Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015221

Physical Location & Seq

Genomic Coordinates Forward (+)

27267886 .. 27268744

Gene Structure 859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1253600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAATGCTTTTGATCAATCTCAGAGACAAGACTCCTTGAAAAGAAGATGGCAAGAGAGCAGAGTACAGCTTGGTGGTGGTGGTGCAATTACTCCAACTTCTTCTCATTTGAACAGAAACCCTAATGGCAGTAGTCTCCATGGCTTCCCAGGACTTCTTGACGACGATCTTGTTTCCACCGTGGTCCCTCCGGTCACCGTTGTGCTTGAAGGCCGTTCGATCTGCCAGCGCATTTGCCTCCAGAAACATGCAAGCTACCAAAGTCTTGCCAAGGCCCTCCGACAGATGTTCGTGGATAGTGGCGATGTGGGAACCATTAACGAGAAGGATCTTGATCTTTCAAATGCTGTTCCTGGTCATGTTATTGCTTATGAAGACATGGAAGATGATCTTCTTCTTGCCGGTGACCTCAATTGGAAGGATTTTGTACGTGTTGCGAAGAGAATTCGGATACTCCCAGCCAAGGGAAATTCAAGGAGGGGAAGAAGGGGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

166

Amino Acids

18.21

Weight (kDa)

9.06

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	65 - 153	9e-14	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57420
fragaria_vesca	FvH4_4g08200
malus_domestica	MD13G1253600.v1.1
prunus_persica	Prupe.1G085900_v2.0.a1
pyrus_communis	pycom13g22450
rosa_chinensis	RchiOBHm_Chr4g0402441
rosa_laevigata	RLG00000009083
rosa_multiflora	Rmu_ssc0000330.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347140
rosa_rugosa	Rorug04G0035400 Rorug04G0035500
rosa_samantha	Rh4AG112800 Rh4BG105300 Rh4CG119600 Rh4DG104600
rosa_wichuraiana	Rw4G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	2 cut(s)	444, 469
AfaI	GTAC	2 cut(s)	66, 429
AfiI	CCNNNNNNNGG	2 cut(s)	463, 464
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	5 cut(s)	40, 112, 209, 342, 474
AjnI	CCWGG	2 cut(s)	148, 352
AleI	CACNNNNGTG	1 cut(s)	200
AluBI	AGCT	2 cut(s)	70, 255
AluI	AGCT	2 cut(s)	70, 255
Alw26I	GTCTC	2 cut(s)	19, 140
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	2 cut(s)	211, 273
ApoI	RAATTY	2 cut(s)	444, 469
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	184, 274
AsuHPI	GGTGA	2 cut(s)	187, 416
AvaII	GGWCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	381
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	150, 354
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	2 cut(s)	19, 140
BfuI	GTATCC	1 cut(s)	444
Bme1390I	CCNGG	2 cut(s)	150, 354
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	184, 274
BmiI	GGNNCC	2 cut(s)	186, 313
BmrFI	CCNGG	2 cut(s)	150, 354
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	431
BsaBI	GATNNNNATC	1 cut(s)	333
BsaJI	CCNNGG	5 cut(s)	139, 148, 180, 270, 462
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 464
Bse118I	RCCGGY	1 cut(s)	401
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	150, 354
BseDI	CCNNGG	5 cut(s)	139, 148, 180, 270, 462
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	463, 464
BseMII	CTCAG	1 cut(s)	35
BseYI	CCCAGC	1 cut(s)	457
BshFI	GGCC	2 cut(s)	213, 275
BsiSI	CCGG	2 cut(s)	191, 402
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	463, 464
BsmAI	GTCTC	2 cut(s)	19, 140
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	213, 275
Bsp143I	GATC	6 cut(s)	13, 166, 219, 328, 334, 388
Bsp19I	CCATGG	1 cut(s)	139
BspANI	GGCC	2 cut(s)	213, 275
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	186, 313
BspPI	GGATC	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	5 cut(s)	139, 148, 180, 270, 462
BssMI	GATC	6 cut(s)	13, 166, 219, 328, 334, 388
BssT1I	CCWWGG	3 cut(s)	139, 270, 462
Bst2UI	CCWGG	2 cut(s)	150, 354
Bst4CI	ACNGT	2 cut(s)	181, 199
Bst6I	CTCTTC	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	227, 253
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	2 cut(s)	139, 180
BstEII	GGTNACC	2 cut(s)	193, 404
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	6 cut(s)	16, 169, 222, 331, 337, 391
BstMAI	GTCTC	2 cut(s)	19, 140
BstMBI	GATC	6 cut(s)	13, 166, 219, 328, 334, 388
BstNI	CCWGG	2 cut(s)	150, 354
BstNSI	RCATGY	1 cut(s)	251
BstPI	GGTNACC	2 cut(s)	193, 404
BstSCI	CCNGG	2 cut(s)	148, 352
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	213, 275
BtgI	CCRYGG	2 cut(s)	139, 180
BtgZI	GCGATG	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	227, 253
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	184, 274
Csp6I	GTAC	2 cut(s)	65, 428
CviAII	CATG	4 cut(s)	140, 248, 359, 379
CviJI	RGCY	6 cut(s)	70, 144, 213, 255, 275, 461
CviKI_1	RGCY	6 cut(s)	70, 144, 213, 255, 275, 461
CviQI	GTAC	2 cut(s)	65, 428
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	6 cut(s)	15, 168, 221, 330, 336, 390
DpnII	GATC	6 cut(s)	13, 166, 219, 328, 334, 388
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	3 cut(s)	139, 270, 462
Eco47I	GGWCC	1 cut(s)	184
Eco91I	GGTNACC	2 cut(s)	193, 404
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	2 cut(s)	193, 404
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	2 cut(s)	148, 352
EcoT14I	CCWWGG	3 cut(s)	139, 270, 462
ErhI	CCWWGG	3 cut(s)	139, 270, 462
FaeI	CATG	4 cut(s)	143, 251, 362, 382
FaiI	YATR	6 cut(s)	141, 249, 360, 372, 380, 496
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	4 cut(s)	139, 247, 358, 378
FbaI	TGATCA	1 cut(s)	13
GlaI	GCGC	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	461
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	213, 275
HapII	CCGG	2 cut(s)	191, 402
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	4 cut(s)	143, 251, 362, 382
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	2 cut(s)	191, 402
HphI	GGTGA	2 cut(s)	187, 416
Hpy188I	TCNGA	3 cut(s)	24, 281, 450
Hpy188III	TCNNGA	3 cut(s)	158, 241, 332
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	4 cut(s)	203, 319, 412, 480
HpyCH4III	ACNGT	2 cut(s)	181, 199
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	2 cut(s)	86, 251
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	4 cut(s)	143, 251, 362, 382
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	6 cut(s)	13, 166, 219, 328, 334, 388
LpnPI	CCDG	9 cut(s)	135, 162, 204, 239, 254, 339, 366, 415, 471
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	2 cut(s)	193, 404
MalI	GATC	6 cut(s)	15, 168, 221, 330, 336, 390
MboI	GATC	6 cut(s)	13, 166, 219, 328, 334, 388
MboII	GAAGA	8 cut(s)	57, 93, 383, 386, 386, 395, 451, 495
MfeI	CAATTG	1 cut(s)	412
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	4 cut(s)	87, 412, 444, 469
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	2 cut(s)	119, 304
MnlI	CCTC	5 cut(s)	198, 248, 287, 419, 471
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	2 cut(s)	191, 402
MspR9I	CCNGG	2 cut(s)	150, 354
MunI	CAATTG	1 cut(s)	412
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	150, 354
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	6 cut(s)	13, 166, 219, 328, 334, 388
NlaIII	CATG	4 cut(s)	143, 251, 362, 382
NlaIV	GGNNCC	2 cut(s)	186, 313
NmuCI	GTSAC	2 cut(s)	193, 404
NspI	RCATGY	1 cut(s)	251
OliI	CACNNNNGTG	1 cut(s)	200
PctI	GAATGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	148, 352
PspEI	GGTNACC	2 cut(s)	193, 404
PspFI	CCCAGC	1 cut(s)	457
PspGI	CCWGG	2 cut(s)	148, 352
PspN4I	GGNNCC	2 cut(s)	186, 313
PspPI	GGNCC	2 cut(s)	184, 274
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	2 cut(s)	66, 429
RsaNI	GTAC	2 cut(s)	65, 428
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	6 cut(s)	13, 166, 219, 328, 334, 388
Sau96I	GGNCC	2 cut(s)	184, 274
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	150, 354
SetI	ASST	4 cut(s)	72, 257, 411, 433
SinI	GGWCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	4 cut(s)	87, 412, 444, 469
StyD4I	CCNGG	2 cut(s)	148, 352
StyI	CCWWGG	3 cut(s)	139, 270, 462
TaaI	ACNGT	2 cut(s)	181, 199
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	218
TasI	AATT	4 cut(s)	87, 412, 444, 469
TatI	WGTACW	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	193, 404
Tsp45I	GTSAC	2 cut(s)	193, 404
TspDTI	ATGAA	2 cut(s)	17, 387
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	444, 469
XceI	RCATGY	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.