FvH4_4g08980

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
10078076 .. 10079592
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08980.t2

Sequence Viewer

Length: 1071 bp
ATGGGAATCCAATCCTGCTGGACCCTCCCGGGCCTCTCCCCCAAGCCCTGCGACACCTGCAAGTCGTCGCCGGCTGCAGTCTTCTGCCGCGCCGACTCCGCCTACCTCTGCCTGGCCTGCGACTCCAAGATCCACTGCGCCAACAAGCTCGCCTCGCGCCACCAGCGCGTCTGGATGTGTGAGGTCTGCGAGCAGGCCCCCGCCGCCGTCACGTGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGCGACGCCGACATCCACTCCGCCAATCCCCTCGCGCGCCGCCACGAGCGATTCCCCGTCGAGCCCTTCCTCGACTCCGCCGAGTCCATCGCCAAGTCCACCTCCTCCGCCTTCAACGACGCCGTTTCCACCATTAAAAACGACGACGCTGACTCTCTTCTCATTCCCAACCTCAATTTCACCTCCAAGTTCGTTGATGCCCTCGACATGAAGCCCGATATGTACTTCCCGGAAATGGAATCCTTACTCGAATTCGATTACCCGAACCCGATCCAGAACTCCAGCTTGGGTATGGATAGCGTGGTTCCGGTCCAACCCGACCCGATTCCGCCGGCTCCGGTCCTCCACCAACCCTCTCAGGAAAGTTGCTTCGATATTGACTTCTGTAGAAGCAAGCTGTCTTCGTCCTTCAGTTACCCAGCTCAATCAATCAGCCAAAGCGTCTCGTCGTCCTCCTTAGATGTGGGAGTTGTTCCCGATGGAAACTCATTCTCGGATATTTCTTATCCTTTCATTGCGAACGTGAACCAAAACGGCATGGACTCCGGCGTACCAGCTCCGGCGACGGTGAGTCAAGCGACACAGCTGACCGGAGTGGACCGGGAGGCGAGAGTGATGAGGTACAGAGAGAAGAGGAAGAACCGCACGTTCCAGAAGACAATCCGGTACGCGTCCCGGAAAGCCTACGCGGAAACCCGGCCTAGAATCAAAGGCCGGTTCGCGAAACGCAGCGAAAGCGAAACGGAGGTGATGGACCGGATCTTTAACTCGGCGCCGGGGAGTTATATCGCAGACGCGCAATACGGCGTCGTCCCGACGTTTTGA

Protein Analysis

357

Amino Acids

38.99

Weight (kDa)

5.63

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 56 - 101 4.5e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 1018
AccII CGCG 9 cut(s) 90, 157, 168, 281, 283, 917, 935, 968, 1043
AclWI GGATC 3 cut(s) 124, 511, 1013
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 640
AcvI CACGTG 2 cut(s) 213, 246
AcyI GRCGYC 5 cut(s) 225, 252, 366, 1019, 1053
AfaI GTAC 4 cut(s) 470, 798, 869, 914
AfiI CCNNNNNNNGG 2 cut(s) 112, 481
AflIII ACRYGT 1 cut(s) 915
AgsI TTSAA 1 cut(s) 361
AhdI GACNNNNNGTC 1 cut(s) 816
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 4 cut(s) 407, 439, 515, 547
AluBI AGCT 6 cut(s) 148, 531, 643, 668, 803, 832
AluI AGCT 6 cut(s) 148, 531, 643, 668, 803, 832
Alw26I GTCTC 1 cut(s) 694
AlwI GGATC 3 cut(s) 124, 511, 1013
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 6 cut(s) 31, 114, 195, 219, 944, 958
ApeKI GCWGC 2 cut(s) 74, 975
ApoI RAATTY 1 cut(s) 497
AspLEI GCGC 8 cut(s) 92, 140, 159, 168, 283, 285, 1021, 1045
AspS9I GGNCC 7 cut(s) 21, 31, 196, 556, 586, 844, 1000
AsuC2I CCSGG 7 cut(s) 29, 30, 476, 848, 922, 943, 1023
AsuHPI GGTGA 3 cut(s) 418, 826, 1006
AvaI CYCGRG 1 cut(s) 28
AvaII GGWCC 5 cut(s) 21, 556, 586, 844, 1000
BanI GGYRCC 1 cut(s) 1018
BanII GRGCYC 1 cut(s) 312
BauI CACGAG 1 cut(s) 290
BbrPI CACGTG 2 cut(s) 213, 246
BbsI GAAGAC 3 cut(s) 73, 639, 908
BbvI GCAGC 2 cut(s) 61, 987
BccI CCATC 3 cut(s) 341, 719, 991
BceAI ACGGC 4 cut(s) 191, 353, 796, 1066
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 7 cut(s) 29, 30, 476, 848, 922, 943, 1023
BcoDI GTCTC 1 cut(s) 694
BfaI CTAG 1 cut(s) 948
BfmI CTRYAG 2 cut(s) 75, 631
BfoI RGCGCY 1 cut(s) 1022
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 7 cut(s) 75, 88, 204, 228, 231, 286, 976
BlsI GCNGC 7 cut(s) 76, 89, 205, 229, 232, 287, 977
Bme1390I CCNGG 8 cut(s) 29, 30, 113, 476, 848, 922, 943, 1023
Bme18I GGWCC 5 cut(s) 21, 556, 586, 844, 1000
BmeRI GACNNNNNGTC 1 cut(s) 816
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 7 cut(s) 21, 31, 196, 556, 586, 844, 1000
BmiI GGNNCC 5 cut(s) 23, 198, 552, 582, 1020
BmrFI CCNGG 8 cut(s) 29, 30, 113, 476, 848, 922, 943, 1023
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 3 cut(s) 73, 639, 908
BpmI CTGGAG 1 cut(s) 511
BpuMI CCSGG 7 cut(s) 29, 30, 476, 848, 922, 943, 1023
BsaAI YACGTR 2 cut(s) 213, 246
BsaHI GRCGYC 5 cut(s) 225, 252, 366, 1019, 1053
BsaJI CCNNGG 2 cut(s) 28, 1022
BsaWI WCCGGW 5 cut(s) 553, 583, 836, 909, 1002
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 481
Bse118I RCCGGY 3 cut(s) 70, 577, 960
Bse3DI GCAATG 1 cut(s) 759
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 28, 1022
BseGI GGATG 2 cut(s) 180, 258
BseLI CCNNNNNNNGG 2 cut(s) 112, 481
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 1 cut(s) 617
BsePI GCGCGC 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 340
BseXI GCAGC 2 cut(s) 61, 987
BseYI CCCAGC 1 cut(s) 664
Bsh1236I CGCG 9 cut(s) 90, 157, 168, 281, 283, 917, 935, 968, 1043
BshFI GGCC 6 cut(s) 33, 116, 197, 221, 946, 960
BshNI GGYRCC 1 cut(s) 1018
BsiHKCI CYCGRG 1 cut(s) 28
BslFI GGGAC 2 cut(s) 904, 1043
BslI CCNNNNNNNGG 2 cut(s) 112, 481
BsmAI GTCTC 1 cut(s) 694
BsmBI CGTCTC 1 cut(s) 694
BsmFI GGGAC 2 cut(s) 904, 1043
BsnI GGCC 6 cut(s) 33, 116, 197, 221, 946, 960
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 129, 516, 1005
Bsp68I TCGCGA 1 cut(s) 968
BspANI GGCC 6 cut(s) 33, 116, 197, 221, 946, 960
BspCNI CTCAG 1 cut(s) 616
BspFNI CGCG 9 cut(s) 90, 157, 168, 281, 283, 917, 935, 968, 1043
BspLI GGNNCC 5 cut(s) 23, 198, 552, 582, 1020
BspMAI CTGCAG 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 3 cut(s) 124, 511, 1013
BspT107I GGYRCC 1 cut(s) 1018
BsrDI GCAATG 1 cut(s) 759
BsrFI RCCGGY 3 cut(s) 70, 577, 960
BssAI RCCGGY 3 cut(s) 70, 577, 960
BssECI CCNNGG 2 cut(s) 28, 1022
BssHII GCGCGC 1 cut(s) 281
BssMI GATC 3 cut(s) 129, 516, 1005
BssNI GRCGYC 5 cut(s) 225, 252, 366, 1019, 1053
BssSI CACGAG 1 cut(s) 290
Bst2BI CACGAG 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 2 cut(s) 408, 872
BstACI GRCGYC 5 cut(s) 225, 252, 366, 1019, 1053
BstBAI YACGTR 2 cut(s) 213, 246
BstC8I GCNNGC 8 cut(s) 72, 118, 150, 191, 195, 283, 579, 641
BstDEI CTNAG 2 cut(s) 603, 703
BstF5I GGATG 2 cut(s) 180, 258
BstFNI CGCG 9 cut(s) 90, 157, 168, 281, 283, 917, 935, 968, 1043
BstH2I RGCGCY 1 cut(s) 1022
BstHHI GCGC 8 cut(s) 92, 140, 159, 168, 283, 285, 1021, 1045
BstKTI GATC 3 cut(s) 132, 519, 1008
BstMAI GTCTC 1 cut(s) 694
BstMBI GATC 3 cut(s) 129, 516, 1005
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 8 cut(s) 27, 28, 111, 474, 846, 920, 941, 1021
BstSFI CTRYAG 2 cut(s) 75, 631
BstUI CGCG 9 cut(s) 90, 157, 168, 281, 283, 917, 935, 968, 1043
BstV1I GCAGC 2 cut(s) 61, 987
BstV2I GAAGAC 3 cut(s) 73, 639, 908
BstX2I RGATCY 2 cut(s) 129, 1005
BstYI RGATCY 2 cut(s) 129, 1005
BsuRI GGCC 6 cut(s) 33, 116, 197, 221, 946, 960
BtgZI GCGATG 1 cut(s) 319
BtsCI GGATG 2 cut(s) 180, 258
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
BtuMI TCGCGA 1 cut(s) 968
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 8 cut(s) 72, 118, 150, 191, 195, 283, 579, 641
CfoI GCGC 8 cut(s) 92, 140, 159, 168, 283, 285, 1021, 1045
Cfr10I RCCGGY 3 cut(s) 70, 577, 960
Cfr13I GGNCC 7 cut(s) 21, 31, 196, 556, 586, 844, 1000
Cfr9I CCCGGG 1 cut(s) 28
Csp6I GTAC 4 cut(s) 469, 797, 868, 913
CviAII CATG 2 cut(s) 454, 784
CviQI GTAC 4 cut(s) 469, 797, 868, 913
DdeI CTNAG 2 cut(s) 603, 703
DinI GGCGCC 1 cut(s) 1020
DpnI GATC 3 cut(s) 131, 518, 1007
DpnII GATC 3 cut(s) 129, 516, 1005
DriI GACNNNNNGTC 1 cut(s) 816
Eam1104I CTCTTC 2 cut(s) 408, 872
Eam1105I GACNNNNNGTC 1 cut(s) 816
EarI CTCTTC 2 cut(s) 408, 872
EciI GGCGGA 5 cut(s) 88, 256, 313, 343, 564
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 5 cut(s) 21, 556, 586, 844, 1000
Eco57I CTGAAG 1 cut(s) 640
Eco72I CACGTG 2 cut(s) 213, 246
Eco88I CYCGRG 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 312
EgeI GGCGCC 1 cut(s) 1020
EheI GGCGCC 1 cut(s) 1020
Esp3I CGTCTC 1 cut(s) 694
FaeI CATG 2 cut(s) 457, 787
FaiI YATR 5 cut(s) 455, 467, 539, 785, 1032
FaqI GGGAC 2 cut(s) 904, 1043
FatI CATG 2 cut(s) 453, 783
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 7 cut(s) 75, 88, 204, 228, 231, 286, 976
FokI GGATG 2 cut(s) 187, 245
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 7 cut(s) 75, 88, 204, 228, 231, 286, 976
FspBI CTAG 1 cut(s) 948
GlaI GCGC 8 cut(s) 91, 139, 158, 167, 282, 284, 1020, 1044
GluI GCNGC 7 cut(s) 75, 88, 204, 228, 231, 286, 976
GsaI CCCAGC 1 cut(s) 668
GsuI CTGGAG 1 cut(s) 511
HaeII RGCGCY 1 cut(s) 1022
HaeIII GGCC 6 cut(s) 33, 116, 197, 221, 946, 960
HhaI GCGC 8 cut(s) 92, 140, 159, 168, 283, 285, 1021, 1045
Hin1I GRCGYC 5 cut(s) 225, 252, 366, 1019, 1053
Hin1II CATG 2 cut(s) 457, 787
Hin6I GCGC 8 cut(s) 90, 138, 157, 166, 281, 283, 1019, 1043
HinP1I GCGC 8 cut(s) 90, 138, 157, 166, 281, 283, 1019, 1043
HphI GGTGA 3 cut(s) 418, 826, 1006
Hpy166II GTNNAC 3 cut(s) 345, 772, 844
Hpy188I TCNGA 1 cut(s) 742
Hpy188III TCNNGA 7 cut(s) 172, 520, 605, 722, 898, 967, 1060
Hpy8I GTNNAC 3 cut(s) 345, 772, 844
HpyAV CCTTC 3 cut(s) 322, 367, 664
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4IV ACGT 5 cut(s) 212, 245, 768, 893, 1064
HpyCH4V TGCA 3 cut(s) 60, 77, 216
HpyF3I CTNAG 2 cut(s) 603, 703
HpySE526I ACGT 5 cut(s) 212, 245, 768, 893, 1064
Hsp92I GRCGYC 5 cut(s) 225, 252, 366, 1019, 1053
Hsp92II CATG 2 cut(s) 457, 787
HspAI GCGC 8 cut(s) 90, 138, 157, 166, 281, 283, 1019, 1043
KasI GGCGCC 1 cut(s) 1018
KroI GCCGGC 2 cut(s) 70, 577
KroNI GCCGGC 2 cut(s) 72, 579
Kzo9I GATC 3 cut(s) 129, 516, 1005
LmnI GCTCC 2 cut(s) 586, 808
Lsp1109I GCAGC 2 cut(s) 61, 987
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 948
MaeII ACGT 5 cut(s) 212, 245, 768, 893, 1064
MaeIII GTNAC 3 cut(s) 208, 241, 659
MalI GATC 3 cut(s) 131, 518, 1007
MboI GATC 3 cut(s) 129, 516, 1005
MboII GAAGA 6 cut(s) 73, 395, 639, 889, 895, 913
MflI RGATCY 2 cut(s) 129, 1005
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 2 cut(s) 421, 497
MluI ACGCGT 1 cut(s) 915
Mly113I GGCGCC 1 cut(s) 1019
MlyI GAGTC 7 cut(s) 89, 116, 314, 338, 392, 782, 826
MmeI TCCRAC 1 cut(s) 583
MroNI GCCGGC 2 cut(s) 70, 577
MseI TTAA 2 cut(s) 381, 1011
MspA1I CMGCKG 1 cut(s) 832
MspR9I CCNGG 8 cut(s) 29, 30, 113, 476, 848, 922, 943, 1023
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 9 cut(s) 90, 157, 168, 281, 283, 917, 935, 968, 1043
NaeI GCCGGC 2 cut(s) 72, 579
NarI GGCGCC 1 cut(s) 1019
NciI CCSGG 7 cut(s) 29, 30, 476, 848, 922, 943, 1023
NdeII GATC 3 cut(s) 129, 516, 1005
NgoMIV GCCGGC 2 cut(s) 70, 577
NlaIII CATG 2 cut(s) 457, 787
NlaIV GGNNCC 5 cut(s) 23, 198, 552, 582, 1020
NmeAIII GCCGAG 2 cut(s) 352, 995
NmuCI GTSAC 2 cut(s) 208, 241
NruI TCGCGA 1 cut(s) 968
PaqCI CACCTGC 1 cut(s) 65
PauI GCGCGC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PdiI GCCGGC 2 cut(s) 72, 579
PfeI GAWTC 5 cut(s) 6, 297, 485, 571, 951
PfoI TCCNGGA 2 cut(s) 474, 920
PkrI GCNGC 7 cut(s) 76, 89, 205, 229, 232, 287, 977
PleI GAGTC 7 cut(s) 89, 116, 314, 337, 392, 782, 825
PluTI GGCGCC 1 cut(s) 1022
PmaCI CACGTG 2 cut(s) 213, 246
PmlI CACGTG 2 cut(s) 213, 246
PpsI GAGTC 7 cut(s) 89, 116, 314, 337, 392, 782, 825
Ppu21I YACGTR 2 cut(s) 213, 246
Psp6I CCWGG 1 cut(s) 111
PspCI CACGTG 2 cut(s) 213, 246
PspFI CCCAGC 1 cut(s) 664
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 5 cut(s) 23, 198, 552, 582, 1020
PspPI GGNCC 7 cut(s) 21, 31, 196, 556, 586, 844, 1000
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 2 cut(s) 129, 1005
PteI GCGCGC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 832
RruI TCGCGA 1 cut(s) 968
RsaI GTAC 4 cut(s) 470, 798, 869, 914
RsaNI GTAC 4 cut(s) 469, 797, 868, 913
SaqAI TTAA 2 cut(s) 381, 1011
SatI GCNGC 7 cut(s) 75, 88, 204, 228, 231, 286, 976
Sau3AI GATC 3 cut(s) 129, 516, 1005
Sau96I GGNCC 7 cut(s) 21, 31, 196, 556, 586, 844, 1000
SchI GAGTC 7 cut(s) 89, 116, 314, 338, 392, 782, 826
ScrFI CCNGG 8 cut(s) 29, 30, 113, 476, 848, 922, 943, 1023
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 2 cut(s) 75, 631
SfoI GGCGCC 1 cut(s) 1020
SinI GGWCC 5 cut(s) 21, 556, 586, 844, 1000
SmaI CCCGGG 1 cut(s) 30
Sse9I AATT 2 cut(s) 421, 497
SspDI GGCGCC 1 cut(s) 1018
SspMI CTAG 1 cut(s) 948
StyD4I CCNGG 8 cut(s) 27, 28, 111, 474, 846, 920, 941, 1021
TaaI ACNGT 1 cut(s) 814
TaiI ACGT 5 cut(s) 215, 248, 771, 896, 1067
TaqI TCGA 6 cut(s) 306, 318, 450, 495, 501, 618
TasI AATT 2 cut(s) 421, 497
TatI WGTACW 1 cut(s) 468
TauI GCSGC 5 cut(s) 90, 206, 230, 233, 288
TfiI GAWTC 5 cut(s) 6, 297, 485, 571, 951
Tru1I TTAA 2 cut(s) 381, 1011
Tru9I TTAA 2 cut(s) 381, 1011
TscAI CASTG 1 cut(s) 140
TseFI GTSAC 2 cut(s) 208, 241
TseI GCWGC 2 cut(s) 74, 975
Tsp45I GTSAC 2 cut(s) 208, 241
TspDTI ATGAA 2 cut(s) 470, 748
TspGWI ACGGA 1 cut(s) 1004
TspMI CCCGGG 1 cut(s) 28
TspRI CASTG 1 cut(s) 140
VpaK11BI GGWCC 5 cut(s) 21, 556, 586, 844, 1000
XapI RAATTY 1 cut(s) 497
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XmaI CCCGGG 1 cut(s) 28
XspI CTAG 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.