Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009638

Physical Location & Seq

Genomic Coordinates Forward (+)

23355337 .. 23356989

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGGATTCGGCTTAGAGAGTATCAAATCAATCTCCGGCGGATGGGGCGCGGCGGCGCGTTCCTGTGACGCTTGTAAATCAGTTACCGCCGCCGTGTTCTGTCGAGTTGACTCAGCTTTCTTATGCATAGCATGTGACACAAGAATCCATTCCTTCACTCGCCACGAGCGCGTGTGGGTTTGTGAAGTTTGTGAACAAGCTCCCGCCGCCGTCACTTGCAAAGCCGACGCCGCCGCTCTTTGCGTCAGTTGTGATGCCGATATTCACTCTGCTAATCCTCTCGCTAGCCGTCACGAACGTGTCCCCGTCGAAACTTTCTTCGACTCAGCCGAAACCGCCGTCGCCAAAATCTCAGCTTCTTCGACTTTTGGTATCCTTGGCTCATCCACCACCGTTGATTTAACCGCTGTTCCGGTTATGGCTGATGATCTCGGTTTATGTCCGTGGTTACTTCCTAATGATTTCAACGAACCGGCTAAAATCGAAATCGGAACTGAAAACATGAAAGGTTCTTCTGACTTTATGTTTTCTGATTTCGATCGGCTTATTGATTTCGAGTTTCCGAATTCGTTCAATCATCATCAAAACAACGCCGGAGGAGATAGTCTTGTTCCGGTTCAGACGAAAACAGAGCCTCTCCCGTTAACTAACAATGATCATTGCTTCGATATTGATTTCTGCAGATCAAAGCTCTCTGCTTTCACTTACCCTTCTCAATCAGTCAGCCACAGTGTTTCGACTTCTTCTATTGAATACGGTGTAGTTCCTGACGGAAACACAAACAACTCTGTTAACCGGAGCACGATCACTAGCTCGACGACTGGTGGTGATCATCAAGCGAGCTCTATGGATAGAGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAACAGGAAATTTGAGAAGACGATTCGTTACGCTTCGAGGAAAGCTTATGCAGAGTCACGGCCAAGGATCAAAGGCCGGTTTGCGAAAAGAACAGAGACAGAAAACGACGACATTTTCCTTAGTCATGTTTATGCTTCAGCAGCACACGCACAGTACGGTGTCGTACCAACGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

355

Amino Acids

38.82

Weight (kDa)

6.01

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	20 - 58	5.9e-06	B-box zinc finger
zf-B_box	PF00643	57 - 103	1.5e-06	B-box zinc finger
CCT	PF06203	285 - 327	6.5e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57660
fragaria_vesca	FvH4_4g08980 FvH4_4g08980
malus_domestica	MD00G1017500.v1.1 MD07G1300100.v1.1 MD13G1263800.v1.1 MD16G1265000.v1.1
prunus_persica	Prupe.1G093900_v2.0.a1
pyrus_communis	pycom13g23870 pycom16g23480
rosa_chinensis	RchiOBHm_Chr4g0403841
rosa_laevigata	RLG00000008947
rosa_multiflora	Rmu_sc0005134.1_g000019
rosa_roxburghii	Rroxscaffold_5G00348440
rosa_rugosa	Rorug03G0265600 Rorug04G0045800 Rorug05G0458600
rosa_samantha	Rh4AG121100 Rh4BG114300 Rh4CG129600 Rh4DG114200
rosa_wichuraiana	Rw4G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	236
AccII	CGCG	3 cut(s)	50, 58, 171
AclI	AACGTT	1 cut(s)	1061
AclWI	GGATC	1 cut(s)	965
AcoI	YGGCCR	1 cut(s)	950
AcsI	RAATTY	2 cut(s)	565, 899
AcuI	CTGAAG	1 cut(s)	1011
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	3 cut(s)	875, 1046, 1056
AfiI	CCNNNNNNNGG	1 cut(s)	42
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	466, 574, 752
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	8 cut(s)	116, 200, 356, 691, 813, 843, 860, 935
AluI	AGCT	8 cut(s)	116, 200, 356, 691, 813, 843, 860, 935
Alw21I	GWGCWC	2 cut(s)	803, 845
Alw26I	GTCTC	1 cut(s)	980
AlwI	GGATC	1 cut(s)	965
AoxI	GGCC	2 cut(s)	950, 964
ApeKI	GCWGC	1 cut(s)	1031
ApoI	RAATTY	2 cut(s)	565, 899
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
Asp700I	GAANNNNTTC	2 cut(s)	148, 569
AspLEI	GCGC	3 cut(s)	50, 58, 171
AsuHPI	GGTGA	1 cut(s)	839
AsuNHI	GCTAGC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	845
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	914
Bbv12I	GWGCWC	2 cut(s)	803, 845
BbvI	GCAGC	1 cut(s)	1043
BccI	CCATC	1 cut(s)	36
BceAI	ACGGC	5 cut(s)	77, 194, 273, 323, 965
BciVI	GTATCC	1 cut(s)	383
BclI	TGATCA	2 cut(s)	655, 829
BcoDI	GTCTC	1 cut(s)	980
BfaI	CTAG	3 cut(s)	285, 810, 861
BfmI	CTRYAG	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	7 cut(s)	51, 54, 90, 207, 231, 234, 1032
BlsI	GCNGC	7 cut(s)	52, 55, 91, 208, 232, 235, 1033
BmsI	GCATC	1 cut(s)	244
BmtI	GCTAGC	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	914
BsaBI	GATNNNNATC	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	376, 443, 953
BsaWI	WCCGGW	3 cut(s)	412, 613, 795
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse118I	RCCGGY	2 cut(s)	472, 966
Bse1I	ACTGG	1 cut(s)	826
Bse3DI	GCAATG	1 cut(s)	658
Bse8I	GATNNNNATC	1 cut(s)	537
BseDI	CCNNGG	3 cut(s)	376, 443, 953
BseGI	GGATG	2 cut(s)	47, 383
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	3 cut(s)	126, 339, 366
BseNI	ACTGG	1 cut(s)	826
BseRI	GAGGAG	1 cut(s)	612
BseXI	GCAGC	1 cut(s)	1043
Bsh1236I	CGCG	3 cut(s)	50, 58, 171
Bsh1285I	CGRYCG	1 cut(s)	541
BshFI	GGCC	2 cut(s)	952, 966
BsiEI	CGRYCG	1 cut(s)	541
BsiHKAI	GWGCWC	2 cut(s)	803, 845
BsiSI	CCGG	7 cut(s)	36, 413, 473, 594, 614, 796, 967
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	980
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	952, 966
Bsp1286I	GDGCHC	2 cut(s)	803, 845
Bsp143I	GATC	7 cut(s)	427, 538, 655, 683, 804, 829, 957
BspANI	GGCC	2 cut(s)	952, 966
BspCNI	CTCAG	3 cut(s)	125, 338, 365
BspFNI	CGCG	3 cut(s)	50, 58, 171
BspMAI	CTGCAG	1 cut(s)	683
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	965
BsrBI	CCGCTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	658
BsrFI	RCCGGY	2 cut(s)	472, 966
BsrI	ACTGG	1 cut(s)	826
BssAI	RCCGGY	2 cut(s)	472, 966
BssECI	CCNNGG	3 cut(s)	376, 443, 953
BssMI	GATC	7 cut(s)	427, 538, 655, 683, 804, 829, 957
BssNI	GRCGYC	1 cut(s)	228
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	2 cut(s)	376, 953
Bst2BI	CACGAG	1 cut(s)	164
Bst4CI	ACNGT	5 cut(s)	394, 731, 758, 1044, 1049
Bst6I	CTCTTC	1 cut(s)	878
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	286, 841
BstDEI	CTNAG	5 cut(s)	13, 112, 325, 352, 1010
BstDSI	CCRYGG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	47, 383
BstFNI	CGCG	3 cut(s)	50, 58, 171
BstHHI	GCGC	3 cut(s)	50, 58, 171
BstKTI	GATC	7 cut(s)	430, 541, 658, 686, 807, 832, 960
BstMAI	GTCTC	1 cut(s)	980
BstMBI	GATC	7 cut(s)	427, 538, 655, 683, 804, 829, 957
BstMCI	CGRYCG	1 cut(s)	541
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 168, 206, 230, 335, 1031, 1037
BstNSI	RCATGY	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	679
BstUI	CGCG	3 cut(s)	50, 58, 171
BstV1I	GCAGC	1 cut(s)	1043
BstV2I	GAAGAC	1 cut(s)	914
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	2 cut(s)	952, 966
BtgI	CCRYGG	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	47, 383
BtsIMutI	CAGTG	1 cut(s)	736
Cac8I	GCNNGC	2 cut(s)	286, 841
CfoI	GCGC	3 cut(s)	50, 58, 171
Cfr10I	RCCGGY	2 cut(s)	472, 966
CseI	GACGC	3 cut(s)	77, 232, 236
Csp6I	GTAC	3 cut(s)	874, 1045, 1055
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	3 cut(s)	132, 502, 1016
CviQI	GTAC	3 cut(s)	874, 1045, 1055
DdeI	CTNAG	5 cut(s)	13, 112, 325, 352, 1010
DpnI	GATC	7 cut(s)	429, 540, 657, 685, 806, 831, 959
DpnII	GATC	7 cut(s)	427, 538, 655, 683, 804, 829, 957
EaeI	YGGCCR	1 cut(s)	950
Eam1104I	CTCTTC	1 cut(s)	878
EarI	CTCTTC	1 cut(s)	878
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	843
Eco130I	CCWWGG	2 cut(s)	376, 953
Eco24I	GRGCYC	1 cut(s)	845
Eco53kI	GAGCTC	1 cut(s)	843
Eco57I	CTGAAG	1 cut(s)	1011
EcoICRI	GAGCTC	1 cut(s)	843
EcoRI	GAATTC	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	376, 953
EcoT22I	ATGCAT	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	845
ErhI	CCWWGG	2 cut(s)	376, 953
FaeI	CATG	3 cut(s)	135, 505, 1019
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	3 cut(s)	131, 501, 1015
FauI	CCCGC	1 cut(s)	211
FbaI	TGATCA	2 cut(s)	655, 829
Fnu4HI	GCNGC	7 cut(s)	51, 54, 90, 207, 231, 234, 1032
FokI	GGATG	2 cut(s)	54, 370
FriOI	GRGCYC	1 cut(s)	845
Fsp4HI	GCNGC	7 cut(s)	51, 54, 90, 207, 231, 234, 1032
FspBI	CTAG	3 cut(s)	285, 810, 861
GlaI	GCGC	3 cut(s)	49, 57, 170
GluI	GCNGC	7 cut(s)	51, 54, 90, 207, 231, 234, 1032
HaeIII	GGCC	2 cut(s)	952, 966
HapII	CCGG	7 cut(s)	36, 413, 473, 594, 614, 796, 967
HgaI	GACGC	3 cut(s)	77, 232, 236
HhaI	GCGC	3 cut(s)	50, 58, 171
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	135, 505, 1019
Hin6I	GCGC	3 cut(s)	48, 56, 169
HinP1I	GCGC	3 cut(s)	48, 56, 169
HincII	GTYRAC	3 cut(s)	109, 645, 793
HindII	GTYRAC	3 cut(s)	109, 645, 793
HindIII	AAGCTT	1 cut(s)	933
HinfI	GANTC	6 cut(s)	6, 110, 144, 323, 913, 944
HpaI	GTTAAC	2 cut(s)	645, 793
HpaII	CCGG	7 cut(s)	36, 413, 473, 594, 614, 796, 967
HphI	GGTGA	1 cut(s)	839
Hpy166II	GTNNAC	4 cut(s)	109, 194, 645, 793
Hpy188I	TCNGA	6 cut(s)	491, 517, 532, 564, 621, 1067
Hpy188III	TCNNGA	2 cut(s)	293, 767
Hpy8I	GTNNAC	4 cut(s)	109, 194, 645, 793
Hpy99I	CGWCG	5 cut(s)	230, 311, 344, 820, 1001
HpyAV	CCTTC	2 cut(s)	163, 720
HpyCH4III	ACNGT	5 cut(s)	394, 731, 758, 1044, 1049
HpyCH4IV	ACGT	2 cut(s)	298, 1061
HpyCH4V	TGCA	4 cut(s)	126, 219, 681, 941
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 168, 206, 230, 335, 1031, 1037
HpyF3I	CTNAG	5 cut(s)	13, 112, 325, 352, 1010
HpySE526I	ACGT	2 cut(s)	298, 1061
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	135, 505, 1019
HspAI	GCGC	3 cut(s)	48, 56, 169
Ksp22I	TGATCA	2 cut(s)	655, 829
KspAI	GTTAAC	2 cut(s)	645, 793
Kzo9I	GATC	7 cut(s)	427, 538, 655, 683, 804, 829, 957
LmnI	GCTCC	2 cut(s)	205, 798
Lsp1109I	GCAGC	1 cut(s)	1043
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	3 cut(s)	285, 810, 861
MaeII	ACGT	2 cut(s)	298, 1061
MaeIII	GTNAC	8 cut(s)	65, 82, 134, 211, 290, 447, 917, 945
MalI	GATC	7 cut(s)	429, 540, 657, 685, 806, 831, 959
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	7 cut(s)	427, 538, 655, 683, 804, 829, 957
MboII	GAAGA	6 cut(s)	310, 351, 504, 735, 895, 919
MhlI	GDGCHC	2 cut(s)	803, 845
MluCI	AATT	2 cut(s)	565, 899
MlyI	GAGTC	3 cut(s)	104, 317, 953
MnlI	CCTC	5 cut(s)	288, 590, 645, 864, 921
Mph1103I	ATGCAT	1 cut(s)	128
MroXI	GAANNNNTTC	2 cut(s)	148, 569
MseI	TTAA	3 cut(s)	401, 644, 792
MslI	CAYNNNNRTG	2 cut(s)	297, 1020
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	7 cut(s)	36, 413, 473, 594, 614, 796, 967
MvnI	CGCG	3 cut(s)	50, 58, 171
MwoI	GCNNNNNNNGC	7 cut(s)	45, 168, 206, 230, 335, 1031, 1037
NdeII	GATC	7 cut(s)	427, 538, 655, 683, 804, 829, 957
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	3 cut(s)	135, 505, 1019
NmuCI	GTSAC	5 cut(s)	65, 134, 211, 290, 945
NsiI	ATGCAT	1 cut(s)	128
NspI	RCATGY	1 cut(s)	135
OliI	CACNNNNGTG	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PdmI	GAANNNNTTC	2 cut(s)	148, 569
PfeI	GAWTC	3 cut(s)	6, 144, 913
PkrI	GCNGC	7 cut(s)	52, 55, 91, 208, 232, 235, 1033
Ple19I	CGATCG	1 cut(s)	541
PleI	GAGTC	3 cut(s)	104, 317, 952
PpsI	GAGTC	3 cut(s)	104, 317, 952
Psp124BI	GAGCTC	1 cut(s)	845
Psp1406I	AACGTT	1 cut(s)	1061
PstI	CTGCAG	1 cut(s)	683
PvuI	CGATCG	1 cut(s)	541
RsaI	GTAC	3 cut(s)	875, 1046, 1056
RsaNI	GTAC	3 cut(s)	874, 1045, 1055
RseI	CAYNNNNRTG	2 cut(s)	297, 1020
SacI	GAGCTC	1 cut(s)	845
SaqAI	TTAA	3 cut(s)	401, 644, 792
SatI	GCNGC	7 cut(s)	51, 54, 90, 207, 231, 234, 1032
Sau3AI	GATC	7 cut(s)	427, 538, 655, 683, 804, 829, 957
SchI	GAGTC	3 cut(s)	104, 317, 953
SduI	GDGCHC	2 cut(s)	803, 845
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	679
SmiMI	CAYNNNNRTG	2 cut(s)	297, 1020
Sse9I	AATT	2 cut(s)	565, 899
SspMI	CTAG	3 cut(s)	285, 810, 861
SstI	GAGCTC	1 cut(s)	845
StyI	CCWWGG	2 cut(s)	376, 953
TaaI	ACNGT	5 cut(s)	394, 731, 758, 1044, 1049
TaiI	ACGT	2 cut(s)	301, 1064
TasI	AATT	2 cut(s)	565, 899
TauI	GCSGC	6 cut(s)	53, 56, 92, 209, 233, 236
TfiI	GAWTC	3 cut(s)	6, 144, 913
Tru1I	TTAA	3 cut(s)	401, 644, 792
Tru9I	TTAA	3 cut(s)	401, 644, 792
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	5 cut(s)	65, 134, 211, 290, 945
TseI	GCWGC	1 cut(s)	1031
Tsp45I	GTSAC	5 cut(s)	65, 134, 211, 290, 945
TspDTI	ATGAA	1 cut(s)	518
TspGWI	ACGGA	2 cut(s)	432, 786
TspRI	CASTG	1 cut(s)	736
XapI	RAATTY	2 cut(s)	565, 899
XceI	RCATGY	1 cut(s)	135
XmnI	GAANNNNTTC	2 cut(s)	148, 569
XspI	CTAG	3 cut(s)	285, 810, 861
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.