Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009638

Physical Location & Seq

Genomic Coordinates Forward (+)

26139343 .. 26141934

Gene Structure 2592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG121100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGACTTCAAGCCGGTTGGACCCTGCCGGGGCTCACCCCCAAGCCCTGCGACACCTGCAAGTCGTCGCCGTCGGCCGTCTTCTGCCGCGCCGACTCGGCCTACCTCTGCCTGACCTGCGACTCCAAGATCCACTGCGCCAACAAGCTCGCGTCGCGCCACCAGCGCGTGTGGATGTGCGAGGTCTGCGAGCAAGCCCCGGCCGCCGTCACGTGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGCGACGCCGACATCCACTCCGCCAATCCACTCGCGCGTCGCCACGAGCGCGTCCCCGTGGAGCCGTTCCTAGACTCGGCCGAGTCCATCGTCAAATCCACCTCGGCCGCTGGCCTCAACGACGCCGTTTCGTCTCTTAAAAACGACGACGCCGATTCTCTGCTCATTCCCAACCTGAATTTCAGCTCCAAGTTCATTGAGGCTCTCGACGTCAAGCCCGGGGATATGTTCTTCCCGGAAATGGAATCGTTATTCGAACTCGATTACCCGAACCCGATCCAAAACTCCAGTTCGGGTATGGATAGCGTGGTTCCGGTTCAACCCGACCCGATTCCACCTCCTCCTGTCGTCAACCAACCCCCTCGTGAAAATTGCTTCGACATTGACTTCTGCCGAAACAAGCTGTCTTCCTCCTTCAGTTATCCAGCTCAGTCAATCAGCCAAAGCGTAAGTGTTAAATCTTCCTTTTGTTTTTCCGGAAAACAATTTGGCTTTTCTATACTGATTCTCCAGTTTGATTCTCCGATTTTCTGCAGGTCTCGTCGTCCTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

266

Amino Acids

28.93

Weight (kDa)

5.23

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	56 - 102	9.2e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57660
fragaria_vesca	FvH4_4g08980 FvH4_4g08980
malus_domestica	MD00G1017500.v1.1 MD07G1300100.v1.1 MD13G1263800.v1.1 MD16G1265000.v1.1
prunus_persica	Prupe.1G093900_v2.0.a1
pyrus_communis	pycom13g23870 pycom16g23480
rosa_chinensis	RchiOBHm_Chr4g0403841
rosa_laevigata	RLG00000008947
rosa_multiflora	Rmu_sc0005134.1_g000019
rosa_roxburghii	Rroxscaffold_5G00348440
rosa_rugosa	Rorug03G0265600 Rorug04G0045800 Rorug05G0458600
rosa_samantha	Rh4AG121100 Rh4BG114300 Rh4CG129600 Rh4DG114200
rosa_wichuraiana	Rw4G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	65
AatII	GACGTC	1 cut(s)	459
Acc36I	ACCTGC	3 cut(s)	65, 125, 771
AccII	CGCG	7 cut(s)	90, 152, 157, 168, 281, 283, 297
AccIII	TCCGGA	1 cut(s)	722
AciI	CCGC	6 cut(s)	88, 204, 228, 231, 267, 354
AclWI	GGATC	2 cut(s)	124, 517
AcoI	YGGCCR	4 cut(s)	75, 201, 324, 351
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	646
AcvI	CACGTG	2 cut(s)	213, 246
AcyI	GRCGYC	5 cut(s)	225, 252, 369, 396, 456
AfiI	CCNNNNNNNGG	3 cut(s)	30, 322, 487
AgsI	TTSAA	2 cut(s)	11, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	4 cut(s)	148, 432, 649, 674
AluI	AGCT	4 cut(s)	148, 432, 649, 674
Alw26I	GTCTC	2 cut(s)	384, 789
AlwI	GGATC	2 cut(s)	124, 517
Ama87I	CYCGRG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	722
AoxI	GGCC	7 cut(s)	75, 99, 201, 219, 324, 351, 358
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	6 cut(s)	92, 140, 159, 168, 283, 297
AspS9I	GGNCC	1 cut(s)	21
AsuC2I	CCSGG	5 cut(s)	30, 200, 465, 466, 482
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	501
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	36
BauI	CACGAG	2 cut(s)	290, 609
BbrPI	CACGTG	2 cut(s)	213, 246
BbsI	GAAGAC	2 cut(s)	73, 645
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	5 cut(s)	55, 62, 191, 295, 356
BcnI	CCSGG	5 cut(s)	30, 200, 465, 466, 482
BcoDI	GTCTC	2 cut(s)	384, 789
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	778
BfuAI	ACCTGC	3 cut(s)	65, 125, 771
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	5 cut(s)	88, 204, 228, 231, 354
BlsI	GCNGC	5 cut(s)	89, 205, 229, 232, 355
Bme1390I	CCNGG	5 cut(s)	30, 200, 465, 466, 482
Bme18I	GGWCC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	3 cut(s)	23, 309, 558
BmrFI	CCNGG	5 cut(s)	30, 200, 465, 466, 482
BpiI	GAAGAC	2 cut(s)	73, 645
BpmI	CTGGAG	2 cut(s)	517, 740
Bpu14I	TTCGAA	1 cut(s)	501
BpuMI	CCSGG	5 cut(s)	30, 200, 465, 466, 482
BsaAI	YACGTR	2 cut(s)	213, 246
BsaHI	GRCGYC	5 cut(s)	225, 252, 369, 396, 456
BsaI	GGTCTC	1 cut(s)	789
BsaJI	CCNNGG	6 cut(s)	29, 198, 303, 348, 464, 465
BsaWI	WCCGGW	2 cut(s)	559, 722
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 738, 768
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 322, 487
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	534, 757
BseAI	TCCGGA	1 cut(s)	722
BseDI	CCNNGG	6 cut(s)	29, 198, 303, 348, 464, 465
BseGI	GGATG	2 cut(s)	180, 258
BseLI	CCNNNNNNNGG	3 cut(s)	30, 322, 487
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	2 cut(s)	534, 757
BseRI	GAGGAG	1 cut(s)	576
BseX3I	CGGCCG	4 cut(s)	75, 201, 324, 351
Bsh1236I	CGCG	7 cut(s)	90, 152, 157, 168, 281, 283, 297
Bsh1285I	CGRYCG	4 cut(s)	78, 204, 327, 354
BshFI	GGCC	7 cut(s)	77, 101, 203, 221, 326, 353, 360
BsiEI	CGRYCG	4 cut(s)	78, 204, 327, 354
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	7 cut(s)	15, 29, 200, 465, 482, 560, 723
BslFI	GGGAC	2 cut(s)	18, 284
BslI	CCNNNNNNNGG	3 cut(s)	30, 322, 487
BsmAI	GTCTC	2 cut(s)	384, 789
BsmBI	CGTCTC	1 cut(s)	384
BsmFI	GGGAC	2 cut(s)	18, 284
BsnI	GGCC	7 cut(s)	77, 101, 203, 221, 326, 353, 360
Bso31I	GGTCTC	1 cut(s)	789
BsoBI	CYCGRG	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	722
Bsp143I	GATC	2 cut(s)	129, 522
BspACI	CCGC	6 cut(s)	88, 204, 228, 231, 267, 354
BspANI	GGCC	7 cut(s)	77, 101, 203, 221, 326, 353, 360
BspCNI	CTCAG	1 cut(s)	688
BspEI	TCCGGA	1 cut(s)	722
BspFNI	CGCG	7 cut(s)	90, 152, 157, 168, 281, 283, 297
BspLI	GGNNCC	3 cut(s)	23, 309, 558
BspMAI	CTGCAG	1 cut(s)	782
BspMI	ACCTGC	3 cut(s)	65, 125, 771
BspPI	GGATC	2 cut(s)	124, 517
BspT104I	TTCGAA	1 cut(s)	501
BspTNI	GGTCTC	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	534, 757
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	6 cut(s)	29, 198, 303, 348, 464, 465
BssMI	GATC	2 cut(s)	129, 522
BssNI	GRCGYC	5 cut(s)	225, 252, 369, 396, 456
BssSI	CACGAG	2 cut(s)	290, 609
Bst2BI	CACGAG	2 cut(s)	290, 609
BstACI	GRCGYC	5 cut(s)	225, 252, 369, 396, 456
BstBAI	YACGTR	2 cut(s)	213, 246
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	4 cut(s)	150, 191, 195, 358
BstDEI	CTNAG	2 cut(s)	675, 798
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	180, 258
BstFNI	CGCG	7 cut(s)	90, 152, 157, 168, 281, 283, 297
BstHHI	GCGC	6 cut(s)	92, 140, 159, 168, 283, 297
BstKTI	GATC	2 cut(s)	132, 525
BstMAI	GTCTC	2 cut(s)	384, 789
BstMBI	GATC	2 cut(s)	129, 522
BstMCI	CGRYCG	4 cut(s)	78, 204, 327, 354
BstSCI	CCNGG	5 cut(s)	28, 198, 463, 464, 480
BstSFI	CTRYAG	1 cut(s)	778
BstUI	CGCG	7 cut(s)	90, 152, 157, 168, 281, 283, 297
BstV2I	GAAGAC	2 cut(s)	73, 645
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BstZI	CGGCCG	4 cut(s)	75, 201, 324, 351
BsuRI	GGCC	7 cut(s)	77, 101, 203, 221, 326, 353, 360
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	180, 258
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	3 cut(s)	65, 125, 771
Cac8I	GCNNGC	4 cut(s)	150, 191, 195, 358
CfoI	GCGC	6 cut(s)	92, 140, 159, 168, 283, 297
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	21
Cfr9I	CCCGGG	1 cut(s)	464
CseI	GACGC	8 cut(s)	141, 229, 233, 260, 272, 286, 377, 404
DdeI	CTNAG	2 cut(s)	675, 798
DpnI	GATC	2 cut(s)	131, 524
DpnII	GATC	2 cut(s)	129, 522
EaeI	YGGCCR	4 cut(s)	75, 201, 324, 351
EagI	CGGCCG	4 cut(s)	75, 201, 324, 351
EciI	GGCGGA	1 cut(s)	256
EclXI	CGGCCG	4 cut(s)	75, 201, 324, 351
Eco24I	GRGCYC	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	21
Eco52I	CGGCCG	4 cut(s)	75, 201, 324, 351
Eco57I	CTGAAG	1 cut(s)	646
Eco72I	CACGTG	2 cut(s)	213, 246
Eco88I	CYCGRG	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	384
FaiI	YATR	3 cut(s)	473, 545, 746
FaqI	GGGAC	2 cut(s)	18, 284
Fnu4HI	GCNGC	5 cut(s)	88, 204, 228, 231, 354
FokI	GGATG	2 cut(s)	187, 245
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	5 cut(s)	88, 204, 228, 231, 354
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	6 cut(s)	91, 139, 158, 167, 282, 296
GluI	GCNGC	5 cut(s)	88, 204, 228, 231, 354
GsuI	CTGGAG	2 cut(s)	517, 740
HaeIII	GGCC	7 cut(s)	77, 101, 203, 221, 326, 353, 360
HapII	CCGG	7 cut(s)	15, 29, 200, 465, 482, 560, 723
HgaI	GACGC	8 cut(s)	141, 229, 233, 260, 272, 286, 377, 404
HhaI	GCGC	6 cut(s)	92, 140, 159, 168, 283, 297
Hin1I	GRCGYC	5 cut(s)	225, 252, 369, 396, 456
Hin6I	GCGC	6 cut(s)	90, 138, 157, 166, 281, 295
HinP1I	GCGC	6 cut(s)	90, 138, 157, 166, 281, 295
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	9 cut(s)	95, 122, 320, 329, 401, 491, 577, 751, 764
HpaII	CCGG	7 cut(s)	15, 29, 200, 465, 482, 560, 723
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	1 cut(s)	771
Hpy188III	TCNNGA	3 cut(s)	452, 611, 723
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	1 cut(s)	670
HpyCH4IV	ACGT	3 cut(s)	212, 245, 456
HpyCH4V	TGCA	3 cut(s)	60, 216, 780
HpyF3I	CTNAG	2 cut(s)	675, 798
HpySE526I	ACGT	3 cut(s)	212, 245, 456
Hsp92I	GRCGYC	5 cut(s)	225, 252, 369, 396, 456
HspAI	GCGC	6 cut(s)	90, 138, 157, 166, 281, 295
Kpn2I	TCCGGA	1 cut(s)	722
Kzo9I	GATC	2 cut(s)	129, 522
LmnI	GCTCC	2 cut(s)	307, 437
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	3 cut(s)	212, 245, 456
MaeIII	GTNAC	2 cut(s)	208, 241
MalI	GATC	2 cut(s)	131, 524
MboI	GATC	2 cut(s)	129, 522
MboII	GAAGA	4 cut(s)	73, 469, 645, 699
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	3 cut(s)	424, 616, 731
MlyI	GAGTC	4 cut(s)	89, 116, 314, 338
MroI	TCCGGA	1 cut(s)	722
MseI	TTAA	2 cut(s)	384, 702
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	7 cut(s)	15, 29, 200, 465, 482, 560, 723
MspR9I	CCNGG	5 cut(s)	30, 200, 465, 466, 482
MvnI	CGCG	7 cut(s)	90, 152, 157, 168, 281, 283, 297
NciI	CCSGG	5 cut(s)	30, 200, 465, 466, 482
NdeII	GATC	2 cut(s)	129, 522
NlaIV	GGNNCC	3 cut(s)	23, 309, 558
NmeAIII	GCCGAG	4 cut(s)	77, 302, 329, 352
NmuCI	GTSAC	2 cut(s)	208, 241
NspV	TTCGAA	1 cut(s)	501
PaqCI	CACCTGC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	5 cut(s)	401, 491, 577, 751, 764
PfoI	TCCNGGA	1 cut(s)	480
PkrI	GCNGC	5 cut(s)	89, 205, 229, 232, 355
PleI	GAGTC	4 cut(s)	89, 116, 314, 337
PmaCI	CACGTG	2 cut(s)	213, 246
PmlI	CACGTG	2 cut(s)	213, 246
PpsI	GAGTC	4 cut(s)	89, 116, 314, 337
Ppu21I	YACGTR	2 cut(s)	213, 246
PspCI	CACGTG	2 cut(s)	213, 246
PspN4I	GGNNCC	3 cut(s)	23, 309, 558
PspPI	GGNCC	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	782
PsuI	RGATCY	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	384, 702
SatI	GCNGC	5 cut(s)	88, 204, 228, 231, 354
Sau3AI	GATC	2 cut(s)	129, 522
Sau96I	GGNCC	1 cut(s)	21
SchI	GAGTC	4 cut(s)	89, 116, 314, 338
ScrFI	CCNGG	5 cut(s)	30, 200, 465, 466, 482
SduI	GDGCHC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	778
SfuI	TTCGAA	1 cut(s)	501
SinI	GGWCC	1 cut(s)	21
SmaI	CCCGGG	1 cut(s)	466
Sse9I	AATT	3 cut(s)	424, 616, 731
SsiI	CCGC	6 cut(s)	88, 204, 228, 231, 267, 354
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	5 cut(s)	28, 198, 463, 464, 480
TaiI	ACGT	3 cut(s)	215, 248, 459
TaqI	TCGA	4 cut(s)	453, 501, 507, 624
TasI	AATT	3 cut(s)	424, 616, 731
TauI	GCSGC	5 cut(s)	90, 206, 230, 233, 356
TfiI	GAWTC	5 cut(s)	401, 491, 577, 751, 764
Tru1I	TTAA	2 cut(s)	384, 702
Tru9I	TTAA	2 cut(s)	384, 702
TscAI	CASTG	1 cut(s)	140
TseFI	GTSAC	2 cut(s)	208, 241
Tsp45I	GTSAC	2 cut(s)	208, 241
TspDTI	ATGAA	1 cut(s)	430
TspMI	CCCGGG	1 cut(s)	464
TspRI	CASTG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XmaI	CCCGGG	1 cut(s)	464
XspI	CTAG	1 cut(s)	317
ZraI	GACGTC	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.