Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015221

Physical Location & Seq

Genomic Coordinates Forward (+)

6379476 .. 6380776

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G085900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAATGCTTTTGAACCGCAGGGACAAGACTCCCTGAAAAGGAGGTGGCAGGAGAGGAGGCAGCAACTTGGTGGTGCAATTACTCCACCTTCTTCTCATTTGATCAGAAACCCTAACGGTGCTAGTCTCCACAGCTTCCCGGGACTTCTTGATGATGATCTCGTTTCCACGATGGTCCCTCCGGTCACCGTCGTTCTTGAAGGCCGTTCTATCTGCCAGCGCATTAGTCTCCAGAAGCATGCAAGTTACCAAAGTCTTGCCAAGGCCCTACGCCAAATGTTCGTGGATGGTAGCGATGTGGGGGCTGTTAATGACAAAGACCTTGATCTTTCAAATGCTGTTCCTGGTCATGTGATTGCTTATGAAGACATGGAAAATGATCTTCTTCTTGCCGGTGACCTTAATTGGAAGGATTTTGTACGCGTTGCCAAGAGAATTCGGATACTACCAGCCAAGGGAAATTCGAGGAGGGGAAGAAGGGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

163

Amino Acids

17.98

Weight (kDa)

9.24

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57420
fragaria_vesca	FvH4_4g08200
malus_domestica	MD13G1253600.v1.1
prunus_persica	Prupe.1G085900_v2.0.a1
pyrus_communis	pycom13g22450
rosa_chinensis	RchiOBHm_Chr4g0402441
rosa_laevigata	RLG00000009083
rosa_multiflora	Rmu_ssc0000330.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347140
rosa_rugosa	Rorug04G0035400 Rorug04G0035500
rosa_samantha	Rh4AG112800 Rh4BG105300 Rh4CG119600 Rh4DG104600
rosa_wichuraiana	Rw4G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	423
AciI	CCGC	1 cut(s)	17
AcsI	RAATTY	2 cut(s)	435, 460
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	39, 455
AflIII	ACRYGT	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	14, 200, 333
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	131, 233
Ama87I	CYCGRG	1 cut(s)	139
AoxI	GGCC	2 cut(s)	202, 264
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	2 cut(s)	435, 460
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	175, 265
AsuC2I	CCSGG	2 cut(s)	140, 141
AsuHPI	GGTGA	2 cut(s)	178, 407
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	166, 281
BceAI	ACGGC	1 cut(s)	189
BciT130I	CCWGG	1 cut(s)	345
BciVI	GTATCC	1 cut(s)	435
BclI	TGATCA	1 cut(s)	102
BcnI	CCSGG	2 cut(s)	140, 141
BcoDI	GTCTC	2 cut(s)	131, 233
BfaI	CTAG	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	3 cut(s)	140, 141, 345
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	175, 265
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	3 cut(s)	140, 141, 345
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	140, 141
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	139, 261, 453
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 455
Bse118I	RCCGGY	1 cut(s)	392
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	3 cut(s)	139, 261, 453
BseGI	GGATG	2 cut(s)	292, 487
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	39, 455
BseRI	GAGGAG	2 cut(s)	70, 481
BseXI	GCAGC	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	2 cut(s)	204, 266
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	3 cut(s)	140, 182, 393
BslFI	GGGAC	3 cut(s)	36, 156, 161
BslI	CCNNNNNNNGG	2 cut(s)	39, 455
BsmAI	GTCTC	2 cut(s)	131, 233
BsmFI	GGGAC	3 cut(s)	36, 156, 161
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	204, 266
BsoBI	CYCGRG	1 cut(s)	139
Bsp143I	GATC	4 cut(s)	102, 157, 325, 379
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	2 cut(s)	204, 266
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	392
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	139, 261, 453
BssMI	GATC	4 cut(s)	102, 157, 325, 379
BssT1I	CCWWGG	2 cut(s)	261, 453
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	119, 190
BstC8I	GCNNGC	2 cut(s)	218, 240
BstEII	GGTNACC	2 cut(s)	184, 395
BstF5I	GGATG	2 cut(s)	292, 487
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	4 cut(s)	105, 160, 328, 382
BstMAI	GTCTC	2 cut(s)	131, 233
BstMBI	GATC	4 cut(s)	102, 157, 325, 379
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	242
BstPI	GGTNACC	2 cut(s)	184, 395
BstSCI	CCNGG	3 cut(s)	138, 139, 343
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	204, 266
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	292, 487
Cac8I	GCNNGC	2 cut(s)	218, 240
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	175, 265
Cfr9I	CCCGGG	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	3 cut(s)	239, 350, 370
CviJI	RGCY	5 cut(s)	135, 204, 266, 305, 452
CviKI_1	RGCY	5 cut(s)	135, 204, 266, 305, 452
CviQI	GTAC	1 cut(s)	419
DpnI	GATC	4 cut(s)	104, 159, 327, 381
DpnII	GATC	4 cut(s)	102, 157, 325, 379
Eco130I	CCWWGG	2 cut(s)	261, 453
Eco47I	GGWCC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	139
Eco91I	GGTNACC	2 cut(s)	184, 395
EcoO109I	RGGNCCY	1 cut(s)	265
EcoO65I	GGTNACC	2 cut(s)	184, 395
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	261, 453
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	261, 453
FaeI	CATG	3 cut(s)	242, 353, 373
FaiI	YATR	5 cut(s)	240, 351, 363, 371, 487
FaqI	GGGAC	3 cut(s)	36, 156, 161
FatI	CATG	3 cut(s)	238, 349, 369
FbaI	TGATCA	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	62
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	204, 266
HapII	CCGG	3 cut(s)	140, 182, 393
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	242, 353, 373
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	3 cut(s)	140, 182, 393
HphI	GGTGA	2 cut(s)	178, 407
Hpy188I	TCNGA	2 cut(s)	107, 441
Hpy188III	TCNNGA	3 cut(s)	149, 197, 232
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	99, 194, 403, 471
HpyCH4III	ACNGT	2 cut(s)	119, 190
HpyCH4V	TGCA	3 cut(s)	77, 242, 485
Hsp92II	CATG	3 cut(s)	242, 353, 373
HspAI	GCGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	102, 157, 325, 379
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	184, 245, 395
MalI	GATC	4 cut(s)	104, 159, 327, 381
MboI	GATC	4 cut(s)	102, 157, 325, 379
MboII	GAAGA	5 cut(s)	84, 374, 377, 377, 486
MluCI	AATT	4 cut(s)	78, 403, 435, 460
MluI	ACGCGT	1 cut(s)	421
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	6 cut(s)	36, 48, 51, 189, 459, 462
Mph1103I	ATGCAT	1 cut(s)	487
MseI	TTAA	2 cut(s)	309, 402
MspI	CCGG	3 cut(s)	140, 182, 393
MspR9I	CCNGG	3 cut(s)	140, 141, 345
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	423
NciI	CCSGG	2 cut(s)	140, 141
NdeII	GATC	4 cut(s)	102, 157, 325, 379
NlaIII	CATG	3 cut(s)	242, 353, 373
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	184, 395
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	242
PctI	GAATGC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	343
PspEI	GGTNACC	2 cut(s)	184, 395
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	175, 265
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	309, 402
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	4 cut(s)	102, 157, 325, 379
Sau96I	GGNCC	2 cut(s)	175, 265
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	3 cut(s)	140, 141, 345
SetI	ASST	5 cut(s)	47, 91, 137, 324, 402
SfaNI	GCATC	1 cut(s)	472
SinI	GGWCC	1 cut(s)	175
SmaI	CCCGGG	1 cut(s)	141
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	4 cut(s)	78, 403, 435, 460
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	3 cut(s)	138, 139, 343
StyI	CCWWGG	2 cut(s)	261, 453
TaaI	ACNGT	2 cut(s)	119, 190
TaqI	TCGA	1 cut(s)	464
TasI	AATT	4 cut(s)	78, 403, 435, 460
Tru1I	TTAA	2 cut(s)	309, 402
Tru9I	TTAA	2 cut(s)	309, 402
TseFI	GTSAC	2 cut(s)	184, 395
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	2 cut(s)	184, 395
TspDTI	ATGAA	2 cut(s)	17, 378
TspMI	CCCGGG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	2 cut(s)	435, 460
XceI	RCATGY	1 cut(s)	242
XmaI	CCCGGG	1 cut(s)	139
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.