR	1 cut(s)	315
EagI	CGGCCG	1 cut(s)	315
EclXI	CGGCCG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	178
Eco52I	CGGCCG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	139
FaeI	CATG	2 cut(s)	368, 388
FaiI	YATR	5 cut(s)	104, 243, 366, 378, 386
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	2 cut(s)	364, 384
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	208, 295, 315
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	208, 295, 315
FspBI	CTAG	2 cut(s)	26, 260
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	3 cut(s)	208, 295, 315
HaeIII	GGCC	3 cut(s)	144, 207, 317
HapII	CCGG	4 cut(s)	185, 274, 359, 408
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	368, 388
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	29, 38
HpaII	CCGG	4 cut(s)	185, 274, 359, 408
HphI	GGTGA	2 cut(s)	164, 199
Hpy188I	TCNGA	2 cut(s)	100, 110
Hpy188III	TCNNGA	2 cut(s)	67, 338
HpyAV	CCTTC	4 cut(s)	102, 155, 197, 410
HpyCH4III	ACNGT	2 cut(s)	193, 329
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 216, 314
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	368, 388
HspAI	GCGC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	8 cut(s)	63, 71, 105, 160, 213, 334, 340, 394
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	8 cut(s)	52, 126, 153, 198, 233, 287, 372, 421
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	26, 260
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	30, 187
MalI	GATC	8 cut(s)	65, 73, 107, 162, 215, 336, 342, 396
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	8 cut(s)	63, 71, 105, 160, 213, 334, 340, 394
MboII	GAAGA	2 cut(s)	87, 392
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	127, 201
MluCI	AATT	1 cut(s)	418
MlyI	GAGTC	2 cut(s)	32, 38
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	3 cut(s)	45, 192, 281
MroXI	GAANNNNTTC	1 cut(s)	8
MspI	CCGG	4 cut(s)	185, 274, 359, 408
MspR9I	CCNGG	2 cut(s)	141, 360
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	141, 216, 314
NciI	CCSGG	1 cut(s)	360
NdeII	GATC	8 cut(s)	63, 71, 105, 160, 213, 334, 340, 394
NlaIII	CATG	2 cut(s)	368, 388
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	30, 187
PceI	AGGCCT	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	209, 296, 316
PleI	GAGTC	2 cut(s)	32, 37
PpsI	GAGTC	2 cut(s)	32, 37
PshAI	GACNNNNGTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	334
SatI	GCNGC	3 cut(s)	208, 295, 315
Sau3AI	GATC	8 cut(s)	63, 71, 105, 160, 213, 334, 340, 394
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	2 cut(s)	32, 38
ScrFI	CCNGG	2 cut(s)	141, 360
SduI	GDGCHC	2 cut(s)	127, 201
SetI	ASST	7 cut(s)	56, 94, 118, 176, 251, 310, 417
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	178
Sse9I	AATT	1 cut(s)	418
SseBI	AGGCCT	1 cut(s)	144
SsiI	CCGC	3 cut(s)	208, 294, 314
SspMI	CTAG	2 cut(s)	26, 260
StuI	AGGCCT	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	139, 358
TaaI	ACNGT	2 cut(s)	193, 329
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	201, 212, 339
TasI	AATT	1 cut(s)	418
TauI	GCSGC	3 cut(s)	210, 297, 317
TseFI	GTSAC	2 cut(s)	30, 187
Tsp45I	GTSAC	2 cut(s)	30, 187
TspDTI	ATGAA	2 cut(s)	17, 393
VpaK11BI	GGWCC	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	26, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.