Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009638

Physical Location & Seq

Genomic Coordinates Reverse (-)

21234945 .. 21236295

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g23870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGGCCTCCAAGACCGGTGGACTGCCGCAGCTGTCGGCTTAGTCGACAAGCCCTGCGACTCCTGCAAGACCTCGGCGGCGGCCTTGTTCTGCCGAGCCCACTTGGCCTTTCTCTGCCTGGCCTGCGACTCCAGGATCCACCCCGCCAACAAGCTCACCACACGCCACGAGCGAGTCTGGATGTGCGGGGTCTGCGAGCAGGCCCCAGCCGCCGTCACCTGCAAGGCTGACGCCGCCGCTCTCTGCGTCAGCTGCGACGCCGACATCCACTCGGCTAACCCCCTCGCCCGCCGCCACGAGCGGGTCCCGGTCGAGCCTTTTTACGACTCCGCCGAGTCTATCATCGTCAAGTCAACAACAACTGGCCCGTCATCCGCCGCCGCGGCCCACAACTATCTCGTCCCAAACGGCGACGTTGTATTTAACACTAAAGACATTGAAAACGACGCCGCGTCGAGCTGGCTGATCCCCAACCCGAATTTCAACTCGAAGCTCCATATGGATATCGCTCCGGACATCCTAAAGTCCTCCGATGATCTCATCTTCCCCGAAATGGATTCGCTGCTGGAGTTCGATTACCCTACCTCAATACACAATATTTCGGGTTCAGGTGCGAGTAATGACAGCGTTGTTCCGGTTCAACCCGACCCGATTCCACCGCCATCGTTCAACATGAACTACAACTTGTCGGGTCCCGCCGATCACAACTGCTTCGACCTGGACTTTTGCAGAAGCAAGCTCTCTTCTTTCTTCAGCTATCCGACTCAGTCCCTCAGTCAAAGCGTTTCGTCCTCTTCCTTAGATGCCGGAGTTGTTCCCGATGGAAACTCCCTCTCCGATATACCGTATCGCTTCGGCCGAAACACCAGCAGCAACGGTTCGGAACCGGGAGATATATCCTACTCTTTCGGCCCAAAAGCCAGCAACAAGGTTTCGGAAGCCGGCGTACCGGTCTCGGCAACTCCTGCGAGTCAACCAGCGACTCAGCTCTGCGGACTGGACAGGGAGGCTAGGGTATTGAGATACAGACAGAAGAGGAAGAACCGCAAGTTCCAGAAAACAATCCGATATGCTTCGCGGAAAGCGTATGCCGAAACTCGTCCGAGGATCAAGGGCCGGTTCGCGAAACGCAACAAAACCGAAACCGAGACCGAGGTGGGGGATCGCATCTATTGCTCCGGGCCGGGCATTTATATTCCGGACCCACAATTCGGCGTCGTTCCGACGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

411

Amino Acids

44.54

Weight (kDa)

6.75

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57660
fragaria_vesca	FvH4_4g08980 FvH4_4g08980
malus_domestica	MD00G1017500.v1.1 MD07G1300100.v1.1 MD13G1263800.v1.1 MD16G1265000.v1.1
prunus_persica	Prupe.1G093900_v2.0.a1
pyrus_communis	pycom13g23870 pycom16g23480
rosa_chinensis	RchiOBHm_Chr4g0403841
rosa_laevigata	RLG00000008947
rosa_multiflora	Rmu_sc0005134.1_g000019
rosa_roxburghii	Rroxscaffold_5G00348440
rosa_rugosa	Rorug03G0265600 Rorug04G0045800 Rorug05G0458600
rosa_samantha	Rh4AG121100 Rh4BG114300 Rh4CG129600 Rh4DG114200
rosa_wichuraiana	Rw4G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	227
AccBSI	CCGCTC	2 cut(s)	239, 301
AccI	GTMKAC	1 cut(s)	45
AccII	CGCG	4 cut(s)	383, 452, 1078, 1124
AccIII	TCCGGA	2 cut(s)	511, 1198
AclWI	GGATC	5 cut(s)	130, 143, 460, 1115, 1170
AcoI	YGGCCR	1 cut(s)	856
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	736
AcyI	GRCGYC	4 cut(s)	231, 258, 447, 1215
AfaI	GTAC	1 cut(s)	948
AfiI	CCNNNNNNNGG	4 cut(s)	301, 553, 1158, 1211
AgeI	ACCGGT	2 cut(s)	15, 949
AgsI	TTSAA	4 cut(s)	440, 484, 641, 670
AhdI	GACNNNNNGTC	1 cut(s)	451
AjnI	CCWGG	3 cut(s)	117, 131, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AluBI	AGCT	8 cut(s)	32, 154, 252, 459, 493, 739, 756, 988
AluI	AGCT	8 cut(s)	32, 154, 252, 459, 493, 739, 756, 988
Alw26I	GTCTC	2 cut(s)	958, 1142
AlwI	GGATC	5 cut(s)	130, 143, 460, 1115, 1170
Aor13HI	TCCGGA	2 cut(s)	511, 1198
ApeKI	GCWGC	4 cut(s)	29, 252, 562, 870
ApoI	RAATTY	1 cut(s)	478
ArsI	GACNNNNNNTTYG	2 cut(s)	1193, 1225
AsiGI	ACCGGT	2 cut(s)	15, 949
AsuC2I	CCSGG	4 cut(s)	308, 888, 1180, 1185
AsuHPI	GGTGA	2 cut(s)	148, 208
AvaII	GGWCC	3 cut(s)	304, 692, 1201
BamHI	GGATCC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	100
BarI	GAAGNNNNNNTAC	2 cut(s)	930, 962
BauI	CACGAG	2 cut(s)	167, 296
BbvI	GCAGC	4 cut(s)	41, 239, 549, 882
BccI	CCATC	2 cut(s)	670, 815
BceAI	ACGGC	2 cut(s)	197, 424
BciT130I	CCWGG	3 cut(s)	119, 133, 719
BcnI	CCSGG	4 cut(s)	308, 888, 1180, 1185
BcoDI	GTCTC	2 cut(s)	958, 1142
BfaI	CTAG	1 cut(s)	1011
BfuAI	ACCTGC	1 cut(s)	227
BglI	GCCNNNNNGGC	2 cut(s)	104, 383
Bme1390I	CCNGG	7 cut(s)	119, 133, 308, 719, 888, 1180, 1185
Bme18I	GGWCC	3 cut(s)	304, 692, 1201
BmeRI	GACNNNNNGTC	1 cut(s)	451
BmiI	GGNNCC	8 cut(s)	137, 204, 305, 306, 693, 694, 885, 1203
BmrFI	CCNGG	7 cut(s)	119, 133, 308, 719, 888, 1180, 1185
BmsI	GCATC	2 cut(s)	793, 1176
BpmI	CTGGAG	2 cut(s)	115, 587
BpuMI	CCSGG	4 cut(s)	308, 888, 1180, 1185
BsaHI	GRCGYC	4 cut(s)	231, 258, 447, 1215
BsaI	GGTCTC	2 cut(s)	958, 1142
BsaJI	CCNNGG	4 cut(s)	72, 381, 1103, 1152
BsaWI	WCCGGW	5 cut(s)	15, 511, 634, 949, 1198
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bsc4I	CCNNNNNNNGG	4 cut(s)	301, 553, 1158, 1211
Bse118I	RCCGGY	4 cut(s)	15, 941, 949, 1116
Bse1I	ACTGG	2 cut(s)	367, 1002
BseAI	TCCGGA	2 cut(s)	511, 1198
BseBI	CCWGG	3 cut(s)	119, 133, 719
BseDI	CCNNGG	4 cut(s)	72, 381, 1103, 1152
BseGI	GGATG	4 cut(s)	186, 264, 371, 516
BseLI	CCNNNNNNNGG	4 cut(s)	301, 553, 1158, 1211
BseMII	CTCAG	3 cut(s)	779, 787, 998
BseNI	ACTGG	2 cut(s)	367, 1002
BseX3I	CGGCCG	1 cut(s)	856
BseXI	GCAGC	4 cut(s)	41, 239, 549, 882
BseYI	CCCAGC	1 cut(s)	205
Bsh1236I	CGCG	4 cut(s)	383, 452, 1078, 1124
Bsh1285I	CGRYCG	2 cut(s)	312, 859
BshTI	ACCGGT	2 cut(s)	15, 949
BsiEI	CGRYCG	2 cut(s)	312, 859
BslFI	GGGAC	4 cut(s)	290, 386, 678, 754
BslI	CCNNNNNNNGG	4 cut(s)	301, 553, 1158, 1211
BsmAI	GTCTC	2 cut(s)	958, 1142
BsmFI	GGGAC	4 cut(s)	290, 386, 678, 754
Bso31I	GGTCTC	2 cut(s)	958, 1142
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp13I	TCCGGA	2 cut(s)	511, 1198
Bsp143I	GATC	6 cut(s)	135, 465, 535, 700, 1107, 1162
Bsp68I	TCGCGA	1 cut(s)	1124
BspCNI	CTCAG	3 cut(s)	778, 786, 997
BspEI	TCCGGA	2 cut(s)	511, 1198
BspFNI	CGCG	4 cut(s)	383, 452, 1078, 1124
BspLI	GGNNCC	8 cut(s)	137, 204, 305, 306, 693, 694, 885, 1203
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	5 cut(s)	130, 143, 460, 1115, 1170
BspTNI	GGTCTC	2 cut(s)	958, 1142
BsrBI	CCGCTC	2 cut(s)	239, 301
BsrFI	RCCGGY	4 cut(s)	15, 941, 949, 1116
BsrI	ACTGG	2 cut(s)	367, 1002
BssAI	RCCGGY	4 cut(s)	15, 941, 949, 1116
BssECI	CCNNGG	4 cut(s)	72, 381, 1103, 1152
BssMI	GATC	6 cut(s)	135, 465, 535, 700, 1107, 1162
BssNI	GRCGYC	4 cut(s)	231, 258, 447, 1215
BssSI	CACGAG	2 cut(s)	167, 296
Bst2BI	CACGAG	2 cut(s)	167, 296
Bst2UI	CCWGG	3 cut(s)	119, 133, 719
Bst4CI	ACNGT	2 cut(s)	846, 878
Bst6I	CTCTTC	3 cut(s)	748, 799, 1028
BstACI	GRCGYC	4 cut(s)	231, 258, 447, 1215
BstAPI	GCANNNNNTGC	2 cut(s)	965, 1173
BstC8I	GCNNGC	8 cut(s)	124, 197, 201, 289, 461, 737, 922, 943
BstDEI	CTNAG	5 cut(s)	40, 765, 773, 799, 984
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	4 cut(s)	186, 264, 371, 516
BstFNI	CGCG	4 cut(s)	383, 452, 1078, 1124
BstKTI	GATC	6 cut(s)	138, 468, 538, 703, 1110, 1165
BstMAI	GTCTC	2 cut(s)	958, 1142
BstMBI	GATC	6 cut(s)	135, 465, 535, 700, 1107, 1162
BstMCI	CGRYCG	2 cut(s)	312, 859
BstNI	CCWGG	3 cut(s)	119, 133, 719
BstSCI	CCNGG	7 cut(s)	117, 131, 306, 717, 886, 1178, 1183
BstUI	CGCG	4 cut(s)	383, 452, 1078, 1124
BstV1I	GCAGC	4 cut(s)	41, 239, 549, 882
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BstZI	CGGCCG	1 cut(s)	856
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	4 cut(s)	186, 264, 371, 516
BtuMI	TCGCGA	1 cut(s)	1124
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	8 cut(s)	124, 197, 201, 289, 461, 737, 922, 943
Cfr10I	RCCGGY	4 cut(s)	15, 941, 949, 1116
Cfr42I	CCGCGG	1 cut(s)	384
CseI	GACGC	6 cut(s)	235, 239, 266, 441, 455, 1204
Csp6I	GTAC	1 cut(s)	947
CspAI	ACCGGT	2 cut(s)	15, 949
CspCI	CAANNNNNGTGG	1 cut(s)	34
CviAII	CATG	1 cut(s)	673
CviQI	GTAC	1 cut(s)	947
DdeI	CTNAG	5 cut(s)	40, 765, 773, 799, 984
DpnI	GATC	6 cut(s)	137, 467, 537, 702, 1109, 1164
DpnII	GATC	6 cut(s)	135, 465, 535, 700, 1107, 1162
DriI	GACNNNNNGTC	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	856
EagI	CGGCCG	1 cut(s)	856
Eam1104I	CTCTTC	3 cut(s)	748, 799, 1028
Eam1105I	GACNNNNNGTC	1 cut(s)	451
EarI	CTCTTC	3 cut(s)	748, 799, 1028
EciI	GGCGGA	2 cut(s)	319, 364
EclXI	CGGCCG	1 cut(s)	856
Eco24I	GRGCYC	1 cut(s)	100
Eco31I	GGTCTC	2 cut(s)	958, 1142
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	3 cut(s)	304, 692, 1201
Eco52I	CGGCCG	1 cut(s)	856
Eco57I	CTGAAG	1 cut(s)	736
EcoO109I	RGGNCCY	3 cut(s)	202, 304, 692
EcoRII	CCWGG	3 cut(s)	117, 131, 717
EcoRV	GATATC	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	1 cut(s)	676
FaiI	YATR	8 cut(s)	498, 500, 674, 842, 896, 1071, 1089, 1194
FaqI	GGGAC	4 cut(s)	290, 386, 678, 754
FatI	CATG	1 cut(s)	672
FauI	CCCGC	5 cut(s)	151, 179, 294, 296, 703
FauNDI	CATATG	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	45
FokI	GGATG	4 cut(s)	193, 251, 358, 503
FriOI	GRGCYC	1 cut(s)	100
FspBI	CTAG	1 cut(s)	1011
GsaI	CCCAGC	1 cut(s)	209
GsuI	CTGGAG	2 cut(s)	115, 587
HgaI	GACGC	6 cut(s)	235, 239, 266, 441, 455, 1204
Hin1I	GRCGYC	4 cut(s)	231, 258, 447, 1215
Hin1II	CATG	1 cut(s)	676
HincII	GTYRAC	3 cut(s)	46, 354, 974
HindII	GTYRAC	3 cut(s)	46, 354, 974
HphI	GGTGA	2 cut(s)	148, 208
Hpy166II	GTNNAC	4 cut(s)	21, 46, 354, 974
Hpy188I	TCNGA	8 cut(s)	532, 762, 838, 883, 937, 1067, 1104, 1224
Hpy188III	TCNNGA	6 cut(s)	178, 512, 818, 1054, 1123, 1199
Hpy8I	GTNNAC	4 cut(s)	21, 46, 354, 974
Hpy99I	CGWCG	6 cut(s)	260, 416, 449, 457, 1220, 1228
HpyCH4III	ACNGT	2 cut(s)	846, 878
HpyCH4IV	ACGT	2 cut(s)	414, 1226
HpyCH4V	TGCA	3 cut(s)	66, 222, 729
HpyF3I	CTNAG	5 cut(s)	40, 765, 773, 799, 984
HpySE526I	ACGT	2 cut(s)	414, 1226
Hsp92I	GRCGYC	4 cut(s)	231, 258, 447, 1215
Hsp92II	CATG	1 cut(s)	676
KflI	GGGWCCC	2 cut(s)	304, 692
Kpn2I	TCCGGA	2 cut(s)	511, 1198
KroI	GCCGGC	1 cut(s)	941
KroNI	GCCGGC	1 cut(s)	943
KspI	CCGCGG	1 cut(s)	384
Kzo9I	GATC	6 cut(s)	135, 465, 535, 700, 1107, 1162
LmnI	GCTCC	3 cut(s)	498, 514, 1181
Lsp1109I	GCAGC	4 cut(s)	41, 239, 549, 882
LweI	GCATC	2 cut(s)	793, 1176
MaeI	CTAG	1 cut(s)	1011
MaeII	ACGT	2 cut(s)	414, 1226
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	6 cut(s)	137, 467, 537, 702, 1109, 1164
MbiI	CCGCTC	2 cut(s)	239, 301
MboI	GATC	6 cut(s)	135, 465, 535, 700, 1107, 1162
MboII	GAAGA	6 cut(s)	535, 735, 742, 786, 1045, 1051
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	2 cut(s)	478, 1208
MlyI	GAGTC	8 cut(s)	53, 122, 183, 320, 344, 757, 976, 979
MmeI	TCCRAC	1 cut(s)	785
MroI	TCCGGA	2 cut(s)	511, 1198
MroNI	GCCGGC	1 cut(s)	941
MseI	TTAA	1 cut(s)	423
MspA1I	CMGCKG	3 cut(s)	32, 252, 383
MspR9I	CCNGG	7 cut(s)	119, 133, 308, 719, 888, 1180, 1185
MvaI	CCWGG	3 cut(s)	119, 133, 719
MvnI	CGCG	4 cut(s)	383, 452, 1078, 1124
NaeI	GCCGGC	1 cut(s)	943
NciI	CCSGG	4 cut(s)	308, 888, 1180, 1185
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	6 cut(s)	135, 465, 535, 700, 1107, 1162
NgoMIV	GCCGGC	1 cut(s)	941
NlaIII	CATG	1 cut(s)	676
NlaIV	GGNNCC	8 cut(s)	137, 204, 305, 306, 693, 694, 885, 1203
NmeAIII	GCCGAG	5 cut(s)	53, 119, 251, 358, 935
NmuCI	GTSAC	1 cut(s)	214
NruI	TCGCGA	1 cut(s)	1124
PaqCI	CACCTGC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	5 cut(s)	42, 169, 330, 856, 1082
PdiI	GCCGGC	1 cut(s)	943
PfeI	GAWTC	2 cut(s)	557, 652
PflFI	GACNNNGTC	1 cut(s)	766
PfoI	TCCNGGA	1 cut(s)	131
PinAI	ACCGGT	2 cut(s)	15, 949
PleI	GAGTC	8 cut(s)	53, 122, 182, 320, 343, 757, 976, 978
PpsI	GAGTC	8 cut(s)	53, 122, 182, 320, 343, 757, 976, 978
PpuMI	RGGWCCY	2 cut(s)	304, 692
Psp5II	RGGWCCY	2 cut(s)	304, 692
Psp6I	CCWGG	3 cut(s)	117, 131, 717
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	3 cut(s)	117, 131, 717
PspN4I	GGNNCC	8 cut(s)	137, 204, 305, 306, 693, 694, 885, 1203
PspPPI	RGGWCCY	2 cut(s)	304, 692
PsuI	RGATCY	1 cut(s)	135
PsyI	GACNNNGTC	1 cut(s)	766
PvuII	CAGCTG	2 cut(s)	32, 252
RruI	TCGCGA	1 cut(s)	1124
RsaI	GTAC	1 cut(s)	948
RsaNI	GTAC	1 cut(s)	947
SacII	CCGCGG	1 cut(s)	384
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	423
Sau3AI	GATC	6 cut(s)	135, 465, 535, 700, 1107, 1162
SchI	GAGTC	8 cut(s)	53, 122, 183, 320, 344, 757, 976, 979
ScrFI	CCNGG	7 cut(s)	119, 133, 308, 719, 888, 1180, 1185
SduI	GDGCHC	1 cut(s)	100
SfaNI	GCATC	2 cut(s)	793, 1176
Sfr303I	CCGCGG	1 cut(s)	384
SgrBI	CCGCGG	1 cut(s)	384
SinI	GGWCC	3 cut(s)	304, 692, 1201
Sse9I	AATT	2 cut(s)	478, 1208
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	1 cut(s)	1011
StyD4I	CCNGG	7 cut(s)	117, 131, 306, 717, 886, 1178, 1183
TaaI	ACNGT	2 cut(s)	846, 878
TaiI	ACGT	2 cut(s)	417, 1229
TaqI	TCGA	6 cut(s)	45, 312, 455, 488, 573, 714
TaqII	GACCGA	1 cut(s)	1166
TasI	AATT	2 cut(s)	478, 1208
TfiI	GAWTC	2 cut(s)	557, 652
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	4 cut(s)	29, 252, 562, 870
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	689
Tth111I	GACNNNGTC	1 cut(s)	766
VpaK11BI	GGWCC	3 cut(s)	304, 692, 1201
XapI	RAATTY	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.