Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015221

Physical Location & Seq

Genomic Coordinates Forward (+)

5270543 .. 5271891

Gene Structure 1349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTTGTCATTTAAGATGGATTTGATCTGGGTTTTTTCCTTGGTTTTTCTTTATCTTGGGGTGTTCTCATTTGGGTCTAGTAATAATCTTTCTTCAAGACCGGCTGTTGTCAACATTGGAGCTCTTTTCACGTATGACTCTACGATTGGTAAGGTTGCCAAGATTGCTATTGAGGAAGCAGTAAAAGATGTCAACTCCAATTTTAGCATTCTCCATGGGACCAAACTTGTTGCGAAATTTCAGAATACCAATTGCAGTGGGTTTATTGGAATGGTTGAAGCTTTGCAATTCATGGAGACTGATATCGTTGCCATTATAGGCCCACAATCTTCTGTGGTTGCCCATATTGTATCCCACATTGCAAATGAACTCCAAGTACCACTATTGTCATTTGCAGCCACAGACCCAACTCTCTTAACCCTTCAGTTCCCATATTTTATTAAGACAACACAAAGTGATTTGTATCAAATGACTGCAGTTGCTCAAATTGTTGATCATTATGGTTGGAGAGAGGTTATTGCCATTTTTGCAGATGATGATTATGAGCGTAATGGCATATCAGCTTTAGATGATAAACTTGCTGAAAGGCGCTGTAAAATTTCCTATAAGTTGGCAATTCCCCCAGGACCAGCAGCTAATCGGAGTGCCATCATGGATATGCTTATTAAGGTTGCCTTATTGGAATCTCGCGTTATAGTTCTTCATGTGAATCCTGATTCAGGTTTCATGGTTCTTGCTGTGGCACAGTATCTTAAAATGATATTTCTCACTTATGCTTTACAGGTCTTTGATGCTGCAATTGGCGACATTGCCATTGTTACAAATCGAACGAAGATGGTGGATTTTACACAGCCATATGCTGCATCTGGACTTGTTGTAGTGGCCCCCTTTAAAAAATTGAACTCTGGTGCTTGGACCTTCCTTCGACCATTTACTGCACACATGTGGATAGTCACTGCTGCTTCCTTTTTTGTTGTTGGTATAGTTGTATGGATTTTGGAGCATAGGATAAATGATGAATTCAGGGGTCCACCAAAGAAGCAACTTATAGCCATCTTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

354

Amino Acids

39.24

Weight (kDa)

6.66

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	47 - 210	7.1e-08	Periplasmic binding protein
ANF_receptor	PF01094	54 - 276	1.7e-56	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57420
fragaria_vesca	FvH4_4g08200
malus_domestica	MD13G1253600.v1.1
prunus_persica	Prupe.1G085900_v2.0.a1
pyrus_communis	pycom13g22450
rosa_chinensis	RchiOBHm_Chr4g0402441
rosa_laevigata	RLG00000009083
rosa_multiflora	Rmu_ssc0000330.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347140
rosa_rugosa	Rorug04G0035400 Rorug04G0035500
rosa_samantha	Rh4AG112800 Rh4BG105300 Rh4CG119600 Rh4DG104600
rosa_wichuraiana	Rw4G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1059
AccII	CGCG	1 cut(s)	690
AcsI	RAATTY	3 cut(s)	236, 597, 1019
AcuI	CTGAAG	1 cut(s)	407
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	2 cut(s)	719, 1059
AflIII	ACRYGT	1 cut(s)	942
AgsI	TTSAA	3 cut(s)	96, 278, 901
AjnI	CCWGG	1 cut(s)	622
AleI	CACNNNNGTG	1 cut(s)	943
AluBI	AGCT	4 cut(s)	122, 281, 563, 635
AluI	AGCT	4 cut(s)	122, 281, 563, 635
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	319, 882
ApeKI	GCWGC	5 cut(s)	395, 632, 794, 860, 959
ApoI	RAATTY	3 cut(s)	236, 597, 1019
AspLEI	GCGC	1 cut(s)	591
AspS9I	GGNCC	6 cut(s)	219, 320, 626, 883, 915, 1028
AvaII	GGWCC	4 cut(s)	219, 626, 915, 1028
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	5 cut(s)	407, 644, 781, 847, 946
BccI	CCATC	4 cut(s)	10, 656, 829, 1061
BciT130I	CCWGG	1 cut(s)	624
BciVI	GTATCC	1 cut(s)	361
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	5 cut(s)	396, 633, 795, 861, 960
BlsI	GCNGC	5 cut(s)	397, 634, 796, 862, 961
Bme1390I	CCNGG	1 cut(s)	624
Bme18I	GGWCC	4 cut(s)	219, 626, 915, 1028
BmgT120I	GGNCC	6 cut(s)	219, 320, 626, 883, 915, 1028
BmiI	GGNNCC	3 cut(s)	220, 885, 1029
BmrFI	CCNGG	1 cut(s)	624
BmsI	GCATC	2 cut(s)	781, 872
BsaAI	YACGTR	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	3 cut(s)	39, 214, 622
Bsc4I	CCNNNNNNNGG	2 cut(s)	719, 1059
Bse118I	RCCGGY	1 cut(s)	100
Bse3DI	GCAATG	2 cut(s)	357, 807
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	3 cut(s)	39, 214, 622
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	719, 1059
BseMI	GCAATG	2 cut(s)	357, 807
BseXI	GCAGC	5 cut(s)	407, 644, 781, 847, 946
BsgI	GTGCAG	1 cut(s)	921
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	2 cut(s)	321, 884
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	719, 1059
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	321, 884
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	24, 493
Bsp19I	CCATGG	1 cut(s)	214
BspANI	GGCC	2 cut(s)	321, 884
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	3 cut(s)	220, 885, 1029
BspMAI	CTGCAG	1 cut(s)	478
BsrDI	GCAATG	2 cut(s)	357, 807
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	39, 214, 622
BssMI	GATC	2 cut(s)	24, 493
BssT1I	CCWWGG	2 cut(s)	39, 214
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	1 cut(s)	747
BstBAI	YACGTR	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	214
BstENI	CCTNNNNNAGG	1 cut(s)	717
BstFNI	CGCG	1 cut(s)	690
BstH2I	RGCGCY	1 cut(s)	592
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	2 cut(s)	27, 496
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	2 cut(s)	24, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 527
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	1 cut(s)	622
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	5 cut(s)	407, 644, 781, 847, 946
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	321, 884
BtgI	CCRYGG	1 cut(s)	214
BtsI	GCAGTG	2 cut(s)	262, 954
BtsIMutI	CAGTG	2 cut(s)	262, 954
CfoI	GCGC	1 cut(s)	591
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	6 cut(s)	219, 320, 626, 883, 915, 1028
Csp6I	GTAC	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	6 cut(s)	215, 292, 652, 704, 727, 943
CviQI	GTAC	1 cut(s)	377
DpnI	GATC	2 cut(s)	26, 495
DpnII	GATC	2 cut(s)	24, 493
DraI	TTTAAA	1 cut(s)	892
DraIII	CACNNNGTG	1 cut(s)	455
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	39, 214
Eco24I	GRGCYC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	4 cut(s)	219, 626, 915, 1028
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	122
EcoNI	CCTNNNNNAGG	1 cut(s)	717
EcoRI	GAATTC	1 cut(s)	1019
EcoRII	CCWGG	1 cut(s)	622
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	39, 214
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	2 cut(s)	39, 214
FaeI	CATG	6 cut(s)	218, 295, 655, 707, 730, 946
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	6 cut(s)	214, 291, 651, 703, 726, 942
FauNDI	CATATG	1 cut(s)	856
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	5 cut(s)	396, 633, 795, 861, 960
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	5 cut(s)	396, 633, 795, 861, 960
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	5 cut(s)	396, 633, 795, 861, 960
HaeII	RGCGCY	1 cut(s)	592
HaeIII	GGCC	2 cut(s)	321, 884
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	1 cut(s)	591
Hin1II	CATG	6 cut(s)	218, 295, 655, 707, 730, 946
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HincII	GTYRAC	2 cut(s)	112, 193
HindII	GTYRAC	2 cut(s)	112, 193
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	4 cut(s)	137, 683, 709, 716
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	3 cut(s)	112, 193, 1031
Hpy188I	TCNGA	2 cut(s)	243, 642
Hpy188III	TCNNGA	3 cut(s)	96, 713, 867
Hpy8I	GTNNAC	3 cut(s)	112, 193, 1031
HpyAV	CCTTC	3 cut(s)	431, 928, 932
HpyCH4III	ACNGT	1 cut(s)	747
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	9 cut(s)	255, 286, 362, 395, 476, 530, 797, 863, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 527
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	6 cut(s)	218, 295, 655, 707, 730, 946
HspAI	GCGC	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	24, 493
LmnI	GCTCC	2 cut(s)	119, 1000
Lsp1109I	GCAGC	5 cut(s)	407, 644, 781, 847, 946
LweI	GCATC	2 cut(s)	781, 872
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	817, 952
MalI	GATC	2 cut(s)	26, 495
MboI	GATC	2 cut(s)	24, 493
MboII	GAAGA	4 cut(s)	84, 321, 692, 844
MfeI	CAATTG	2 cut(s)	250, 798
MhlI	GDGCHC	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	2 cut(s)	166, 505
MseI	TTAA	6 cut(s)	12, 416, 441, 666, 753, 891
MslI	CAYNNNNRTG	2 cut(s)	656, 943
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	624
MunI	CAATTG	2 cut(s)	250, 798
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	164, 527
NcoI	CCATGG	1 cut(s)	214
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	2 cut(s)	24, 493
NlaIII	CATG	6 cut(s)	218, 295, 655, 707, 730, 946
NlaIV	GGNNCC	3 cut(s)	220, 885, 1029
NmuCI	GTSAC	1 cut(s)	952
NspI	RCATGY	1 cut(s)	946
OliI	CACNNNNGTG	1 cut(s)	943
PciI	ACATGT	1 cut(s)	942
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	683, 709, 716
PflMI	CCANNNNNTGG	1 cut(s)	1059
PkrI	GCNGC	5 cut(s)	397, 634, 796, 862, 961
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Ppu21I	YACGTR	1 cut(s)	132
PscI	ACATGT	1 cut(s)	942
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	3 cut(s)	220, 885, 1029
PspPI	GGNCC	6 cut(s)	219, 320, 626, 883, 915, 1028
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PstI	CTGCAG	1 cut(s)	478
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	2 cut(s)	656, 943
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	6 cut(s)	12, 416, 441, 666, 753, 891
SatI	GCNGC	5 cut(s)	396, 633, 795, 861, 960
Sau3AI	GATC	2 cut(s)	24, 493
Sau96I	GGNCC	6 cut(s)	219, 320, 626, 883, 915, 1028
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	2 cut(s)	781, 872
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	4 cut(s)	219, 626, 915, 1028
SmiMI	CAYNNNNRTG	2 cut(s)	656, 943
SspMI	CTAG	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	622
StyI	CCWWGG	2 cut(s)	39, 214
TaaI	ACNGT	1 cut(s)	747
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	826, 925
TfiI	GAWTC	3 cut(s)	683, 709, 716
Tru1I	TTAA	6 cut(s)	12, 416, 441, 666, 753, 891
Tru9I	TTAA	6 cut(s)	12, 416, 441, 666, 753, 891
TscAI	CASTG	2 cut(s)	262, 961
TseFI	GTSAC	1 cut(s)	952
TseI	GCWGC	5 cut(s)	395, 632, 794, 860, 959
Tsp45I	GTSAC	1 cut(s)	952
TspDTI	ATGAA	5 cut(s)	280, 381, 692, 715, 1032
TspRI	CASTG	2 cut(s)	262, 961
Van91I	CCANNNNNTGG	1 cut(s)	1059
VpaK11BI	GGWCC	4 cut(s)	219, 626, 915, 1028
XagI	CCTNNNNNAGG	1 cut(s)	717
XapI	RAATTY	3 cut(s)	236, 597, 1019
XceI	RCATGY	1 cut(s)	946
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.