Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009638

Physical Location & Seq

Genomic Coordinates Forward (+)

7156286 .. 7158616

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0045800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGTCTCCGACAATTCAAGCAACCAAGACCGTCTCCAACAGCTCAAGGCCTTTGACGAATCCAAAGCTGGTGTCAAAGGGATCGTTGATGCGGGCATCACCAAAATCCCACCAATTTTTGTCCGGCCTCCGGCAGATTACGCCGGCGATGATCAAGTTTCCGGCGAGACAACCAAAACCCATTTCAGTATTCCGGTGGTGGACCTCGCTGACACTGCCAGCAGGCGACCGGAGGTGATCGACGGAGTGCGGCGGGCGGCGGAGAGCGTAGGGTTCTTCCAGGTGGTGAACCATGGGATACCCAAGAGAGTGTTGGAGGAGATGTTGGAGGCGGCGCGTGGGTTCCACGAGCTGCCGAGGGAAGCGAAGGCTGAGTACTATAGTAGGGAGCTGATGAGGAAAGTCAAGTTTGGGAGCAACTTTGATTTGTATCAGTCGAGATTTGCTAATTGGAGGGACAGCTTGTTTTGTGTCATGGGTCCTGACCCTCTTGATCCTCAAGAGTTGCCTCTGGTTTGCAGAGACATTACCATGGAGTATTCAGATCAAGTTCACAAACTAGGTGTGACGTTGTTTGAGTTGCTATCTGAGGCACTTGGGCTCAAACCGGACCACCTTTTAGAATTGGATTGTGCAAAGGGGCATCTTATTCTTAGTCACTACTATCCACCATGCCCTGAGCCTGAACTGACTTTGGGCACAACCAAACACTCTGATCCGGATTTTCTCACCATTCTACTTCAAGACCATATTGGTGGCCTCCAAGTTCTGTGTCAAAACCAATGGATTGATGTTCCTCCTGTTCCTGGAGCTTTAGTGGTCAACATTGGAGATCTATTGCAGCTTATATCCAATGACAGATTCAAAAGCGTAGAGCATCAAGTGCTTGCCAACCTCGAAGGACCAAGAGTATCTATTGCTTGCTTTTTCACCTTGCATCTTTATCCATCAACAAGGTTGTACGGCCCCATAAACGAATTGCTGTCAGAAAATCATCCCCCTGTATACAGAGAAACCTCACTTCAAGATTTCATTGCTTACTATGATGGAAAAGGGCTTGATGGGAACTCTGCACTAACACATTTCAAGTGCCAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

366

Amino Acids

41.01

Weight (kDa)

5.3

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	64 - 160	7.6e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 310	6.3e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57660
fragaria_vesca	FvH4_4g08980 FvH4_4g08980
malus_domestica	MD00G1017500.v1.1 MD07G1300100.v1.1 MD13G1263800.v1.1 MD16G1265000.v1.1
prunus_persica	Prupe.1G093900_v2.0.a1
pyrus_communis	pycom13g23870 pycom16g23480
rosa_chinensis	RchiOBHm_Chr4g0403841
rosa_laevigata	RLG00000008947
rosa_multiflora	Rmu_sc0005134.1_g000019
rosa_roxburghii	Rroxscaffold_5G00348440
rosa_rugosa	Rorug03G0265600 Rorug04G0045800 Rorug05G0458600
rosa_samantha	Rh4AG121100 Rh4BG114300 Rh4CG129600 Rh4DG114200
rosa_wichuraiana	Rw4G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1005
AccII	CGCG	1 cut(s)	337
AccIII	TCCGGA	1 cut(s)	718
AciI	CCGC	6 cut(s)	92, 250, 253, 257, 260, 332
AclWI	GGATC	3 cut(s)	89, 488, 710
AfaI	GTAC	2 cut(s)	377, 962
AfiI	CCNNNNNNNGG	2 cut(s)	130, 806
AgsI	TTSAA	5 cut(s)	18, 743, 865, 1025, 1087
AjnI	CCWGG	2 cut(s)	279, 805
AjuI	GAANNNNNNNTTGG	4 cut(s)	167, 199, 845, 877
AluBI	AGCT	7 cut(s)	43, 68, 352, 391, 462, 812, 844
AluI	AGCT	7 cut(s)	43, 68, 352, 391, 462, 812, 844
Alw26I	GTCTC	4 cut(s)	10, 38, 161, 516
AlwI	GGATC	3 cut(s)	89, 488, 710
Aor13HI	TCCGGA	1 cut(s)	718
AoxI	GGCC	4 cut(s)	48, 125, 757, 964
ApeKI	GCWGC	2 cut(s)	352, 841
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	5 cut(s)	202, 479, 610, 902, 965
AsuHPI	GGTGA	5 cut(s)	91, 247, 298, 721, 922
AvaII	GGWCC	4 cut(s)	202, 479, 610, 902
BaeGI	GKGCMC	1 cut(s)	701
BanII	GRGCYC	1 cut(s)	603
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BauI	CACGAG	1 cut(s)	347
BbvI	GCAGC	2 cut(s)	339, 853
BccI	CCATC	3 cut(s)	955, 1040, 1055
BceAI	ACGGC	1 cut(s)	979
BciT130I	CCWGG	2 cut(s)	281, 807
BciVI	GTATCC	1 cut(s)	291
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	4 cut(s)	10, 38, 161, 516
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	291
BglII	AGATCT	1 cut(s)	832
BisI	GCNGC	5 cut(s)	251, 258, 333, 353, 842
BlsI	GCNGC	5 cut(s)	252, 259, 334, 354, 843
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	2 cut(s)	281, 807
Bme18I	GGWCC	4 cut(s)	202, 479, 610, 902
BmgT120I	GGNCC	5 cut(s)	202, 479, 610, 902, 965
BmiI	GGNNCC	3 cut(s)	344, 480, 967
BmrFI	CCNGG	2 cut(s)	281, 807
BmsI	GCATC	5 cut(s)	79, 105, 652, 886, 946
BpmI	CTGGAG	1 cut(s)	828
Bpu10I	CCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	2 cut(s)	29, 483
BsaBI	GATNNNNATC	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	292, 356, 531
BsaWI	WCCGGW	4 cut(s)	193, 229, 607, 718
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 338, 801, 831
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 806
Bse118I	RCCGGY	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	1032
Bse8I	GATNNNNATC	1 cut(s)	429
BseAI	TCCGGA	1 cut(s)	718
BseBI	CCWGG	2 cut(s)	281, 807
BseDI	CCNNGG	3 cut(s)	292, 356, 531
BseGI	GGATG	1 cut(s)	994
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	130, 806
BseMI	GCAATG	1 cut(s)	1032
BseMII	CTCAG	3 cut(s)	363, 579, 669
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	701
BseXI	GCAGC	2 cut(s)	339, 853
BsgI	GTGCAG	1 cut(s)	1056
Bsh1236I	CGCG	1 cut(s)	337
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	4 cut(s)	50, 127, 759, 966
BsiEI	CGRYCG	1 cut(s)	230
BsiSI	CCGG	8 cut(s)	124, 131, 144, 162, 194, 230, 608, 719
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	130, 806
BsmAI	GTCTC	4 cut(s)	10, 38, 161, 516
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	4 cut(s)	50, 127, 759, 966
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	603, 701
Bsp13I	TCCGGA	1 cut(s)	718
Bsp143I	GATC	7 cut(s)	81, 151, 237, 493, 544, 715, 832
Bsp19I	CCATGG	2 cut(s)	292, 531
BspACI	CCGC	6 cut(s)	92, 250, 253, 257, 260, 332
BspANI	GGCC	4 cut(s)	50, 127, 759, 966
BspCNI	CTCAG	3 cut(s)	364, 580, 670
BspEI	TCCGGA	1 cut(s)	718
BspFNI	CGCG	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	344, 480, 967
BspPI	GGATC	3 cut(s)	89, 488, 710
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	1032
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	292, 356, 531
BssMI	GATC	7 cut(s)	81, 151, 237, 493, 544, 715, 832
BssNAI	GTATAC	1 cut(s)	1006
BssSI	CACGAG	1 cut(s)	347
BssT1I	CCWWGG	2 cut(s)	292, 531
Bst1107I	GTATAC	1 cut(s)	1006
Bst2BI	CACGAG	1 cut(s)	347
Bst2UI	CCWGG	2 cut(s)	281, 807
Bst4CI	ACNGT	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	883
BstC8I	GCNNGC	7 cut(s)	94, 145, 220, 224, 255, 888, 922
BstDEI	CTNAG	4 cut(s)	372, 588, 653, 678
BstDSI	CCRYGG	2 cut(s)	292, 531
BstF5I	GGATG	1 cut(s)	994
BstFNI	CGCG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	7 cut(s)	84, 154, 240, 496, 547, 718, 835
BstMAI	GTCTC	4 cut(s)	10, 38, 161, 516
BstMBI	GATC	7 cut(s)	81, 151, 237, 493, 544, 715, 832
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 215, 883
BstNI	CCWGG	2 cut(s)	281, 807
BstSCI	CCNGG	2 cut(s)	279, 805
BstSFI	CTRYAG	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	701
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	339, 853
BstX2I	RGATCY	1 cut(s)	832
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	832
BstZ17I	GTATAC	1 cut(s)	1006
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	4 cut(s)	50, 127, 759, 966
BtgI	CCRYGG	2 cut(s)	292, 531
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	994
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	7 cut(s)	94, 145, 220, 224, 255, 888, 922
CfoI	GCGC	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	5 cut(s)	202, 479, 610, 902, 965
Csp6I	GTAC	2 cut(s)	376, 961
CviAII	CATG	4 cut(s)	293, 475, 532, 672
CviQI	GTAC	2 cut(s)	376, 961
DdeI	CTNAG	4 cut(s)	372, 588, 653, 678
DpnI	GATC	7 cut(s)	83, 153, 239, 495, 546, 717, 834
DpnII	GATC	7 cut(s)	81, 151, 237, 493, 544, 715, 832
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	2 cut(s)	292, 531
Eco147I	AGGCCT	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	4 cut(s)	202, 479, 610, 902
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRII	CCWGG	2 cut(s)	279, 805
EcoT14I	CCWWGG	2 cut(s)	292, 531
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	2 cut(s)	292, 531
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	4 cut(s)	296, 478, 535, 675
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	4 cut(s)	292, 474, 531, 671
FauI	CCCGC	2 cut(s)	85, 246
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	1005
Fnu4HI	GCNGC	5 cut(s)	251, 258, 333, 353, 842
FokI	GGATG	1 cut(s)	981
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	5 cut(s)	251, 258, 333, 353, 842
FspBI	CTAG	1 cut(s)	560
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	5 cut(s)	251, 258, 333, 353, 842
GsuI	CTGGAG	1 cut(s)	828
HaeIII	GGCC	4 cut(s)	50, 127, 759, 966
HapII	CCGG	8 cut(s)	124, 131, 144, 162, 194, 230, 608, 719
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	4 cut(s)	296, 478, 535, 675
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HinfI	GANTC	2 cut(s)	59, 861
HpaII	CCGG	8 cut(s)	124, 131, 144, 162, 194, 230, 608, 719
HphI	GGTGA	5 cut(s)	91, 247, 298, 721, 922
Hpy166II	GTNNAC	5 cut(s)	202, 289, 553, 823, 1006
Hpy188I	TCNGA	5 cut(s)	10, 544, 589, 715, 988
Hpy188III	TCNNGA	7 cut(s)	438, 482, 491, 500, 719, 743, 1025
Hpy8I	GTNNAC	5 cut(s)	202, 289, 553, 823, 1006
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	361, 893
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	5 cut(s)	519, 635, 841, 937, 1073
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 215, 883
HpyF3I	CTNAG	4 cut(s)	372, 588, 653, 678
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	4 cut(s)	296, 478, 535, 675
HspAI	GCGC	1 cut(s)	335
Kpn2I	TCCGGA	1 cut(s)	718
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	7 cut(s)	81, 151, 237, 493, 544, 715, 832
LmnI	GCTCC	3 cut(s)	388, 414, 809
Lsp1109I	GCAGC	2 cut(s)	339, 853
LweI	GCATC	5 cut(s)	79, 105, 652, 886, 946
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	1 cut(s)	569
MaeIII	GTNAC	2 cut(s)	565, 656
MalI	GATC	7 cut(s)	83, 153, 239, 495, 546, 717, 834
MboI	GATC	7 cut(s)	81, 151, 237, 493, 544, 715, 832
MboII	GAAGA	1 cut(s)	268
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	2 cut(s)	603, 701
MluCI	AATT	5 cut(s)	13, 114, 448, 623, 977
MmeI	TCCRAC	4 cut(s)	33, 61, 294, 306
MreI	CGCCGGCG	1 cut(s)	143
MroI	TCCGGA	1 cut(s)	718
MroNI	GCCGGC	1 cut(s)	143
MslI	CAYNNNNRTG	2 cut(s)	530, 753
MspI	CCGG	8 cut(s)	124, 131, 144, 162, 194, 230, 608, 719
MspR9I	CCNGG	2 cut(s)	281, 807
MvaI	CCWGG	2 cut(s)	281, 807
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	3 cut(s)	140, 215, 883
NaeI	GCCGGC	1 cut(s)	145
NcoI	CCATGG	2 cut(s)	292, 531
NdeII	GATC	7 cut(s)	81, 151, 237, 493, 544, 715, 832
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	4 cut(s)	296, 478, 535, 675
NlaIV	GGNNCC	3 cut(s)	344, 480, 967
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	2 cut(s)	565, 656
PceI	AGGCCT	1 cut(s)	50
PdiI	GCCGGC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	59, 861
PfoI	TCCNGGA	1 cut(s)	805
PkrI	GCNGC	5 cut(s)	252, 259, 334, 354, 843
PpuMI	RGGWCCY	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	2 cut(s)	279, 805
PspGI	CCWGG	2 cut(s)	279, 805
PspN4I	GGNNCC	3 cut(s)	344, 480, 967
PspPI	GGNCC	5 cut(s)	202, 479, 610, 902, 965
PspPPI	RGGWCCY	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	2 cut(s)	377, 962
RsaNI	GTAC	2 cut(s)	376, 961
RseI	CAYNNNNRTG	2 cut(s)	530, 753
SatI	GCNGC	5 cut(s)	251, 258, 333, 353, 842
Sau3AI	GATC	7 cut(s)	81, 151, 237, 493, 544, 715, 832
Sau96I	GGNCC	5 cut(s)	202, 479, 610, 902, 965
ScaI	AGTACT	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	281, 807
SduI	GDGCHC	2 cut(s)	603, 701
SfaNI	GCATC	5 cut(s)	79, 105, 652, 886, 946
SfcI	CTRYAG	1 cut(s)	379
SgrAI	CRCCGGYG	1 cut(s)	143
SinI	GGWCC	4 cut(s)	202, 479, 610, 902
SmiMI	CAYNNNNRTG	2 cut(s)	530, 753
SmlI	CTYRAG	2 cut(s)	44, 498
SmoI	CTYRAG	2 cut(s)	44, 498
Sse9I	AATT	5 cut(s)	13, 114, 448, 623, 977
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	6 cut(s)	92, 250, 253, 257, 260, 332
SspMI	CTAG	1 cut(s)	560
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	279, 805
StyI	CCWWGG	2 cut(s)	292, 531
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	3 cut(s)	240, 437, 897
TasI	AATT	5 cut(s)	13, 114, 448, 623, 977
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	3 cut(s)	253, 260, 335
TfiI	GAWTC	2 cut(s)	59, 861
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	565, 656
TseI	GCWGC	2 cut(s)	352, 841
Tsp45I	GTSAC	2 cut(s)	565, 656
TspDTI	ATGAA	1 cut(s)	1021
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	4 cut(s)	202, 479, 610, 902
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	1005
XspI	CTAG	1 cut(s)	560
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.