Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009638

Physical Location & Seq

Genomic Coordinates Forward (+)

2528287 .. 2529180

Gene Structure 894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1017500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTGTGGGGTCTGCCAGCAAGCCCCAGCCGCCGTCACCTGCAAGGCTGACGCCGCTGCTCTCTGCGTCAGCTGCGACACCGACATCCACTCAGCTAACCCCATCGCCCGCCGCCACGAGTGGGTCCCGGTCGAGCCTTTTTACGACGCCGCCGAGTCTATCGTCGTCAAGTCAACAACTGGCCCGTCATCCGCCGCCGCGGCTCTCAACTACCTCGTCCCAAACGGAGACGTTGTATTTAACACTAAAGACATTGAAAACAACGCCGCGTCGAGCTGGCTGATCCCCAACCCGAATTTCAACTCGAAGCTCCATATGGATATCGCTCCGGACATCCTAAAGTCCTCCAATGATCTCATCTTCCCCGAAATTGATTCACTGCTGGAGTTCGATTACCCTACCTCAGTACACACTATTTCGGGTTCGGGTGCGTGTAATGACAGCGTTGTTCCGGTTCAACTCGACCCGATTCCACCGCCATCGTTCAACATGAACTACAACATTTCGGGTCCCGCCGATCACAACTGTTTCGACCTGGACTTTTGCAGAAGCAAGCTCTATTCTTCATTTAACAACCTCCTCAATCTCCACTCCTACAAGCACTCTGGGTTGGCAAACAAGAAAACCGTGACCATTCAGGGTGTGGGCAAAGATCAATCTGTGCTGCTGGCAACAAGTAAGTCCAATAAGCAGAACAAGCCTGCTGCTCTGCTGCATAAGTCTATGATGAAGCAGGAGTTCCGCAGGATGGCGAAGGCGGTCGGTAATCAGGTGGCGGATAACCATTACAGGCCGGATCTGAAAAAAAGCAGCCCTTGCAAGGTTGAGTGCTGTTCACAAGAGCCTCAAGATTGCCAAGTCTGGTGTCAAGAAGAGGAACAGGCAAGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

298

Amino Acids

32.41

Weight (kDa)

5.69

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	186 - 270	2.9e-18	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57660
fragaria_vesca	FvH4_4g08980 FvH4_4g08980
malus_domestica	MD00G1017500.v1.1 MD07G1300100.v1.1 MD13G1263800.v1.1 MD16G1265000.v1.1
prunus_persica	Prupe.1G093900_v2.0.a1
pyrus_communis	pycom13g23870 pycom16g23480
rosa_chinensis	RchiOBHm_Chr4g0403841
rosa_laevigata	RLG00000008947
rosa_multiflora	Rmu_sc0005134.1_g000019
rosa_roxburghii	Rroxscaffold_5G00348440
rosa_rugosa	Rorug03G0265600 Rorug04G0045800 Rorug05G0458600
rosa_samantha	Rh4AG121100 Rh4BG114300 Rh4CG129600 Rh4DG114200
rosa_wichuraiana	Rw4G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	47
AccII	CGCG	2 cut(s)	200, 269
AccIII	TCCGGA	1 cut(s)	328
AclWI	GGATC	2 cut(s)	277, 804
AcsI	RAATTY	1 cut(s)	295
AcyI	GRCGYC	2 cut(s)	51, 147
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	3 cut(s)	121, 748, 820
AgsI	TTSAA	4 cut(s)	257, 301, 458, 487
AjnI	CCWGG	1 cut(s)	534
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	6 cut(s)	72, 95, 276, 310, 556, 888
AluI	AGCT	6 cut(s)	72, 95, 276, 310, 556, 888
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	277, 804
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	2 cut(s)	181, 791
ApeKI	GCWGC	6 cut(s)	56, 72, 664, 704, 712, 810
ApoI	RAATTY	1 cut(s)	295
AspS9I	GGNCC	3 cut(s)	124, 182, 509
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	124, 509
BauI	CACGAG	1 cut(s)	116
BbvI	GCAGC	6 cut(s)	43, 59, 651, 691, 699, 822
BccI	CCATC	3 cut(s)	110, 487, 742
BceAI	ACGGC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	536
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	47
BglI	GCCNNNNNGGC	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	128, 536
Bme18I	GGWCC	2 cut(s)	124, 509
BmgT120I	GGNCC	3 cut(s)	124, 182, 509
BmiI	GGNNCC	4 cut(s)	125, 126, 510, 511
BmrFI	CCNGG	2 cut(s)	128, 536
BpmI	CTGGAG	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	831
BpuMI	CCSGG	1 cut(s)	128
BsaHI	GRCGYC	2 cut(s)	51, 147
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	2 cut(s)	328, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 748, 820
Bse1I	ACTGG	1 cut(s)	184
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	4 cut(s)	84, 188, 333, 753
BseLI	CCNNNNNNNGG	3 cut(s)	121, 748, 820
BseMII	CTCAG	2 cut(s)	105, 417
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	6 cut(s)	43, 59, 651, 691, 699, 822
BseYI	CCCAGC	1 cut(s)	25
Bsh1236I	CGCG	2 cut(s)	200, 269
Bsh1285I	CGRYCG	2 cut(s)	132, 762
BshFI	GGCC	2 cut(s)	183, 793
BsiEI	CGRYCG	2 cut(s)	132, 762
BsiSI	CCGG	4 cut(s)	128, 329, 452, 794
BslFI	GGGAC	3 cut(s)	110, 203, 495
BslI	CCNNNNNNNGG	3 cut(s)	121, 748, 820
BsmAI	GTCTC	1 cut(s)	222
BsmBI	CGTCTC	1 cut(s)	222
BsmFI	GGGAC	3 cut(s)	110, 203, 495
BsnI	GGCC	2 cut(s)	183, 793
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	5 cut(s)	282, 352, 517, 652, 796
BspANI	GGCC	2 cut(s)	183, 793
BspCNI	CTCAG	2 cut(s)	104, 416
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	2 cut(s)	200, 269
BspLI	GGNNCC	4 cut(s)	125, 126, 510, 511
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	2 cut(s)	277, 804
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	5 cut(s)	282, 352, 517, 652, 796
BssNI	GRCGYC	2 cut(s)	51, 147
BssSI	CACGAG	1 cut(s)	116
Bst2BI	CACGAG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	527, 628
Bst6I	CTCTTC	1 cut(s)	867
BstACI	GRCGYC	2 cut(s)	51, 147
BstAPI	GCANNNNNTGC	1 cut(s)	816
BstC8I	GCNNGC	8 cut(s)	17, 21, 109, 278, 554, 669, 702, 886
BstDEI	CTNAG	2 cut(s)	91, 403
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	4 cut(s)	84, 188, 333, 753
BstFNI	CGCG	2 cut(s)	200, 269
BstKTI	GATC	5 cut(s)	285, 355, 520, 655, 799
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	5 cut(s)	282, 352, 517, 652, 796
BstMCI	CGRYCG	2 cut(s)	132, 762
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 53, 72, 200, 697, 816
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	2 cut(s)	126, 534
BstUI	CGCG	2 cut(s)	200, 269
BstV1I	GCAGC	6 cut(s)	43, 59, 651, 691, 699, 822
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
BsuRI	GGCC	2 cut(s)	183, 793
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	4 cut(s)	84, 188, 333, 753
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	8 cut(s)	17, 21, 109, 278, 554, 669, 702, 886
Cfr13I	GGNCC	3 cut(s)	124, 182, 509
Cfr42I	CCGCGG	1 cut(s)	201
CseI	GACGC	4 cut(s)	55, 59, 155, 258
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	1 cut(s)	490
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	2 cut(s)	91, 403
DpnI	GATC	5 cut(s)	284, 354, 519, 654, 798
DpnII	GATC	5 cut(s)	282, 352, 517, 652, 796
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
EciI	GGCGGA	2 cut(s)	181, 791
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	124, 509
EcoO109I	RGGNCCY	2 cut(s)	124, 509
EcoRII	CCWGG	1 cut(s)	534
EcoRV	GATATC	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	1 cut(s)	493
FaiI	YATR	5 cut(s)	315, 317, 491, 717, 725
FalI	AAGNNNNNCTT	2 cut(s)	799, 831
FaqI	GGGAC	3 cut(s)	110, 203, 495
FatI	CATG	1 cut(s)	489
FauI	CCCGC	2 cut(s)	116, 520
FauNDI	CATATG	1 cut(s)	315
FokI	GGATG	4 cut(s)	71, 175, 320, 760
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	183, 793
HapII	CCGG	4 cut(s)	128, 329, 452, 794
HgaI	GACGC	4 cut(s)	55, 59, 155, 258
Hin1I	GRCGYC	2 cut(s)	51, 147
Hin1II	CATG	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	3 cut(s)	155, 374, 469
HpaII	CCGG	4 cut(s)	128, 329, 452, 794
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	3 cut(s)	174, 409, 836
Hpy188I	TCNGA	1 cut(s)	801
Hpy188III	TCNNGA	3 cut(s)	329, 848, 869
Hpy8I	GTNNAC	3 cut(s)	174, 409, 836
Hpy99I	CGWCG	3 cut(s)	149, 167, 274
HpyAV	CCTTC	1 cut(s)	748
HpyCH4III	ACNGT	2 cut(s)	527, 628
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	42, 546, 715, 819
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 53, 72, 200, 697, 816
HpyF3I	CTNAG	2 cut(s)	91, 403
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	2 cut(s)	51, 147
Hsp92II	CATG	1 cut(s)	493
KflI	GGGWCCC	2 cut(s)	124, 509
Kpn2I	TCCGGA	1 cut(s)	328
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	282, 352, 517, 652, 796
LmnI	GCTCC	2 cut(s)	315, 331
Lsp1109I	GCAGC	6 cut(s)	43, 59, 651, 691, 699, 822
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	34, 628
MalI	GATC	5 cut(s)	284, 354, 519, 654, 798
MboI	GATC	5 cut(s)	282, 352, 517, 652, 796
MboII	GAAGA	3 cut(s)	352, 555, 884
MflI	RGATCY	1 cut(s)	796
MluCI	AATT	2 cut(s)	295, 369
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	7 cut(s)	224, 355, 412, 587, 590, 855, 868
MroI	TCCGGA	1 cut(s)	328
MseI	TTAA	3 cut(s)	240, 570, 892
MspA1I	CMGCKG	3 cut(s)	56, 72, 200
MspI	CCGG	4 cut(s)	128, 329, 452, 794
MspR9I	CCNGG	2 cut(s)	128, 536
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	2 cut(s)	200, 269
MwoI	GCNNNNNNNGC	6 cut(s)	29, 53, 72, 200, 697, 816
NciI	CCSGG	1 cut(s)	128
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	5 cut(s)	282, 352, 517, 652, 796
NlaIII	CATG	1 cut(s)	493
NlaIV	GGNNCC	4 cut(s)	125, 126, 510, 511
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	2 cut(s)	34, 628
PaqCI	CACCTGC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	374, 469
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PpuMI	RGGWCCY	2 cut(s)	124, 509
Psp5II	RGGWCCY	2 cut(s)	124, 509
Psp6I	CCWGG	1 cut(s)	534
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	4 cut(s)	125, 126, 510, 511
PspPI	GGNCC	3 cut(s)	124, 182, 509
PspPPI	RGGWCCY	2 cut(s)	124, 509
PsuI	RGATCY	1 cut(s)	796
PvuII	CAGCTG	1 cut(s)	72
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SacII	CCGCGG	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	240, 570, 892
Sau3AI	GATC	5 cut(s)	282, 352, 517, 652, 796
Sau96I	GGNCC	3 cut(s)	124, 182, 509
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	128, 536
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	124, 509
SmlI	CTYRAG	1 cut(s)	846
SmoI	CTYRAG	1 cut(s)	846
Sse9I	AATT	2 cut(s)	295, 369
StyD4I	CCNGG	2 cut(s)	126, 534
TaaI	ACNGT	2 cut(s)	527, 628
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	6 cut(s)	132, 272, 305, 390, 462, 531
TasI	AATT	2 cut(s)	295, 369
TatI	WGTACW	1 cut(s)	406
TauI	GCSGC	8 cut(s)	32, 56, 114, 152, 197, 200, 203, 269
TfiI	GAWTC	2 cut(s)	374, 469
Tru1I	TTAA	3 cut(s)	240, 570, 892
Tru9I	TTAA	3 cut(s)	240, 570, 892
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	2 cut(s)	34, 628
TseI	GCWGC	6 cut(s)	56, 72, 664, 704, 712, 810
Tsp45I	GTSAC	2 cut(s)	34, 628
TspDTI	ATGAA	3 cut(s)	506, 555, 743
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	2 cut(s)	124, 509
XapI	RAATTY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.